Experiment: R2A with Tetracycline 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS01430 and CA265_RS01435 are separated by 18 nucleotides CA265_RS01435 and CA265_RS01440 are separated by 29 nucleotides
CA265_RS01430: CA265_RS01430 - hypothetical protein, at 360,848 to 362,545
_RS01430
CA265_RS01435: CA265_RS01435 - hypothetical protein, at 362,564 to 365,686
_RS01435
CA265_RS01440: CA265_RS01440 - hypothetical protein, at 365,716 to 366,900
_RS01440
Position (kb) 362
363
364
365
366 Strain fitness (log2 ratio) -2
-1
0
1
2 at 361.640 kb on - strand, within CA265_RS01430 at 361.648 kb on + strand, within CA265_RS01430 at 361.648 kb on + strand, within CA265_RS01430 at 361.648 kb on + strand at 361.716 kb on + strand, within CA265_RS01430 at 361.716 kb on + strand, within CA265_RS01430 at 361.767 kb on - strand, within CA265_RS01430 at 361.767 kb on - strand, within CA265_RS01430 at 361.836 kb on - strand, within CA265_RS01430 at 361.871 kb on - strand, within CA265_RS01430 at 361.976 kb on + strand, within CA265_RS01430 at 361.989 kb on + strand, within CA265_RS01430 at 361.993 kb on + strand, within CA265_RS01430 at 361.994 kb on - strand, within CA265_RS01430 at 362.053 kb on - strand, within CA265_RS01430 at 362.107 kb on + strand, within CA265_RS01430 at 362.144 kb on - strand, within CA265_RS01430 at 362.145 kb on + strand, within CA265_RS01430 at 362.146 kb on - strand, within CA265_RS01430 at 362.146 kb on - strand, within CA265_RS01430 at 362.168 kb on - strand, within CA265_RS01430 at 362.198 kb on + strand, within CA265_RS01430 at 362.257 kb on + strand, within CA265_RS01430 at 362.302 kb on - strand, within CA265_RS01430 at 362.338 kb on + strand, within CA265_RS01430 at 362.378 kb on + strand at 362.457 kb on - strand at 362.493 kb on - strand at 362.505 kb on - strand at 362.512 kb on + strand at 362.524 kb on + strand at 362.527 kb on - strand at 362.528 kb on + strand at 362.528 kb on + strand at 362.529 kb on - strand at 362.533 kb on - strand at 362.610 kb on + strand at 362.614 kb on - strand at 362.673 kb on - strand at 362.693 kb on + strand at 362.694 kb on - strand at 362.694 kb on - strand at 362.708 kb on + strand at 362.771 kb on + strand at 362.815 kb on + strand at 362.816 kb on - strand at 362.863 kb on + strand at 362.864 kb on - strand at 362.906 kb on + strand, within CA265_RS01435 at 363.011 kb on + strand, within CA265_RS01435 at 363.012 kb on - strand, within CA265_RS01435 at 363.018 kb on - strand, within CA265_RS01435 at 363.059 kb on + strand, within CA265_RS01435 at 363.076 kb on - strand, within CA265_RS01435 at 363.076 kb on - strand, within CA265_RS01435 at 363.088 kb on + strand, within CA265_RS01435 at 363.088 kb on + strand, within CA265_RS01435 at 363.088 kb on + strand, within CA265_RS01435 at 363.089 kb on - strand, within CA265_RS01435 at 363.089 kb on - strand at 363.111 kb on + strand, within CA265_RS01435 at 363.132 kb on - strand, within CA265_RS01435 at 363.233 kb on + strand, within CA265_RS01435 at 363.233 kb on + strand, within CA265_RS01435 at 363.299 kb on - strand, within CA265_RS01435 at 363.309 kb on + strand, within CA265_RS01435 at 363.326 kb on - strand, within CA265_RS01435 at 363.333 kb on + strand, within CA265_RS01435 at 363.386 kb on - strand, within CA265_RS01435 at 363.398 kb on - strand, within CA265_RS01435 at 363.459 kb on - strand, within CA265_RS01435 at 363.464 kb on - strand, within CA265_RS01435 at 363.480 kb on + strand, within CA265_RS01435 at 363.481 kb on - strand, within CA265_RS01435 at 363.536 kb on + strand, within CA265_RS01435 at 363.537 kb on - strand, within CA265_RS01435 at 363.593 kb on + strand, within CA265_RS01435 at 363.594 kb on - strand, within CA265_RS01435 at 363.655 kb on - strand, within CA265_RS01435 at 363.705 kb on + strand, within CA265_RS01435 at 363.828 kb on + strand, within CA265_RS01435 at 363.841 kb on + strand, within CA265_RS01435 at 363.863 kb on - strand, within CA265_RS01435 at 363.883 kb on + strand, within CA265_RS01435 at 363.906 kb on + strand, within CA265_RS01435 at 363.916 kb on + strand, within CA265_RS01435 at 363.982 kb on + strand, within CA265_RS01435 at 363.982 kb on + strand, within CA265_RS01435 at 363.992 kb on + strand, within CA265_RS01435 at 364.053 kb on + strand, within CA265_RS01435 at 364.054 kb on - strand, within CA265_RS01435 at 364.111 kb on - strand, within CA265_RS01435 at 364.136 kb on - strand, within CA265_RS01435 at 364.136 kb on - strand, within CA265_RS01435 at 364.138 kb on - strand, within CA265_RS01435 at 364.138 kb on - strand, within CA265_RS01435 at 364.188 kb on + strand, within CA265_RS01435 at 364.211 kb on - strand, within CA265_RS01435 at 364.212 kb on + strand, within CA265_RS01435 at 364.213 kb on - strand, within CA265_RS01435 at 364.347 kb on - strand, within CA265_RS01435 at 364.374 kb on + strand, within CA265_RS01435 at 364.432 kb on + strand, within CA265_RS01435 at 364.442 kb on - strand, within CA265_RS01435 at 364.442 kb on - strand, within CA265_RS01435 at 364.442 kb on - strand, within CA265_RS01435 at 364.442 kb on - strand, within CA265_RS01435 at 364.499 kb on + strand, within CA265_RS01435 at 364.500 kb on - strand, within CA265_RS01435 at 364.530 kb on - strand, within CA265_RS01435 at 364.555 kb on + strand, within CA265_RS01435 at 364.597 kb on + strand, within CA265_RS01435 at 364.604 kb on - strand, within CA265_RS01435 at 364.604 kb on - strand, within CA265_RS01435 at 364.645 kb on - strand, within CA265_RS01435 at 364.658 kb on - strand, within CA265_RS01435 at 364.689 kb on + strand, within CA265_RS01435 at 364.725 kb on + strand, within CA265_RS01435 at 364.730 kb on + strand, within CA265_RS01435 at 364.775 kb on + strand, within CA265_RS01435 at 364.775 kb on + strand, within CA265_RS01435 at 364.775 kb on + strand, within CA265_RS01435 at 364.776 kb on - strand, within CA265_RS01435 at 364.811 kb on - strand, within CA265_RS01435 at 364.849 kb on - strand, within CA265_RS01435 at 364.866 kb on + strand, within CA265_RS01435 at 364.892 kb on + strand, within CA265_RS01435 at 364.900 kb on + strand, within CA265_RS01435 at 364.900 kb on + strand, within CA265_RS01435 at 364.912 kb on + strand, within CA265_RS01435 at 364.913 kb on - strand, within CA265_RS01435 at 364.913 kb on - strand, within CA265_RS01435 at 364.913 kb on - strand, within CA265_RS01435 at 364.961 kb on + strand, within CA265_RS01435 at 365.017 kb on + strand, within CA265_RS01435 at 365.102 kb on - strand, within CA265_RS01435 at 365.103 kb on + strand, within CA265_RS01435 at 365.103 kb on + strand, within CA265_RS01435 at 365.175 kb on - strand, within CA265_RS01435 at 365.204 kb on - strand, within CA265_RS01435 at 365.256 kb on - strand, within CA265_RS01435 at 365.257 kb on + strand, within CA265_RS01435 at 365.257 kb on + strand, within CA265_RS01435 at 365.257 kb on + strand, within CA265_RS01435 at 365.258 kb on - strand, within CA265_RS01435 at 365.323 kb on + strand at 365.323 kb on + strand, within CA265_RS01435 at 365.386 kb on + strand at 365.412 kb on - strand at 365.483 kb on + strand at 365.527 kb on + strand at 365.528 kb on - strand at 365.606 kb on - strand at 365.606 kb on - strand at 365.661 kb on - strand at 365.661 kb on - strand at 365.672 kb on - strand at 365.732 kb on - strand at 365.781 kb on - strand at 365.860 kb on + strand, within CA265_RS01440 at 365.892 kb on + strand, within CA265_RS01440 at 365.958 kb on + strand, within CA265_RS01440 at 365.978 kb on + strand, within CA265_RS01440 at 365.991 kb on + strand, within CA265_RS01440 at 366.079 kb on + strand, within CA265_RS01440 at 366.239 kb on + strand, within CA265_RS01440 at 366.284 kb on + strand, within CA265_RS01440 at 366.284 kb on + strand, within CA265_RS01440 at 366.332 kb on + strand, within CA265_RS01440 at 366.332 kb on + strand, within CA265_RS01440 at 366.355 kb on - strand, within CA265_RS01440 at 366.355 kb on - strand, within CA265_RS01440 at 366.405 kb on - strand, within CA265_RS01440 at 366.442 kb on - strand, within CA265_RS01440 at 366.463 kb on - strand, within CA265_RS01440 at 366.566 kb on + strand, within CA265_RS01440 at 366.592 kb on + strand, within CA265_RS01440 at 366.592 kb on + strand, within CA265_RS01440 at 366.593 kb on - strand, within CA265_RS01440 at 366.599 kb on + strand, within CA265_RS01440 at 366.609 kb on - strand, within CA265_RS01440 at 366.642 kb on + strand, within CA265_RS01440 at 366.645 kb on + strand, within CA265_RS01440 at 366.646 kb on - strand, within CA265_RS01440 at 366.646 kb on - strand, within CA265_RS01440
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Tetracycline 0.0005 mg/ml remove 361,640 - CA265_RS01430 0.47 +0.4 361,648 + CA265_RS01430 0.47 +0.5 361,648 + CA265_RS01430 0.47 +0.0 361,648 + +2.1 361,716 + CA265_RS01430 0.51 +1.5 361,716 + CA265_RS01430 0.51 -0.9 361,767 - CA265_RS01430 0.54 -0.0 361,767 - CA265_RS01430 0.54 +0.2 361,836 - CA265_RS01430 0.58 -1.1 361,871 - CA265_RS01430 0.60 +0.0 361,976 + CA265_RS01430 0.66 -0.9 361,989 + CA265_RS01430 0.67 -0.3 361,993 + CA265_RS01430 0.67 +1.0 361,994 - CA265_RS01430 0.67 -0.0 362,053 - CA265_RS01430 0.71 -0.7 362,107 + CA265_RS01430 0.74 -0.1 362,144 - CA265_RS01430 0.76 +0.5 362,145 + CA265_RS01430 0.76 -0.3 362,146 - CA265_RS01430 0.76 -0.3 362,146 - CA265_RS01430 0.76 -1.7 362,168 - CA265_RS01430 0.78 -1.1 362,198 + CA265_RS01430 0.80 -0.2 362,257 + CA265_RS01430 0.83 -0.3 362,302 - CA265_RS01430 0.86 -1.2 362,338 + CA265_RS01430 0.88 +1.7 362,378 + +0.2 362,457 - +0.9 362,493 - +1.3 362,505 - -1.2 362,512 + -0.2 362,524 + +0.7 362,527 - -0.1 362,528 + -0.4 362,528 + +0.0 362,529 - +1.5 362,533 - -0.3 362,610 + +0.4 362,614 - -0.2 362,673 - +0.7 362,693 + -0.3 362,694 - -0.6 362,694 - -0.1 362,708 + +0.5 362,771 + +1.2 362,815 + -1.1 362,816 - -1.5 362,863 + -1.2 362,864 - -0.1 362,906 + CA265_RS01435 0.11 +0.4 363,011 + CA265_RS01435 0.14 +0.3 363,012 - CA265_RS01435 0.14 -0.1 363,018 - CA265_RS01435 0.15 -0.6 363,059 + CA265_RS01435 0.16 +1.4 363,076 - CA265_RS01435 0.16 +0.9 363,076 - CA265_RS01435 0.16 +0.7 363,088 + CA265_RS01435 0.17 -0.2 363,088 + CA265_RS01435 0.17 -2.5 363,088 + CA265_RS01435 0.17 +0.8 363,089 - CA265_RS01435 0.17 +0.7 363,089 - +0.5 363,111 + CA265_RS01435 0.18 -1.5 363,132 - CA265_RS01435 0.18 -0.7 363,233 + CA265_RS01435 0.21 -1.5 363,233 + CA265_RS01435 0.21 +0.2 363,299 - CA265_RS01435 0.24 -0.6 363,309 + CA265_RS01435 0.24 +0.4 363,326 - CA265_RS01435 0.24 -0.2 363,333 + CA265_RS01435 0.25 -0.7 363,386 - CA265_RS01435 0.26 +0.3 363,398 - CA265_RS01435 0.27 -0.2 363,459 - CA265_RS01435 0.29 -0.5 363,464 - CA265_RS01435 0.29 +0.4 363,480 + CA265_RS01435 0.29 -0.9 363,481 - CA265_RS01435 0.29 -0.3 363,536 + CA265_RS01435 0.31 -0.4 363,537 - CA265_RS01435 0.31 -0.1 363,593 + CA265_RS01435 0.33 +0.7 363,594 - CA265_RS01435 0.33 -0.8 363,655 - CA265_RS01435 0.35 +0.0 363,705 + CA265_RS01435 0.37 -0.2 363,828 + CA265_RS01435 0.40 +1.1 363,841 + CA265_RS01435 0.41 -0.1 363,863 - CA265_RS01435 0.42 -0.9 363,883 + CA265_RS01435 0.42 -0.3 363,906 + CA265_RS01435 0.43 -0.0 363,916 + CA265_RS01435 0.43 -0.0 363,982 + CA265_RS01435 0.45 -0.2 363,982 + CA265_RS01435 0.45 +0.7 363,992 + CA265_RS01435 0.46 -0.4 364,053 + CA265_RS01435 0.48 -1.2 364,054 - CA265_RS01435 0.48 -0.7 364,111 - CA265_RS01435 0.50 -0.5 364,136 - CA265_RS01435 0.50 -0.6 364,136 - CA265_RS01435 0.50 -0.2 364,138 - CA265_RS01435 0.50 +0.1 364,138 - CA265_RS01435 0.50 -0.2 364,188 + CA265_RS01435 0.52 +0.5 364,211 - CA265_RS01435 0.53 +0.3 364,212 + CA265_RS01435 0.53 +0.6 364,213 - CA265_RS01435 0.53 +0.3 364,347 - CA265_RS01435 0.57 -0.1 364,374 + CA265_RS01435 0.58 +0.4 364,432 + CA265_RS01435 0.60 +0.3 364,442 - CA265_RS01435 0.60 -1.0 364,442 - CA265_RS01435 0.60 -1.0 364,442 - CA265_RS01435 0.60 -0.7 364,442 - CA265_RS01435 0.60 -0.9 364,499 + CA265_RS01435 0.62 +0.4 364,500 - CA265_RS01435 0.62 +0.2 364,530 - CA265_RS01435 0.63 +0.2 364,555 + CA265_RS01435 0.64 +0.3 364,597 + CA265_RS01435 0.65 -0.5 364,604 - CA265_RS01435 0.65 +0.7 364,604 - CA265_RS01435 0.65 -0.8 364,645 - CA265_RS01435 0.67 -1.0 364,658 - CA265_RS01435 0.67 +0.5 364,689 + CA265_RS01435 0.68 -1.6 364,725 + CA265_RS01435 0.69 -0.7 364,730 + CA265_RS01435 0.69 -0.8 364,775 + CA265_RS01435 0.71 -0.5 364,775 + CA265_RS01435 0.71 -0.7 364,775 + CA265_RS01435 0.71 -0.2 364,776 - CA265_RS01435 0.71 +0.3 364,811 - CA265_RS01435 0.72 -0.7 364,849 - CA265_RS01435 0.73 -0.4 364,866 + CA265_RS01435 0.74 +2.2 364,892 + CA265_RS01435 0.75 -0.8 364,900 + CA265_RS01435 0.75 +0.2 364,900 + CA265_RS01435 0.75 -1.3 364,912 + CA265_RS01435 0.75 +0.5 364,913 - CA265_RS01435 0.75 +0.5 364,913 - CA265_RS01435 0.75 -0.1 364,913 - CA265_RS01435 0.75 -0.9 364,961 + CA265_RS01435 0.77 -1.2 365,017 + CA265_RS01435 0.79 +0.1 365,102 - CA265_RS01435 0.81 -0.5 365,103 + CA265_RS01435 0.81 +1.5 365,103 + CA265_RS01435 0.81 -0.6 365,175 - CA265_RS01435 0.84 -1.4 365,204 - CA265_RS01435 0.85 -0.2 365,256 - CA265_RS01435 0.86 -0.5 365,257 + CA265_RS01435 0.86 +0.4 365,257 + CA265_RS01435 0.86 +0.3 365,257 + CA265_RS01435 0.86 -0.4 365,258 - CA265_RS01435 0.86 +0.0 365,323 + +0.9 365,323 + CA265_RS01435 0.88 -1.2 365,386 + +0.3 365,412 - +0.9 365,483 + +1.0 365,527 + -0.2 365,528 - -0.2 365,606 - -0.5 365,606 - -0.1 365,661 - -0.0 365,661 - -0.6 365,672 - +0.3 365,732 - -0.2 365,781 - -1.0 365,860 + CA265_RS01440 0.12 +0.5 365,892 + CA265_RS01440 0.15 -0.5 365,958 + CA265_RS01440 0.20 -0.6 365,978 + CA265_RS01440 0.22 +0.7 365,991 + CA265_RS01440 0.23 +0.9 366,079 + CA265_RS01440 0.31 -0.0 366,239 + CA265_RS01440 0.44 +0.5 366,284 + CA265_RS01440 0.48 -0.5 366,284 + CA265_RS01440 0.48 +0.4 366,332 + CA265_RS01440 0.52 +0.1 366,332 + CA265_RS01440 0.52 -0.2 366,355 - CA265_RS01440 0.54 -0.3 366,355 - CA265_RS01440 0.54 -0.3 366,405 - CA265_RS01440 0.58 +0.1 366,442 - CA265_RS01440 0.61 +0.6 366,463 - CA265_RS01440 0.63 +0.0 366,566 + CA265_RS01440 0.72 +0.4 366,592 + CA265_RS01440 0.74 -0.8 366,592 + CA265_RS01440 0.74 +0.1 366,593 - CA265_RS01440 0.74 +0.2 366,599 + CA265_RS01440 0.75 +0.0 366,609 - CA265_RS01440 0.75 +0.3 366,642 + CA265_RS01440 0.78 +0.9 366,645 + CA265_RS01440 0.78 +0.1 366,646 - CA265_RS01440 0.78 +1.8 366,646 - CA265_RS01440 0.78 +0.0
Or see this region's nucleotide sequence