Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS16385

Experiment: reconstituted MRS with Pectin 10 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	reconstituted MRS with Pectin 10 mg/ml
1,432,832	+				-0.1
1,432,842	-				-2.6
1,432,859	+				+0.2
1,432,968	-				-0.7
1,433,042	+				-0.6
1,433,216	+				+1.5
1,433,223	+				+0.7
1,433,257	+				+0.7
1,433,257	+				+0.4
1,433,265	-				-1.4
1,433,276	+				+0.7
1,433,285	+				+0.3
1,433,322	-		BBR_RS16380	0.19	-1.0
1,433,327	+		BBR_RS16380	0.21	-0.7
1,433,366	-		BBR_RS16380	0.40	+0.8
1,433,374	+		BBR_RS16380	0.44	-1.6
1,433,376	-		BBR_RS16380	0.45	+0.2
1,433,382	-		BBR_RS16380	0.48	+0.9
1,433,382	-		BBR_RS16380	0.48	+0.1
1,433,382	-		BBR_RS16380	0.48	+0.9
1,433,462	-		BBR_RS16380	0.86	+0.5
1,433,521	+				-0.7
1,433,531	+				+1.0
1,433,568	+				-1.5
1,433,573	+				+0.6
1,433,581	-				-0.2
1,433,590	+				-0.1
1,433,660	-				-0.1
1,433,677	-				-0.1
1,433,679	-				-0.3
1,433,809	+				+0.3
1,433,816	+				-0.8
1,433,826	+				-0.5
1,433,826	+				+1.0
1,433,826	+				-0.5
1,433,829	-				+2.2
1,433,841	+				-0.4
1,433,841	+				+0.5
1,433,841	+				-0.2
1,433,850	+				+1.1
1,433,898	+		BBR_RS16385	0.30	+0.4
1,433,898	+		BBR_RS16385	0.30	+1.2
1,433,898	-		BBR_RS16385	0.30	+0.3
1,433,898	-		BBR_RS16385	0.30	-1.4
1,433,906	-		BBR_RS16385	0.33	+4.4
1,433,906	-		BBR_RS16385	0.33	-1.4
1,433,906	-		BBR_RS16385	0.33	+0.5
1,433,966	-		BBR_RS16385	0.59	+1.3
1,433,970	+		BBR_RS16385	0.61	+0.6
1,434,072	+				-0.6
1,434,072	+				+1.6
1,434,080	-				-1.0
1,434,109	-				+0.1
1,434,128	+				+0.9
1,434,130	+				-0.9
1,434,143	+				-1.3
1,434,143	+				-0.9
1,434,143	+				+0.7
1,434,151	-				+2.0
1,434,151	-				+0.8
1,434,151	-				-1.1
1,434,151	-				+0.1
1,434,151	-				+0.8
1,434,153	+				-0.2
1,434,200	+				-0.7
1,434,248	-		BBR_RS16390	0.11	-0.9
1,434,248	-		BBR_RS16390	0.11	-0.8
1,434,284	+		BBR_RS16390	0.15	-0.2
1,434,342	-		BBR_RS16390	0.21	-1.2
1,434,429	-		BBR_RS16390	0.31	-0.2
1,434,492	+		BBR_RS16390	0.38	+0.0
1,434,533	+		BBR_RS16390	0.42	-0.9
1,434,576	+		BBR_RS16390	0.47	+0.5
1,434,584	-		BBR_RS16390	0.48	-0.4
1,434,599	-		BBR_RS16390	0.49	+1.3
1,434,666	-		BBR_RS16390	0.57	+0.1
1,434,693	-		BBR_RS16390	0.60	+0.1
1,434,740	-		BBR_RS16390	0.65	-1.2
1,434,835	+		BBR_RS16390	0.75	+0.1
1,434,843	-		BBR_RS16390	0.76	+1.2
1,434,859	+		BBR_RS16390	0.78	+0.2
1,434,877	-		BBR_RS16390	0.80	+0.8
1,434,890	+		BBR_RS16390	0.81	+0.9
1,434,898	-		BBR_RS16390	0.82	-0.1
1,434,913	+		BBR_RS16390	0.84	+1.2
1,434,919	-		BBR_RS16390	0.84	+0.3
1,434,921	-		BBR_RS16390	0.84	-0.9
1,434,934	+		BBR_RS16390	0.86	-0.0
1,434,939	+		BBR_RS16390	0.86	-2.2
1,434,958	-		BBR_RS16390	0.88	-0.2
1,435,000	+				-0.2
1,435,000	+				-0.0
1,435,008	-				+0.9
1,435,036	-				-0.1
1,435,046	-				+3.8
1,435,048	+				+0.1