Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13565

Experiment: reconstituted MRS with Pectin 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13560 and BBR_RS13565 are separated by 7 nucleotidesBBR_RS13565 and BBR_RS20785 are separated by 299 nucleotidesBBR_RS20785 and BBR_RS13575 are separated by 39 nucleotides BBR_RS13560: BBR_RS13560 - MATE family efflux transporter, at 814,983 to 816,341 _RS13560 BBR_RS13565: BBR_RS13565 - DNA-(apurinic or apyrimidinic site) lyase endonuclease III base excision repair, at 816,349 to 817,041 _RS13565 BBR_RS20785: BBR_RS20785 - PadR family transcriptional regulator, at 817,341 to 817,487 _RS20785 BBR_RS13575: BBR_RS13575 - sugar O-acetyltransferase, at 817,527 to 818,201 _RS13575 Position (kb) 816 817 818Strain fitness (log2 ratio) -2 -1 0 1 2at 815.392 kb on - strand, within BBR_RS13560at 815.430 kb on - strand, within BBR_RS13560at 815.521 kb on + strand, within BBR_RS13560at 815.548 kb on - strand, within BBR_RS13560at 815.614 kb on - strand, within BBR_RS13560at 815.724 kb on - strand, within BBR_RS13560at 815.734 kb on - strand, within BBR_RS13560at 815.792 kb on + strand, within BBR_RS13560at 815.868 kb on - strand, within BBR_RS13560at 815.904 kb on - strand, within BBR_RS13560at 815.923 kb on + strand, within BBR_RS13560at 815.933 kb on + strand, within BBR_RS13560at 815.942 kb on + strand, within BBR_RS13560at 816.079 kb on - strand, within BBR_RS13560at 816.079 kb on - strand, within BBR_RS13560at 816.079 kb on - strand, within BBR_RS13560at 816.090 kb on + strand, within BBR_RS13560at 816.143 kb on + strand, within BBR_RS13560at 816.177 kb on + strand, within BBR_RS13560at 816.186 kb on - strand, within BBR_RS13560at 816.186 kb on - strand, within BBR_RS13560at 816.188 kb on + strand, within BBR_RS13560at 816.381 kb on + strandat 816.420 kb on + strand, within BBR_RS13565at 816.420 kb on + strand, within BBR_RS13565at 816.447 kb on - strand, within BBR_RS13565at 816.448 kb on - strand, within BBR_RS13565at 816.448 kb on - strand, within BBR_RS13565at 816.462 kb on - strand, within BBR_RS13565at 816.462 kb on - strand, within BBR_RS13565at 816.525 kb on - strand, within BBR_RS13565at 816.534 kb on - strand, within BBR_RS13565at 816.549 kb on + strand, within BBR_RS13565at 816.567 kb on + strand, within BBR_RS13565at 816.569 kb on - strand, within BBR_RS13565at 816.607 kb on - strand, within BBR_RS13565at 816.632 kb on + strand, within BBR_RS13565at 816.640 kb on - strand, within BBR_RS13565at 816.663 kb on + strand, within BBR_RS13565at 816.666 kb on - strand, within BBR_RS13565at 816.685 kb on - strand, within BBR_RS13565at 816.687 kb on + strand, within BBR_RS13565at 816.704 kb on - strand, within BBR_RS13565at 816.787 kb on + strand, within BBR_RS13565at 816.855 kb on - strand, within BBR_RS13565at 816.894 kb on + strand, within BBR_RS13565at 817.078 kb on + strandat 817.226 kb on + strandat 817.226 kb on + strandat 817.226 kb on + strandat 817.226 kb on + strandat 817.313 kb on - strandat 817.371 kb on - strand, within BBR_RS20785at 817.371 kb on - strand, within BBR_RS20785at 817.603 kb on + strand, within BBR_RS13575at 817.700 kb on - strand, within BBR_RS13575at 817.755 kb on + strand, within BBR_RS13575at 817.755 kb on + strand, within BBR_RS13575at 817.763 kb on - strand, within BBR_RS13575at 817.793 kb on + strand, within BBR_RS13575at 817.810 kb on - strand, within BBR_RS13575at 817.852 kb on - strand, within BBR_RS13575at 817.852 kb on - strand, within BBR_RS13575at 817.927 kb on + strand, within BBR_RS13575at 817.927 kb on + strand, within BBR_RS13575at 817.927 kb on + strand, within BBR_RS13575at 817.927 kb on + strand, within BBR_RS13575at 817.927 kb on + strand, within BBR_RS13575at 817.927 kb on + strand, within BBR_RS13575at 817.927 kb on + strand, within BBR_RS13575at 817.968 kb on + strand, within BBR_RS13575at 817.998 kb on - strand, within BBR_RS13575at 818.028 kb on + strand, within BBR_RS13575

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Per-strain Table

Position Strand Gene LocusTag Fraction reconstituted MRS with Pectin 10 mg/ml
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815,392 - BBR_RS13560 0.30 +1.2
815,430 - BBR_RS13560 0.33 +1.2
815,521 + BBR_RS13560 0.40 -0.8
815,548 - BBR_RS13560 0.42 -0.9
815,614 - BBR_RS13560 0.46 -0.7
815,724 - BBR_RS13560 0.55 +0.0
815,734 - BBR_RS13560 0.55 -1.3
815,792 + BBR_RS13560 0.60 +2.2
815,868 - BBR_RS13560 0.65 +0.3
815,904 - BBR_RS13560 0.68 -0.3
815,923 + BBR_RS13560 0.69 -1.1
815,933 + BBR_RS13560 0.70 -0.1
815,942 + BBR_RS13560 0.71 +0.4
816,079 - BBR_RS13560 0.81 +0.7
816,079 - BBR_RS13560 0.81 -0.0
816,079 - BBR_RS13560 0.81 +0.3
816,090 + BBR_RS13560 0.81 -0.3
816,143 + BBR_RS13560 0.85 -0.7
816,177 + BBR_RS13560 0.88 +0.3
816,186 - BBR_RS13560 0.89 -0.8
816,186 - BBR_RS13560 0.89 -0.8
816,188 + BBR_RS13560 0.89 -0.6
816,381 + -0.4
816,420 + BBR_RS13565 0.10 +1.0
816,420 + BBR_RS13565 0.10 +0.2
816,447 - BBR_RS13565 0.14 +1.8
816,448 - BBR_RS13565 0.14 +0.3
816,448 - BBR_RS13565 0.14 +1.0
816,462 - BBR_RS13565 0.16 -0.4
816,462 - BBR_RS13565 0.16 +0.7
816,525 - BBR_RS13565 0.25 +0.0
816,534 - BBR_RS13565 0.27 +0.7
816,549 + BBR_RS13565 0.29 +0.6
816,567 + BBR_RS13565 0.31 +0.0
816,569 - BBR_RS13565 0.32 -1.2
816,607 - BBR_RS13565 0.37 -0.0
816,632 + BBR_RS13565 0.41 +1.5
816,640 - BBR_RS13565 0.42 +0.9
816,663 + BBR_RS13565 0.45 +1.0
816,666 - BBR_RS13565 0.46 +0.7
816,685 - BBR_RS13565 0.48 +0.3
816,687 + BBR_RS13565 0.49 +0.2
816,704 - BBR_RS13565 0.51 +1.0
816,787 + BBR_RS13565 0.63 +1.1
816,855 - BBR_RS13565 0.73 -0.6
816,894 + BBR_RS13565 0.79 +0.4
817,078 + -2.0
817,226 + +0.1
817,226 + -1.1
817,226 + +0.0
817,226 + -1.1
817,313 - +1.5
817,371 - BBR_RS20785 0.20 -0.0
817,371 - BBR_RS20785 0.20 +0.3
817,603 + BBR_RS13575 0.11 +0.2
817,700 - BBR_RS13575 0.26 +0.7
817,755 + BBR_RS13575 0.34 -0.3
817,755 + BBR_RS13575 0.34 +0.6
817,763 - BBR_RS13575 0.35 +1.7
817,793 + BBR_RS13575 0.39 -0.4
817,810 - BBR_RS13575 0.42 +0.3
817,852 - BBR_RS13575 0.48 -0.4
817,852 - BBR_RS13575 0.48 +0.2
817,927 + BBR_RS13575 0.59 +0.1
817,927 + BBR_RS13575 0.59 +0.1
817,927 + BBR_RS13575 0.59 -0.2
817,927 + BBR_RS13575 0.59 +1.7
817,927 + BBR_RS13575 0.59 -0.7
817,927 + BBR_RS13575 0.59 +0.8
817,927 + BBR_RS13575 0.59 -2.0
817,968 + BBR_RS13575 0.65 +1.1
817,998 - BBR_RS13575 0.70 -0.5
818,028 + BBR_RS13575 0.74 +0.1

Or see this region's nucleotide sequence