Experiment: R2A with Tetracycline 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00585 and CA265_RS00590 are separated by 74 nucleotides
CA265_RS00585: CA265_RS00585 - translocation/assembly module TamB, at 130,429 to 134,859
_RS00585
CA265_RS00590: CA265_RS00590 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD, at 134,934 to 135,935
_RS00590
Position (kb) 130
131
132
133
134
135 Strain fitness (log2 ratio) -2
-1
0
1
2 at 129.440 kb on + strand at 129.455 kb on - strand at 129.455 kb on - strand at 129.513 kb on + strand at 129.517 kb on - strand at 129.539 kb on + strand at 129.543 kb on - strand at 129.547 kb on + strand at 129.653 kb on - strand at 129.705 kb on - strand at 129.708 kb on - strand at 129.750 kb on + strand at 129.751 kb on - strand at 129.801 kb on - strand at 129.801 kb on - strand at 130.220 kb on + strand at 130.283 kb on - strand at 130.344 kb on - strand at 130.363 kb on + strand at 130.430 kb on + strand at 130.431 kb on - strand at 130.431 kb on - strand at 130.474 kb on - strand at 130.474 kb on - strand at 130.494 kb on + strand at 130.647 kb on + strand at 130.659 kb on + strand at 130.659 kb on + strand at 130.660 kb on - strand at 130.660 kb on - strand at 130.660 kb on - strand at 130.736 kb on - strand at 130.803 kb on + strand at 130.807 kb on - strand at 130.807 kb on - strand at 130.861 kb on + strand at 131.054 kb on - strand, within CA265_RS00585 at 131.054 kb on - strand, within CA265_RS00585 at 131.058 kb on - strand, within CA265_RS00585 at 131.079 kb on + strand, within CA265_RS00585 at 131.141 kb on - strand, within CA265_RS00585 at 131.153 kb on - strand, within CA265_RS00585 at 131.210 kb on + strand, within CA265_RS00585 at 131.210 kb on + strand, within CA265_RS00585 at 131.240 kb on + strand, within CA265_RS00585 at 131.240 kb on + strand, within CA265_RS00585 at 131.242 kb on + strand, within CA265_RS00585 at 131.242 kb on + strand, within CA265_RS00585 at 131.243 kb on - strand, within CA265_RS00585 at 131.243 kb on - strand, within CA265_RS00585 at 131.243 kb on - strand, within CA265_RS00585 at 131.243 kb on - strand, within CA265_RS00585 at 131.243 kb on - strand, within CA265_RS00585 at 131.243 kb on - strand, within CA265_RS00585 at 131.371 kb on - strand, within CA265_RS00585 at 131.431 kb on - strand, within CA265_RS00585 at 131.460 kb on + strand, within CA265_RS00585 at 131.461 kb on - strand, within CA265_RS00585 at 131.464 kb on + strand, within CA265_RS00585 at 131.464 kb on + strand, within CA265_RS00585 at 131.465 kb on - strand, within CA265_RS00585 at 131.465 kb on - strand, within CA265_RS00585 at 131.545 kb on + strand, within CA265_RS00585 at 131.564 kb on - strand, within CA265_RS00585 at 131.650 kb on - strand, within CA265_RS00585 at 131.652 kb on + strand, within CA265_RS00585 at 131.674 kb on - strand, within CA265_RS00585 at 131.720 kb on + strand, within CA265_RS00585 at 131.745 kb on + strand, within CA265_RS00585 at 131.749 kb on + strand, within CA265_RS00585 at 131.799 kb on + strand, within CA265_RS00585 at 131.800 kb on - strand, within CA265_RS00585 at 131.800 kb on - strand, within CA265_RS00585 at 131.809 kb on + strand, within CA265_RS00585 at 131.809 kb on + strand, within CA265_RS00585 at 131.816 kb on - strand, within CA265_RS00585 at 131.904 kb on + strand, within CA265_RS00585 at 131.918 kb on + strand, within CA265_RS00585 at 131.919 kb on - strand, within CA265_RS00585 at 131.919 kb on - strand, within CA265_RS00585 at 131.919 kb on - strand, within CA265_RS00585 at 131.919 kb on - strand, within CA265_RS00585 at 131.959 kb on + strand, within CA265_RS00585 at 132.148 kb on - strand, within CA265_RS00585 at 132.190 kb on + strand, within CA265_RS00585 at 132.247 kb on - strand, within CA265_RS00585 at 132.247 kb on - strand, within CA265_RS00585 at 132.301 kb on + strand, within CA265_RS00585 at 132.313 kb on + strand, within CA265_RS00585 at 132.475 kb on + strand, within CA265_RS00585 at 132.487 kb on - strand, within CA265_RS00585 at 132.523 kb on + strand, within CA265_RS00585 at 132.555 kb on + strand, within CA265_RS00585 at 132.577 kb on + strand, within CA265_RS00585 at 132.724 kb on - strand, within CA265_RS00585 at 132.735 kb on + strand, within CA265_RS00585 at 132.808 kb on - strand, within CA265_RS00585 at 132.810 kb on + strand at 132.811 kb on - strand, within CA265_RS00585 at 132.811 kb on - strand, within CA265_RS00585 at 132.917 kb on - strand, within CA265_RS00585 at 132.932 kb on - strand, within CA265_RS00585 at 132.937 kb on + strand, within CA265_RS00585 at 133.032 kb on - strand, within CA265_RS00585 at 133.053 kb on - strand, within CA265_RS00585 at 133.080 kb on - strand, within CA265_RS00585 at 133.103 kb on - strand, within CA265_RS00585 at 133.126 kb on + strand, within CA265_RS00585 at 133.156 kb on + strand, within CA265_RS00585 at 133.220 kb on - strand, within CA265_RS00585 at 133.234 kb on - strand, within CA265_RS00585 at 133.316 kb on - strand, within CA265_RS00585 at 133.498 kb on - strand, within CA265_RS00585 at 133.499 kb on + strand, within CA265_RS00585 at 133.500 kb on - strand, within CA265_RS00585 at 133.562 kb on + strand, within CA265_RS00585 at 133.562 kb on + strand, within CA265_RS00585 at 133.562 kb on + strand, within CA265_RS00585 at 133.562 kb on + strand, within CA265_RS00585 at 133.563 kb on - strand, within CA265_RS00585 at 133.563 kb on - strand at 133.563 kb on - strand, within CA265_RS00585 at 133.695 kb on + strand, within CA265_RS00585 at 133.695 kb on + strand, within CA265_RS00585 at 133.724 kb on + strand, within CA265_RS00585 at 133.725 kb on - strand, within CA265_RS00585 at 133.770 kb on + strand, within CA265_RS00585 at 133.771 kb on - strand, within CA265_RS00585 at 133.938 kb on + strand, within CA265_RS00585 at 133.963 kb on + strand, within CA265_RS00585 at 133.983 kb on + strand, within CA265_RS00585 at 133.984 kb on - strand, within CA265_RS00585 at 134.118 kb on + strand, within CA265_RS00585 at 134.118 kb on + strand, within CA265_RS00585 at 134.119 kb on - strand, within CA265_RS00585 at 134.122 kb on + strand, within CA265_RS00585 at 134.122 kb on + strand, within CA265_RS00585 at 134.122 kb on + strand, within CA265_RS00585 at 134.127 kb on - strand, within CA265_RS00585 at 134.127 kb on - strand, within CA265_RS00585 at 134.169 kb on - strand, within CA265_RS00585 at 134.233 kb on + strand, within CA265_RS00585 at 134.373 kb on + strand, within CA265_RS00585 at 134.374 kb on - strand, within CA265_RS00585 at 134.418 kb on - strand at 134.442 kb on - strand at 134.463 kb on + strand at 134.474 kb on + strand at 134.475 kb on - strand at 134.475 kb on - strand at 134.497 kb on + strand at 134.508 kb on + strand at 134.523 kb on - strand at 134.528 kb on - strand at 134.553 kb on + strand at 134.623 kb on - strand at 134.641 kb on - strand at 134.702 kb on - strand at 134.734 kb on - strand at 134.767 kb on - strand at 134.783 kb on + strand at 134.783 kb on + strand at 134.783 kb on + strand at 134.784 kb on - strand at 134.864 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Tetracycline 0.0005 mg/ml remove 129,440 + -0.0 129,455 - +0.8 129,455 - +0.6 129,513 + +2.5 129,517 - +0.1 129,539 + -0.1 129,543 - -1.5 129,547 + -0.8 129,653 - -0.4 129,705 - +0.1 129,708 - -0.1 129,750 + +0.0 129,751 - +0.3 129,801 - +0.7 129,801 - -0.4 130,220 + -1.1 130,283 - +0.9 130,344 - -0.2 130,363 + +1.3 130,430 + +0.1 130,431 - +0.3 130,431 - -0.8 130,474 - +0.1 130,474 - -1.6 130,494 + +0.7 130,647 + -0.7 130,659 + -0.7 130,659 + -1.6 130,660 - +1.0 130,660 - -0.7 130,660 - -0.8 130,736 - -1.6 130,803 + -0.1 130,807 - -2.3 130,807 - -0.7 130,861 + -0.4 131,054 - CA265_RS00585 0.14 -0.0 131,054 - CA265_RS00585 0.14 +0.4 131,058 - CA265_RS00585 0.14 +0.5 131,079 + CA265_RS00585 0.15 -1.1 131,141 - CA265_RS00585 0.16 -0.4 131,153 - CA265_RS00585 0.16 -0.5 131,210 + CA265_RS00585 0.18 -0.8 131,210 + CA265_RS00585 0.18 -0.5 131,240 + CA265_RS00585 0.18 -0.3 131,240 + CA265_RS00585 0.18 -0.6 131,242 + CA265_RS00585 0.18 -0.6 131,242 + CA265_RS00585 0.18 +0.5 131,243 - CA265_RS00585 0.18 -1.2 131,243 - CA265_RS00585 0.18 +0.9 131,243 - CA265_RS00585 0.18 +0.3 131,243 - CA265_RS00585 0.18 -1.0 131,243 - CA265_RS00585 0.18 -0.1 131,243 - CA265_RS00585 0.18 -1.6 131,371 - CA265_RS00585 0.21 -1.0 131,431 - CA265_RS00585 0.23 -2.1 131,460 + CA265_RS00585 0.23 +0.6 131,461 - CA265_RS00585 0.23 -0.6 131,464 + CA265_RS00585 0.23 -2.0 131,464 + CA265_RS00585 0.23 +0.1 131,465 - CA265_RS00585 0.23 -1.1 131,465 - CA265_RS00585 0.23 -0.8 131,545 + CA265_RS00585 0.25 -1.7 131,564 - CA265_RS00585 0.26 -0.7 131,650 - CA265_RS00585 0.28 -0.7 131,652 + CA265_RS00585 0.28 +1.3 131,674 - CA265_RS00585 0.28 -0.4 131,720 + CA265_RS00585 0.29 -0.8 131,745 + CA265_RS00585 0.30 -0.9 131,749 + CA265_RS00585 0.30 -0.6 131,799 + CA265_RS00585 0.31 -1.8 131,800 - CA265_RS00585 0.31 -0.4 131,800 - CA265_RS00585 0.31 -0.5 131,809 + CA265_RS00585 0.31 +0.4 131,809 + CA265_RS00585 0.31 -0.8 131,816 - CA265_RS00585 0.31 -0.1 131,904 + CA265_RS00585 0.33 -0.4 131,918 + CA265_RS00585 0.34 -1.4 131,919 - CA265_RS00585 0.34 -2.2 131,919 - CA265_RS00585 0.34 -0.3 131,919 - CA265_RS00585 0.34 -1.5 131,919 - CA265_RS00585 0.34 -1.0 131,959 + CA265_RS00585 0.35 -1.3 132,148 - CA265_RS00585 0.39 +0.4 132,190 + CA265_RS00585 0.40 -0.4 132,247 - CA265_RS00585 0.41 -1.4 132,247 - CA265_RS00585 0.41 -0.4 132,301 + CA265_RS00585 0.42 -0.7 132,313 + CA265_RS00585 0.43 -1.1 132,475 + CA265_RS00585 0.46 -0.8 132,487 - CA265_RS00585 0.46 -0.2 132,523 + CA265_RS00585 0.47 -0.7 132,555 + CA265_RS00585 0.48 -0.1 132,577 + CA265_RS00585 0.48 -1.7 132,724 - CA265_RS00585 0.52 -0.6 132,735 + CA265_RS00585 0.52 -0.4 132,808 - CA265_RS00585 0.54 -0.3 132,810 + -0.1 132,811 - CA265_RS00585 0.54 +0.5 132,811 - CA265_RS00585 0.54 -1.5 132,917 - CA265_RS00585 0.56 -1.8 132,932 - CA265_RS00585 0.56 -0.3 132,937 + CA265_RS00585 0.57 -1.0 133,032 - CA265_RS00585 0.59 -0.8 133,053 - CA265_RS00585 0.59 +0.2 133,080 - CA265_RS00585 0.60 -1.1 133,103 - CA265_RS00585 0.60 +0.2 133,126 + CA265_RS00585 0.61 -1.1 133,156 + CA265_RS00585 0.62 -1.3 133,220 - CA265_RS00585 0.63 -1.0 133,234 - CA265_RS00585 0.63 -0.7 133,316 - CA265_RS00585 0.65 -1.6 133,498 - CA265_RS00585 0.69 +0.9 133,499 + CA265_RS00585 0.69 -0.6 133,500 - CA265_RS00585 0.69 -0.8 133,562 + CA265_RS00585 0.71 +0.2 133,562 + CA265_RS00585 0.71 +0.8 133,562 + CA265_RS00585 0.71 +0.5 133,562 + CA265_RS00585 0.71 -1.4 133,563 - CA265_RS00585 0.71 -0.5 133,563 - +1.5 133,563 - CA265_RS00585 0.71 -1.3 133,695 + CA265_RS00585 0.74 +0.2 133,695 + CA265_RS00585 0.74 -0.2 133,724 + CA265_RS00585 0.74 -1.8 133,725 - CA265_RS00585 0.74 +0.2 133,770 + CA265_RS00585 0.75 -1.3 133,771 - CA265_RS00585 0.75 +0.5 133,938 + CA265_RS00585 0.79 -0.7 133,963 + CA265_RS00585 0.80 -0.5 133,983 + CA265_RS00585 0.80 +0.1 133,984 - CA265_RS00585 0.80 -2.7 134,118 + CA265_RS00585 0.83 -1.4 134,118 + CA265_RS00585 0.83 -0.9 134,119 - CA265_RS00585 0.83 -0.1 134,122 + CA265_RS00585 0.83 -0.6 134,122 + CA265_RS00585 0.83 -1.7 134,122 + CA265_RS00585 0.83 -1.3 134,127 - CA265_RS00585 0.83 -1.5 134,127 - CA265_RS00585 0.83 -0.9 134,169 - CA265_RS00585 0.84 +0.7 134,233 + CA265_RS00585 0.86 -0.3 134,373 + CA265_RS00585 0.89 +0.5 134,374 - CA265_RS00585 0.89 -0.1 134,418 - -2.4 134,442 - -2.7 134,463 + -1.1 134,474 + -0.8 134,475 - -0.7 134,475 - +0.5 134,497 + +1.5 134,508 + -0.7 134,523 - -0.7 134,528 - +0.2 134,553 + -0.7 134,623 - +0.8 134,641 - -0.2 134,702 - +1.0 134,734 - +0.1 134,767 - -0.7 134,783 + -2.6 134,783 + -0.8 134,783 + +0.7 134,784 - -1.0 134,864 - -1.2
Or see this region's nucleotide sequence