Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_24750

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_24740 and AO353_24745 are separated by 9 nucleotidesAO353_24745 and AO353_24750 are separated by 280 nucleotidesAO353_24750 and AO353_24755 overlap by 4 nucleotides AO353_24740: AO353_24740 - hypothetical protein, at 5,453,414 to 5,453,800 _24740 AO353_24745: AO353_24745 - hypothetical protein, at 5,453,810 to 5,454,034 _24745 AO353_24750: AO353_24750 - DNA damage response nuclease (from data), at 5,454,315 to 5,455,967 _24750 AO353_24755: AO353_24755 - ATP-dependent DNA helicase, at 5,455,964 to 5,458,228 _24755 Position (kb) 5454 5455 5456Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 5453.321 kb on - strandat 5453.321 kb on - strandat 5453.339 kb on + strandat 5453.339 kb on + strandat 5453.339 kb on + strandat 5453.339 kb on + strandat 5453.339 kb on + strandat 5453.340 kb on - strandat 5453.340 kb on - strandat 5453.419 kb on + strandat 5453.419 kb on + strandat 5453.513 kb on + strand, within AO353_24740at 5453.520 kb on + strand, within AO353_24740at 5453.521 kb on - strand, within AO353_24740at 5453.662 kb on + strand, within AO353_24740at 5453.663 kb on - strand, within AO353_24740at 5453.663 kb on - strand, within AO353_24740at 5453.693 kb on + strand, within AO353_24740at 5453.931 kb on + strand, within AO353_24745at 5453.931 kb on + strand, within AO353_24745at 5453.982 kb on - strand, within AO353_24745at 5454.023 kb on - strandat 5454.023 kb on - strandat 5454.029 kb on - strandat 5454.038 kb on + strandat 5454.039 kb on - strandat 5454.039 kb on - strandat 5454.050 kb on - strandat 5454.050 kb on - strandat 5454.178 kb on + strandat 5454.178 kb on + strandat 5454.179 kb on - strandat 5454.179 kb on - strandat 5454.179 kb on - strandat 5454.179 kb on - strandat 5454.215 kb on - strandat 5454.311 kb on - strandat 5454.345 kb on + strandat 5454.345 kb on + strandat 5454.345 kb on + strandat 5454.345 kb on + strandat 5454.346 kb on - strandat 5454.346 kb on - strandat 5454.346 kb on - strandat 5454.348 kb on + strandat 5454.349 kb on - strandat 5454.349 kb on - strandat 5454.349 kb on - strandat 5454.393 kb on + strandat 5454.393 kb on + strandat 5454.394 kb on - strandat 5454.525 kb on + strand, within AO353_24750at 5454.535 kb on + strand, within AO353_24750at 5454.633 kb on - strand, within AO353_24750at 5454.633 kb on - strand, within AO353_24750at 5454.878 kb on + strand, within AO353_24750at 5454.878 kb on + strand, within AO353_24750at 5454.878 kb on + strand, within AO353_24750at 5454.879 kb on - strand, within AO353_24750at 5454.882 kb on + strand, within AO353_24750at 5454.951 kb on + strand, within AO353_24750at 5454.952 kb on - strand, within AO353_24750at 5454.952 kb on - strand, within AO353_24750at 5454.952 kb on - strand, within AO353_24750at 5454.952 kb on - strand, within AO353_24750at 5454.952 kb on - strand, within AO353_24750at 5455.292 kb on + strand, within AO353_24750at 5455.292 kb on + strand, within AO353_24750at 5455.292 kb on + strand, within AO353_24750at 5455.392 kb on + strand, within AO353_24750at 5455.393 kb on - strand, within AO353_24750at 5455.393 kb on - strand, within AO353_24750at 5455.434 kb on + strand, within AO353_24750at 5455.434 kb on + strand, within AO353_24750at 5455.434 kb on + strand, within AO353_24750at 5455.435 kb on - strand, within AO353_24750at 5455.435 kb on - strand, within AO353_24750at 5455.435 kb on - strand, within AO353_24750at 5455.836 kb on + strandat 5455.938 kb on + strandat 5455.938 kb on + strandat 5455.939 kb on - strandat 5455.970 kb on + strandat 5455.970 kb on + strandat 5455.970 kb on + strandat 5455.970 kb on + strandat 5455.971 kb on - strandat 5455.971 kb on - strandat 5455.971 kb on - strandat 5455.971 kb on - strandat 5455.971 kb on - strandat 5455.971 kb on - strandat 5455.971 kb on - strandat 5455.971 kb on - strandat 5455.971 kb on - strandat 5455.971 kb on - strandat 5455.973 kb on - strandat 5456.105 kb on + strandat 5456.136 kb on - strandat 5456.210 kb on + strand, within AO353_24755at 5456.210 kb on + strand, within AO353_24755at 5456.211 kb on - strand, within AO353_24755at 5456.277 kb on - strand, within AO353_24755at 5456.333 kb on + strand, within AO353_24755at 5456.333 kb on + strand, within AO353_24755at 5456.334 kb on - strand, within AO353_24755at 5456.487 kb on + strand, within AO353_24755at 5456.746 kb on - strand, within AO353_24755at 5456.843 kb on + strand, within AO353_24755at 5456.843 kb on + strand, within AO353_24755at 5456.934 kb on + strand, within AO353_24755at 5456.934 kb on + strand, within AO353_24755at 5456.934 kb on + strand, within AO353_24755at 5456.934 kb on + strand, within AO353_24755at 5456.934 kb on + strand, within AO353_24755at 5456.934 kb on + strand, within AO353_24755at 5456.935 kb on - strand, within AO353_24755at 5456.935 kb on - strand, within AO353_24755at 5456.935 kb on - strand, within AO353_24755at 5456.942 kb on + strand, within AO353_24755at 5456.945 kb on + strand, within AO353_24755at 5456.945 kb on + strand, within AO353_24755at 5456.946 kb on - strand, within AO353_24755

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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5,453,321 - -0.9
5,453,321 - -0.9
5,453,339 + +1.5
5,453,339 + +1.4
5,453,339 + -0.1
5,453,339 + -0.2
5,453,339 + -0.2
5,453,340 - -0.2
5,453,340 - -1.7
5,453,419 + -0.0
5,453,419 + +0.6
5,453,513 + AO353_24740 0.26 -0.2
5,453,520 + AO353_24740 0.27 -1.1
5,453,521 - AO353_24740 0.28 +0.3
5,453,662 + AO353_24740 0.64 -0.3
5,453,663 - AO353_24740 0.64 +1.6
5,453,663 - AO353_24740 0.64 +0.7
5,453,693 + AO353_24740 0.72 +0.6
5,453,931 + AO353_24745 0.54 -1.2
5,453,931 + AO353_24745 0.54 +0.2
5,453,982 - AO353_24745 0.76 +0.5
5,454,023 - +0.3
5,454,023 - +1.0
5,454,029 - +1.7
5,454,038 + -0.0
5,454,039 - +2.5
5,454,039 - +0.9
5,454,050 - -0.5
5,454,050 - -0.5
5,454,178 + +0.5
5,454,178 + +3.5
5,454,179 - -0.3
5,454,179 - -1.0
5,454,179 - -1.3
5,454,179 - -0.2
5,454,215 - -0.9
5,454,311 - -0.0
5,454,345 + +0.8
5,454,345 + +0.1
5,454,345 + +0.4
5,454,345 + -0.4
5,454,346 - +1.1
5,454,346 - +0.5
5,454,346 - +0.9
5,454,348 + -1.2
5,454,349 - -0.2
5,454,349 - +1.1
5,454,349 - -0.5
5,454,393 + -2.0
5,454,393 + +1.1
5,454,394 - +1.3
5,454,525 + AO353_24750 0.13 +4.2
5,454,535 + AO353_24750 0.13 -1.0
5,454,633 - AO353_24750 0.19 +0.4
5,454,633 - AO353_24750 0.19 -1.0
5,454,878 + AO353_24750 0.34 +0.2
5,454,878 + AO353_24750 0.34 +0.4
5,454,878 + AO353_24750 0.34 -0.2
5,454,879 - AO353_24750 0.34 +2.9
5,454,882 + AO353_24750 0.34 -0.8
5,454,951 + AO353_24750 0.38 +0.9
5,454,952 - AO353_24750 0.39 -0.3
5,454,952 - AO353_24750 0.39 -1.1
5,454,952 - AO353_24750 0.39 -0.4
5,454,952 - AO353_24750 0.39 -1.0
5,454,952 - AO353_24750 0.39 -2.1
5,455,292 + AO353_24750 0.59 -0.1
5,455,292 + AO353_24750 0.59 -0.7
5,455,292 + AO353_24750 0.59 -0.1
5,455,392 + AO353_24750 0.65 +0.9
5,455,393 - AO353_24750 0.65 +1.2
5,455,393 - AO353_24750 0.65 +1.1
5,455,434 + AO353_24750 0.68 +0.1
5,455,434 + AO353_24750 0.68 +0.4
5,455,434 + AO353_24750 0.68 -0.5
5,455,435 - AO353_24750 0.68 +0.2
5,455,435 - AO353_24750 0.68 +0.8
5,455,435 - AO353_24750 0.68 -0.0
5,455,836 + +0.3
5,455,938 + +1.4
5,455,938 + -0.3
5,455,939 - -1.4
5,455,970 + -0.2
5,455,970 + -0.9
5,455,970 + +0.8
5,455,970 + -1.0
5,455,971 - -2.0
5,455,971 - +1.1
5,455,971 - +0.4
5,455,971 - +1.0
5,455,971 - +0.7
5,455,971 - +1.6
5,455,971 - -1.1
5,455,971 - -1.3
5,455,971 - -1.3
5,455,971 - +0.5
5,455,973 - +1.0
5,456,105 + -0.4
5,456,136 - +0.5
5,456,210 + AO353_24755 0.11 -0.7
5,456,210 + AO353_24755 0.11 +0.9
5,456,211 - AO353_24755 0.11 +1.1
5,456,277 - AO353_24755 0.14 -1.9
5,456,333 + AO353_24755 0.16 -1.5
5,456,333 + AO353_24755 0.16 -1.0
5,456,334 - AO353_24755 0.16 +0.5
5,456,487 + AO353_24755 0.23 +1.0
5,456,746 - AO353_24755 0.35 +0.7
5,456,843 + AO353_24755 0.39 +0.5
5,456,843 + AO353_24755 0.39 -0.9
5,456,934 + AO353_24755 0.43 +2.1
5,456,934 + AO353_24755 0.43 -0.0
5,456,934 + AO353_24755 0.43 -0.9
5,456,934 + AO353_24755 0.43 +0.1
5,456,934 + AO353_24755 0.43 +0.6
5,456,934 + AO353_24755 0.43 +1.7
5,456,935 - AO353_24755 0.43 -0.5
5,456,935 - AO353_24755 0.43 -0.7
5,456,935 - AO353_24755 0.43 +0.7
5,456,942 + AO353_24755 0.43 +0.0
5,456,945 + AO353_24755 0.43 -0.5
5,456,945 + AO353_24755 0.43 -1.0
5,456,946 - AO353_24755 0.43 -1.0

Or see this region's nucleotide sequence