Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_4461 and Ac3H11_4462 are separated by 22 nucleotides Ac3H11_4462 and Ac3H11_4463 overlap by 4 nucleotides Ac3H11_4463 and Ac3H11_4464 are separated by 45 nucleotides Ac3H11_4464 and Ac3H11_4693 are separated by 52 nucleotides
Ac3H11_4461 - Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-), at 43,412 to 44,710
_4461
Ac3H11_4462 - Probable proline rich signal peptide protein, at 44,733 to 45,344
_4462
Ac3H11_4463 - Nitrogen regulation protein NtrY (EC 2.7.3.-), at 45,341 to 47,632
_4463
Ac3H11_4464 - Probable two component response regulator transcription regulator protein, at 47,678 to 48,361
_4464
Ac3H11_4693 - tRNA-Phe-GAA, at 48,414 to 48,486
_4693
Position (kb) 45
46
47
48 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 44.513 kb on + strand, within Ac3H11_4461 at 44.513 kb on + strand, within Ac3H11_4461 at 44.513 kb on + strand, within Ac3H11_4461 at 44.513 kb on + strand, within Ac3H11_4461 at 44.513 kb on + strand, within Ac3H11_4461 at 44.513 kb on + strand, within Ac3H11_4461 at 44.513 kb on + strand, within Ac3H11_4461 at 44.514 kb on - strand, within Ac3H11_4461 at 44.514 kb on - strand, within Ac3H11_4461 at 44.514 kb on - strand, within Ac3H11_4461 at 44.514 kb on - strand, within Ac3H11_4461 at 44.514 kb on - strand, within Ac3H11_4461 at 44.514 kb on - strand, within Ac3H11_4461 at 44.613 kb on + strand at 44.613 kb on + strand at 44.613 kb on + strand at 44.708 kb on + strand at 44.708 kb on + strand at 45.518 kb on + strand at 45.518 kb on + strand at 47.616 kb on + strand at 47.633 kb on + strand at 47.633 kb on + strand at 47.633 kb on + strand at 48.359 kb on + strand at 48.359 kb on + strand at 48.359 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 44,513 + Ac3H11_4461 0.85 +1.1 44,513 + Ac3H11_4461 0.85 +0.2 44,513 + Ac3H11_4461 0.85 +0.1 44,513 + Ac3H11_4461 0.85 +0.4 44,513 + Ac3H11_4461 0.85 +0.3 44,513 + Ac3H11_4461 0.85 +0.6 44,513 + Ac3H11_4461 0.85 +0.0 44,514 - Ac3H11_4461 0.85 -1.3 44,514 - Ac3H11_4461 0.85 -2.1 44,514 - Ac3H11_4461 0.85 -0.5 44,514 - Ac3H11_4461 0.85 +0.4 44,514 - Ac3H11_4461 0.85 -0.9 44,514 - Ac3H11_4461 0.85 -0.6 44,613 + -0.2 44,613 + +0.9 44,613 + +0.2 44,708 + -2.4 44,708 + +0.5 45,518 + +0.6 45,518 + +1.4 47,616 + -0.6 47,633 + +0.3 47,633 + -0.1 47,633 + -0.9 48,359 + -0.5 48,359 + +2.8 48,359 + -0.3
Or see this region's nucleotide sequence