Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_24740 and AO353_24745 are separated by 9 nucleotides AO353_24745 and AO353_24750 are separated by 280 nucleotides AO353_24750 and AO353_24755 overlap by 4 nucleotides
AO353_24740: AO353_24740 - hypothetical protein, at 5,453,414 to 5,453,800
_24740
AO353_24745: AO353_24745 - hypothetical protein, at 5,453,810 to 5,454,034
_24745
AO353_24750: AO353_24750 - DNA damage response nuclease (from data) , at 5,454,315 to 5,455,967
_24750
AO353_24755: AO353_24755 - ATP-dependent DNA helicase, at 5,455,964 to 5,458,228
_24755
Position (kb)
5454
5455
5456 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 5453.321 kb on - strand at 5453.321 kb on - strand at 5453.339 kb on + strand at 5453.339 kb on + strand at 5453.339 kb on + strand at 5453.339 kb on + strand at 5453.339 kb on + strand at 5453.340 kb on - strand at 5453.340 kb on - strand at 5453.419 kb on + strand at 5453.419 kb on + strand at 5453.513 kb on + strand, within AO353_24740 at 5453.520 kb on + strand, within AO353_24740 at 5453.521 kb on - strand, within AO353_24740 at 5453.662 kb on + strand, within AO353_24740 at 5453.663 kb on - strand, within AO353_24740 at 5453.663 kb on - strand, within AO353_24740 at 5453.693 kb on + strand, within AO353_24740 at 5453.931 kb on + strand, within AO353_24745 at 5453.931 kb on + strand, within AO353_24745 at 5453.982 kb on - strand, within AO353_24745 at 5454.023 kb on - strand at 5454.023 kb on - strand at 5454.029 kb on - strand at 5454.038 kb on + strand at 5454.039 kb on - strand at 5454.039 kb on - strand at 5454.050 kb on - strand at 5454.050 kb on - strand at 5454.178 kb on + strand at 5454.178 kb on + strand at 5454.179 kb on - strand at 5454.179 kb on - strand at 5454.179 kb on - strand at 5454.179 kb on - strand at 5454.215 kb on - strand at 5454.311 kb on - strand at 5454.345 kb on + strand at 5454.345 kb on + strand at 5454.345 kb on + strand at 5454.345 kb on + strand at 5454.346 kb on - strand at 5454.346 kb on - strand at 5454.346 kb on - strand at 5454.348 kb on + strand at 5454.349 kb on - strand at 5454.349 kb on - strand at 5454.349 kb on - strand at 5454.393 kb on + strand at 5454.393 kb on + strand at 5454.394 kb on - strand at 5454.525 kb on + strand, within AO353_24750 at 5454.535 kb on + strand, within AO353_24750 at 5454.633 kb on - strand, within AO353_24750 at 5454.633 kb on - strand, within AO353_24750 at 5454.878 kb on + strand, within AO353_24750 at 5454.878 kb on + strand, within AO353_24750 at 5454.878 kb on + strand, within AO353_24750 at 5454.879 kb on - strand, within AO353_24750 at 5454.882 kb on + strand, within AO353_24750 at 5454.951 kb on + strand, within AO353_24750 at 5454.952 kb on - strand, within AO353_24750 at 5454.952 kb on - strand, within AO353_24750 at 5454.952 kb on - strand, within AO353_24750 at 5454.952 kb on - strand, within AO353_24750 at 5454.952 kb on - strand, within AO353_24750 at 5455.292 kb on + strand, within AO353_24750 at 5455.292 kb on + strand, within AO353_24750 at 5455.292 kb on + strand, within AO353_24750 at 5455.392 kb on + strand, within AO353_24750 at 5455.393 kb on - strand, within AO353_24750 at 5455.393 kb on - strand, within AO353_24750 at 5455.434 kb on + strand, within AO353_24750 at 5455.434 kb on + strand, within AO353_24750 at 5455.434 kb on + strand, within AO353_24750 at 5455.435 kb on - strand, within AO353_24750 at 5455.435 kb on - strand, within AO353_24750 at 5455.435 kb on - strand, within AO353_24750 at 5455.836 kb on + strand at 5455.938 kb on + strand at 5455.938 kb on + strand at 5455.939 kb on - strand at 5455.970 kb on + strand at 5455.970 kb on + strand at 5455.970 kb on + strand at 5455.970 kb on + strand at 5455.971 kb on - strand at 5455.971 kb on - strand at 5455.971 kb on - strand at 5455.971 kb on - strand at 5455.971 kb on - strand at 5455.971 kb on - strand at 5455.971 kb on - strand at 5455.971 kb on - strand at 5455.971 kb on - strand at 5455.971 kb on - strand at 5455.973 kb on - strand at 5456.105 kb on + strand at 5456.136 kb on - strand at 5456.210 kb on + strand, within AO353_24755 at 5456.210 kb on + strand, within AO353_24755 at 5456.211 kb on - strand, within AO353_24755 at 5456.277 kb on - strand, within AO353_24755 at 5456.333 kb on + strand, within AO353_24755 at 5456.333 kb on + strand, within AO353_24755 at 5456.334 kb on - strand, within AO353_24755 at 5456.487 kb on + strand, within AO353_24755 at 5456.746 kb on - strand, within AO353_24755 at 5456.843 kb on + strand, within AO353_24755 at 5456.843 kb on + strand, within AO353_24755 at 5456.934 kb on + strand, within AO353_24755 at 5456.934 kb on + strand, within AO353_24755 at 5456.934 kb on + strand, within AO353_24755 at 5456.934 kb on + strand, within AO353_24755 at 5456.934 kb on + strand, within AO353_24755 at 5456.934 kb on + strand, within AO353_24755 at 5456.935 kb on - strand, within AO353_24755 at 5456.935 kb on - strand, within AO353_24755 at 5456.935 kb on - strand, within AO353_24755 at 5456.942 kb on + strand, within AO353_24755 at 5456.945 kb on + strand, within AO353_24755 at 5456.945 kb on + strand, within AO353_24755 at 5456.946 kb on - strand, within AO353_24755
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 5,453,321 - -0.9 5,453,321 - -0.9 5,453,339 + +1.5 5,453,339 + +1.4 5,453,339 + -0.1 5,453,339 + -0.2 5,453,339 + -0.2 5,453,340 - -0.2 5,453,340 - -1.7 5,453,419 + -0.0 5,453,419 + +0.6 5,453,513 + AO353_24740 0.26 -0.2 5,453,520 + AO353_24740 0.27 -1.1 5,453,521 - AO353_24740 0.28 +0.3 5,453,662 + AO353_24740 0.64 -0.3 5,453,663 - AO353_24740 0.64 +1.6 5,453,663 - AO353_24740 0.64 +0.7 5,453,693 + AO353_24740 0.72 +0.6 5,453,931 + AO353_24745 0.54 -1.2 5,453,931 + AO353_24745 0.54 +0.2 5,453,982 - AO353_24745 0.76 +0.5 5,454,023 - +0.3 5,454,023 - +1.0 5,454,029 - +1.7 5,454,038 + -0.0 5,454,039 - +2.5 5,454,039 - +0.9 5,454,050 - -0.5 5,454,050 - -0.5 5,454,178 + +0.5 5,454,178 + +3.5 5,454,179 - -0.3 5,454,179 - -1.0 5,454,179 - -1.3 5,454,179 - -0.2 5,454,215 - -0.9 5,454,311 - -0.0 5,454,345 + +0.8 5,454,345 + +0.1 5,454,345 + +0.4 5,454,345 + -0.4 5,454,346 - +1.1 5,454,346 - +0.5 5,454,346 - +0.9 5,454,348 + -1.2 5,454,349 - -0.2 5,454,349 - +1.1 5,454,349 - -0.5 5,454,393 + -2.0 5,454,393 + +1.1 5,454,394 - +1.3 5,454,525 + AO353_24750 0.13 +4.2 5,454,535 + AO353_24750 0.13 -1.0 5,454,633 - AO353_24750 0.19 +0.4 5,454,633 - AO353_24750 0.19 -1.0 5,454,878 + AO353_24750 0.34 +0.2 5,454,878 + AO353_24750 0.34 +0.4 5,454,878 + AO353_24750 0.34 -0.2 5,454,879 - AO353_24750 0.34 +2.9 5,454,882 + AO353_24750 0.34 -0.8 5,454,951 + AO353_24750 0.38 +0.9 5,454,952 - AO353_24750 0.39 -0.3 5,454,952 - AO353_24750 0.39 -1.1 5,454,952 - AO353_24750 0.39 -0.4 5,454,952 - AO353_24750 0.39 -1.0 5,454,952 - AO353_24750 0.39 -2.1 5,455,292 + AO353_24750 0.59 -0.1 5,455,292 + AO353_24750 0.59 -0.7 5,455,292 + AO353_24750 0.59 -0.1 5,455,392 + AO353_24750 0.65 +0.9 5,455,393 - AO353_24750 0.65 +1.2 5,455,393 - AO353_24750 0.65 +1.1 5,455,434 + AO353_24750 0.68 +0.1 5,455,434 + AO353_24750 0.68 +0.4 5,455,434 + AO353_24750 0.68 -0.5 5,455,435 - AO353_24750 0.68 +0.2 5,455,435 - AO353_24750 0.68 +0.8 5,455,435 - AO353_24750 0.68 -0.0 5,455,836 + +0.3 5,455,938 + +1.4 5,455,938 + -0.3 5,455,939 - -1.4 5,455,970 + -0.2 5,455,970 + -0.9 5,455,970 + +0.8 5,455,970 + -1.0 5,455,971 - -2.0 5,455,971 - +1.1 5,455,971 - +0.4 5,455,971 - +1.0 5,455,971 - +0.7 5,455,971 - +1.6 5,455,971 - -1.1 5,455,971 - -1.3 5,455,971 - -1.3 5,455,971 - +0.5 5,455,973 - +1.0 5,456,105 + -0.4 5,456,136 - +0.5 5,456,210 + AO353_24755 0.11 -0.7 5,456,210 + AO353_24755 0.11 +0.9 5,456,211 - AO353_24755 0.11 +1.1 5,456,277 - AO353_24755 0.14 -1.9 5,456,333 + AO353_24755 0.16 -1.5 5,456,333 + AO353_24755 0.16 -1.0 5,456,334 - AO353_24755 0.16 +0.5 5,456,487 + AO353_24755 0.23 +1.0 5,456,746 - AO353_24755 0.35 +0.7 5,456,843 + AO353_24755 0.39 +0.5 5,456,843 + AO353_24755 0.39 -0.9 5,456,934 + AO353_24755 0.43 +2.1 5,456,934 + AO353_24755 0.43 -0.0 5,456,934 + AO353_24755 0.43 -0.9 5,456,934 + AO353_24755 0.43 +0.1 5,456,934 + AO353_24755 0.43 +0.6 5,456,934 + AO353_24755 0.43 +1.7 5,456,935 - AO353_24755 0.43 -0.5 5,456,935 - AO353_24755 0.43 -0.7 5,456,935 - AO353_24755 0.43 +0.7 5,456,942 + AO353_24755 0.43 +0.0 5,456,945 + AO353_24755 0.43 -0.5 5,456,945 + AO353_24755 0.43 -1.0 5,456,946 - AO353_24755 0.43 -1.0
Or see this region's nucleotide sequence