Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1943

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1941 and Ac3H11_1942 are separated by 181 nucleotidesAc3H11_1942 and Ac3H11_1943 overlap by 4 nucleotidesAc3H11_1943 and Ac3H11_1944 are separated by 187 nucleotidesAc3H11_1944 and Ac3H11_1945 are separated by 66 nucleotides Ac3H11_1941 - putative protein PaaI, possibly involved in aromatic compounds catabolism, at 156,928 to 157,413 _1941 Ac3H11_1942 - Phenylacetic acid degradation protein paaI, at 157,595 to 158,053 _1942 Ac3H11_1943 - Cu(I)-responsive transcriptional regulator, at 158,050 to 158,505 _1943 Ac3H11_1944 - COG1664: Integral membrane protein CcmA involved in cell shape determination, at 158,693 to 159,277 _1944 Ac3H11_1945 - Acyl-CoA hydrolase (EC 3.1.2.20), at 159,344 to 159,766 _1945 Position (kb) 158 159Strain fitness (log2 ratio) -2 -1 0 1 2at 157.105 kb on + strand, within Ac3H11_1941at 157.105 kb on + strand, within Ac3H11_1941at 157.112 kb on - strand, within Ac3H11_1941at 157.267 kb on + strand, within Ac3H11_1941at 157.268 kb on - strand, within Ac3H11_1941at 157.268 kb on - strand, within Ac3H11_1941at 157.268 kb on - strand, within Ac3H11_1941at 157.268 kb on - strand, within Ac3H11_1941at 157.399 kb on + strandat 157.399 kb on + strandat 157.399 kb on + strandat 157.399 kb on + strandat 157.400 kb on - strandat 157.400 kb on - strandat 157.400 kb on - strandat 157.400 kb on - strandat 157.418 kb on + strandat 157.419 kb on - strandat 157.487 kb on + strandat 157.487 kb on + strandat 157.488 kb on - strandat 157.496 kb on + strandat 157.496 kb on + strandat 157.496 kb on + strandat 157.497 kb on - strandat 157.497 kb on - strandat 157.497 kb on - strandat 157.497 kb on - strandat 157.500 kb on + strandat 157.500 kb on + strandat 157.500 kb on + strandat 157.500 kb on + strandat 157.500 kb on + strandat 157.500 kb on + strandat 157.500 kb on + strandat 157.501 kb on - strandat 157.501 kb on - strandat 157.506 kb on + strandat 157.507 kb on - strandat 157.860 kb on + strand, within Ac3H11_1942at 157.861 kb on - strand, within Ac3H11_1942at 157.861 kb on - strand, within Ac3H11_1942at 157.946 kb on - strand, within Ac3H11_1942at 158.330 kb on - strand, within Ac3H11_1943at 158.448 kb on - strand, within Ac3H11_1943at 158.497 kb on + strandat 158.497 kb on + strandat 158.517 kb on + strandat 158.517 kb on + strandat 158.518 kb on - strandat 158.518 kb on - strandat 158.518 kb on - strandat 158.518 kb on - strandat 158.518 kb on - strandat 158.665 kb on + strandat 158.666 kb on - strandat 158.666 kb on - strandat 159.083 kb on + strand, within Ac3H11_1944at 159.284 kb on + strandat 159.285 kb on - strandat 159.391 kb on + strand, within Ac3H11_1945at 159.391 kb on + strand, within Ac3H11_1945at 159.405 kb on + strand, within Ac3H11_1945at 159.405 kb on + strand, within Ac3H11_1945at 159.405 kb on + strand, within Ac3H11_1945at 159.405 kb on + strand, within Ac3H11_1945at 159.406 kb on - strand, within Ac3H11_1945at 159.406 kb on - strand, within Ac3H11_1945at 159.406 kb on - strand, within Ac3H11_1945at 159.435 kb on + strand, within Ac3H11_1945at 159.435 kb on + strand, within Ac3H11_1945at 159.435 kb on + strand, within Ac3H11_1945at 159.435 kb on + strand, within Ac3H11_1945at 159.435 kb on + strand, within Ac3H11_1945at 159.435 kb on + strand, within Ac3H11_1945at 159.435 kb on + strand, within Ac3H11_1945at 159.435 kb on + strand, within Ac3H11_1945at 159.436 kb on - strand, within Ac3H11_1945at 159.436 kb on - strand, within Ac3H11_1945at 159.436 kb on - strand, within Ac3H11_1945at 159.436 kb on - strand, within Ac3H11_1945at 159.436 kb on - strand, within Ac3H11_1945at 159.465 kb on + strand, within Ac3H11_1945at 159.465 kb on + strand, within Ac3H11_1945at 159.465 kb on + strand, within Ac3H11_1945at 159.465 kb on + strand, within Ac3H11_1945at 159.465 kb on + strand, within Ac3H11_1945at 159.465 kb on + strand, within Ac3H11_1945at 159.465 kb on + strand, within Ac3H11_1945at 159.465 kb on + strand, within Ac3H11_1945at 159.466 kb on - strand, within Ac3H11_1945at 159.466 kb on - strand, within Ac3H11_1945at 159.466 kb on - strand, within Ac3H11_1945at 159.466 kb on - strand, within Ac3H11_1945

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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157,105 + Ac3H11_1941 0.36 +0.5
157,105 + Ac3H11_1941 0.36 -0.3
157,112 - Ac3H11_1941 0.38 +1.1
157,267 + Ac3H11_1941 0.70 +0.7
157,268 - Ac3H11_1941 0.70 +0.1
157,268 - Ac3H11_1941 0.70 +0.5
157,268 - Ac3H11_1941 0.70 -0.4
157,268 - Ac3H11_1941 0.70 -0.3
157,399 + +0.2
157,399 + +0.2
157,399 + +0.3
157,399 + -0.6
157,400 - -0.3
157,400 - +1.8
157,400 - -0.6
157,400 - +0.1
157,418 + +1.1
157,419 - +0.1
157,487 + +0.4
157,487 + +0.5
157,488 - +0.2
157,496 + +0.5
157,496 + -0.7
157,496 + +0.4
157,497 - +0.2
157,497 - +0.5
157,497 - +0.4
157,497 - +0.6
157,500 + +0.1
157,500 + +0.4
157,500 + +0.5
157,500 + -0.9
157,500 + -0.3
157,500 + +0.7
157,500 + +0.4
157,501 - +0.1
157,501 - -0.1
157,506 + +1.3
157,507 - -2.2
157,860 + Ac3H11_1942 0.58 -0.1
157,861 - Ac3H11_1942 0.58 -0.7
157,861 - Ac3H11_1942 0.58 +0.1
157,946 - Ac3H11_1942 0.76 -2.1
158,330 - Ac3H11_1943 0.61 -0.2
158,448 - Ac3H11_1943 0.87 +0.6
158,497 + +0.3
158,497 + -1.0
158,517 + -1.2
158,517 + -0.5
158,518 - +0.1
158,518 - +0.3
158,518 - +0.2
158,518 - -0.2
158,518 - +0.8
158,665 + -2.1
158,666 - -1.5
158,666 - +1.1
159,083 + Ac3H11_1944 0.67 -0.3
159,284 + -0.5
159,285 - +0.4
159,391 + Ac3H11_1945 0.11 -1.0
159,391 + Ac3H11_1945 0.11 -0.1
159,405 + Ac3H11_1945 0.14 -0.3
159,405 + Ac3H11_1945 0.14 +0.7
159,405 + Ac3H11_1945 0.14 +0.2
159,405 + Ac3H11_1945 0.14 +0.5
159,406 - Ac3H11_1945 0.15 -1.1
159,406 - Ac3H11_1945 0.15 -0.5
159,406 - Ac3H11_1945 0.15 +0.4
159,435 + Ac3H11_1945 0.22 +0.3
159,435 + Ac3H11_1945 0.22 -0.1
159,435 + Ac3H11_1945 0.22 +0.3
159,435 + Ac3H11_1945 0.22 +0.2
159,435 + Ac3H11_1945 0.22 -0.4
159,435 + Ac3H11_1945 0.22 -0.7
159,435 + Ac3H11_1945 0.22 -0.0
159,435 + Ac3H11_1945 0.22 -1.1
159,436 - Ac3H11_1945 0.22 +0.2
159,436 - Ac3H11_1945 0.22 +0.9
159,436 - Ac3H11_1945 0.22 +1.0
159,436 - Ac3H11_1945 0.22 +0.4
159,436 - Ac3H11_1945 0.22 +0.2
159,465 + Ac3H11_1945 0.29 +0.4
159,465 + Ac3H11_1945 0.29 -0.3
159,465 + Ac3H11_1945 0.29 -0.4
159,465 + Ac3H11_1945 0.29 +0.1
159,465 + Ac3H11_1945 0.29 +0.7
159,465 + Ac3H11_1945 0.29 +0.2
159,465 + Ac3H11_1945 0.29 +0.8
159,465 + Ac3H11_1945 0.29 +0.1
159,466 - Ac3H11_1945 0.29 +0.2
159,466 - Ac3H11_1945 0.29 +0.4
159,466 - Ac3H11_1945 0.29 -0.4
159,466 - Ac3H11_1945 0.29 -0.9

Or see this region's nucleotide sequence