Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_07180

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_07170 and AO353_07175 are separated by 62 nucleotidesAO353_07175 and AO353_07180 are separated by 87 nucleotidesAO353_07180 and AO353_07185 are separated by 252 nucleotidesAO353_07185 and AO353_07190 are separated by 73 nucleotides AO353_07170: AO353_07170 - hypothetical protein, at 1,575,057 to 1,575,977 _07170 AO353_07175: AO353_07175 - short-chain dehydrogenase, at 1,576,040 to 1,576,828 _07175 AO353_07180: AO353_07180 - zinc-binding protein, at 1,576,916 to 1,577,254 _07180 AO353_07185: AO353_07185 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase, at 1,577,507 to 1,578,154 _07185 AO353_07190: AO353_07190 - S-adenosylmethionine decarboxylase proenzyme, at 1,578,228 to 1,579,022 _07190 Position (kb) 1576 1577 1578Strain fitness (log2 ratio) -2 -1 0 1 2at 1575.958 kb on + strandat 1575.958 kb on + strandat 1575.959 kb on - strandat 1575.959 kb on - strandat 1575.959 kb on - strandat 1575.959 kb on - strandat 1575.963 kb on + strandat 1575.963 kb on + strandat 1575.964 kb on - strandat 1575.964 kb on - strandat 1575.975 kb on + strandat 1575.976 kb on - strandat 1576.162 kb on + strand, within AO353_07175at 1576.162 kb on + strand, within AO353_07175at 1576.162 kb on + strand, within AO353_07175at 1576.163 kb on - strand, within AO353_07175at 1576.163 kb on - strand, within AO353_07175at 1576.163 kb on - strand, within AO353_07175at 1576.163 kb on - strand, within AO353_07175at 1576.312 kb on + strand, within AO353_07175at 1576.372 kb on + strand, within AO353_07175at 1576.373 kb on - strand, within AO353_07175at 1576.373 kb on - strand, within AO353_07175at 1576.469 kb on + strand, within AO353_07175at 1576.470 kb on - strand, within AO353_07175at 1576.470 kb on - strand, within AO353_07175at 1576.493 kb on + strand, within AO353_07175at 1576.493 kb on + strand, within AO353_07175at 1576.493 kb on + strand, within AO353_07175at 1576.493 kb on + strand, within AO353_07175at 1576.493 kb on + strand, within AO353_07175at 1576.493 kb on + strand, within AO353_07175at 1576.493 kb on + strand, within AO353_07175at 1576.493 kb on + strand, within AO353_07175at 1576.493 kb on + strand, within AO353_07175at 1576.493 kb on + strand, within AO353_07175at 1576.493 kb on + strand, within AO353_07175at 1576.493 kb on + strand, within AO353_07175at 1576.493 kb on + strand, within AO353_07175at 1576.493 kb on + strand, within AO353_07175at 1576.493 kb on + strand, within AO353_07175at 1576.493 kb on + strand, within AO353_07175at 1576.493 kb on + strand, within AO353_07175at 1576.493 kb on + strand, within AO353_07175at 1576.493 kb on + strand, within AO353_07175at 1576.493 kb on + strand, within AO353_07175at 1576.494 kb on - strand, within AO353_07175at 1576.494 kb on - strand, within AO353_07175at 1576.494 kb on - strand, within AO353_07175at 1576.494 kb on - strand, within AO353_07175at 1576.494 kb on - strand, within AO353_07175at 1576.494 kb on - strand, within AO353_07175at 1576.494 kb on - strand, within AO353_07175at 1576.494 kb on - strand, within AO353_07175at 1576.494 kb on - strand, within AO353_07175at 1576.494 kb on - strand, within AO353_07175at 1576.494 kb on - strand, within AO353_07175at 1576.494 kb on - strand, within AO353_07175at 1576.494 kb on - strand, within AO353_07175at 1576.494 kb on - strand, within AO353_07175at 1576.497 kb on - strand, within AO353_07175at 1576.497 kb on - strand, within AO353_07175at 1576.497 kb on - strand, within AO353_07175at 1576.511 kb on + strand, within AO353_07175at 1576.511 kb on + strand, within AO353_07175at 1576.511 kb on + strand, within AO353_07175at 1576.511 kb on + strand, within AO353_07175at 1576.511 kb on + strand, within AO353_07175at 1576.511 kb on + strand, within AO353_07175at 1576.511 kb on + strand, within AO353_07175at 1576.511 kb on + strand, within AO353_07175at 1576.511 kb on + strand, within AO353_07175at 1576.511 kb on + strand, within AO353_07175at 1576.511 kb on + strand, within AO353_07175at 1576.511 kb on + strand, within AO353_07175at 1576.512 kb on - strand, within AO353_07175at 1576.512 kb on - strand, within AO353_07175at 1576.512 kb on - strand, within AO353_07175at 1576.512 kb on - strand, within AO353_07175at 1576.512 kb on - strand, within AO353_07175at 1576.512 kb on - strand, within AO353_07175at 1576.512 kb on - strand, within AO353_07175at 1576.512 kb on - strand, within AO353_07175at 1576.512 kb on - strand, within AO353_07175at 1576.512 kb on - strand, within AO353_07175at 1576.512 kb on - strand, within AO353_07175at 1576.512 kb on - strand, within AO353_07175at 1576.512 kb on - strand, within AO353_07175at 1576.512 kb on - strand, within AO353_07175at 1576.515 kb on + strand, within AO353_07175at 1576.515 kb on + strand, within AO353_07175at 1576.515 kb on + strand, within AO353_07175at 1576.515 kb on + strand, within AO353_07175at 1576.515 kb on + strand, within AO353_07175at 1576.515 kb on + strand, within AO353_07175at 1576.515 kb on + strand, within AO353_07175at 1576.515 kb on + strand, within AO353_07175at 1576.515 kb on + strand, within AO353_07175at 1576.515 kb on + strand, within AO353_07175at 1576.515 kb on + strand, within AO353_07175at 1576.515 kb on + strand, within AO353_07175at 1576.515 kb on + strand, within AO353_07175at 1576.515 kb on + strand, within AO353_07175at 1576.515 kb on + strand, within AO353_07175at 1576.516 kb on - strand, within AO353_07175at 1576.516 kb on - strand, within AO353_07175at 1576.516 kb on - strand, within AO353_07175at 1576.516 kb on - strand, within AO353_07175at 1576.516 kb on - strand, within AO353_07175at 1576.516 kb on - strand, within AO353_07175at 1576.516 kb on - strand, within AO353_07175at 1576.516 kb on - strand, within AO353_07175at 1576.516 kb on - strand, within AO353_07175at 1576.682 kb on + strand, within AO353_07175at 1576.682 kb on + strand, within AO353_07175at 1576.682 kb on + strand, within AO353_07175at 1576.683 kb on - strand, within AO353_07175at 1576.683 kb on - strand, within AO353_07175at 1576.683 kb on - strand, within AO353_07175at 1576.683 kb on - strand, within AO353_07175at 1576.794 kb on + strandat 1576.795 kb on - strandat 1576.795 kb on - strandat 1576.795 kb on - strandat 1576.795 kb on - strandat 1576.836 kb on + strandat 1576.836 kb on + strandat 1576.836 kb on + strandat 1576.837 kb on - strandat 1576.837 kb on - strandat 1576.842 kb on + strandat 1576.842 kb on + strandat 1576.842 kb on + strandat 1576.843 kb on - strandat 1576.848 kb on + strandat 1576.848 kb on + strandat 1576.848 kb on + strandat 1576.848 kb on + strandat 1576.848 kb on + strandat 1576.848 kb on + strandat 1576.849 kb on - strandat 1576.849 kb on - strandat 1576.879 kb on + strandat 1576.879 kb on + strandat 1576.879 kb on + strandat 1576.879 kb on + strandat 1576.879 kb on + strandat 1576.879 kb on + strandat 1576.879 kb on + strandat 1576.879 kb on + strandat 1576.880 kb on - strandat 1576.880 kb on - strandat 1576.921 kb on + strandat 1576.922 kb on - strandat 1576.922 kb on - strandat 1576.953 kb on + strand, within AO353_07180at 1576.954 kb on - strand, within AO353_07180at 1576.970 kb on + strand, within AO353_07180at 1576.970 kb on + strand, within AO353_07180at 1576.970 kb on + strand, within AO353_07180at 1576.970 kb on + strand, within AO353_07180at 1577.083 kb on + strand, within AO353_07180at 1577.198 kb on + strand, within AO353_07180at 1577.199 kb on - strand, within AO353_07180at 1577.209 kb on + strand, within AO353_07180at 1577.209 kb on + strand, within AO353_07180at 1577.209 kb on + strand, within AO353_07180at 1577.209 kb on + strand, within AO353_07180at 1577.209 kb on + strand, within AO353_07180at 1577.209 kb on + strand, within AO353_07180at 1577.209 kb on + strand, within AO353_07180at 1577.209 kb on + strand, within AO353_07180at 1577.209 kb on + strand, within AO353_07180at 1577.209 kb on + strand, within AO353_07180at 1577.209 kb on + strand, within AO353_07180at 1577.209 kb on + strand, within AO353_07180at 1577.210 kb on - strand, within AO353_07180at 1577.210 kb on - strand, within AO353_07180at 1577.210 kb on - strand, within AO353_07180at 1577.210 kb on - strand, within AO353_07180at 1577.210 kb on - strand, within AO353_07180at 1577.210 kb on - strand, within AO353_07180at 1577.210 kb on - strand, within AO353_07180at 1577.210 kb on - strand, within AO353_07180at 1577.210 kb on - strand, within AO353_07180at 1577.210 kb on - strand, within AO353_07180at 1577.210 kb on - strand, within AO353_07180at 1577.210 kb on - strand, within AO353_07180at 1577.210 kb on - strand, within AO353_07180at 1577.357 kb on - strandat 1577.357 kb on - strandat 1577.357 kb on - strandat 1577.357 kb on - strandat 1577.357 kb on - strandat 1577.357 kb on - strandat 1577.399 kb on + strandat 1577.399 kb on + strandat 1577.408 kb on + strandat 1577.408 kb on + strandat 1577.409 kb on - strandat 1577.454 kb on + strandat 1577.454 kb on + strandat 1578.159 kb on + strandat 1578.159 kb on + strandat 1578.160 kb on - strandat 1578.160 kb on - strandat 1578.187 kb on + strandat 1578.188 kb on - strandat 1578.188 kb on - strandat 1578.217 kb on + strandat 1578.218 kb on - strandat 1578.218 kb on - strandat 1578.218 kb on - strandat 1578.250 kb on + strandat 1578.251 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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1,575,958 + +0.0
1,575,958 + -0.5
1,575,959 - +0.1
1,575,959 - +1.1
1,575,959 - -0.1
1,575,959 - -0.0
1,575,963 + +0.5
1,575,963 + +0.8
1,575,964 - -0.1
1,575,964 - -0.0
1,575,975 + -0.6
1,575,976 - +0.7
1,576,162 + AO353_07175 0.15 -0.3
1,576,162 + AO353_07175 0.15 +0.1
1,576,162 + AO353_07175 0.15 +1.4
1,576,163 - AO353_07175 0.16 +1.8
1,576,163 - AO353_07175 0.16 +0.5
1,576,163 - AO353_07175 0.16 +1.7
1,576,163 - AO353_07175 0.16 -1.3
1,576,312 + AO353_07175 0.34 -0.3
1,576,372 + AO353_07175 0.42 +0.5
1,576,373 - AO353_07175 0.42 -0.2
1,576,373 - AO353_07175 0.42 -1.9
1,576,469 + AO353_07175 0.54 -0.5
1,576,470 - AO353_07175 0.54 +1.6
1,576,470 - AO353_07175 0.54 +0.8
1,576,493 + AO353_07175 0.57 -0.1
1,576,493 + AO353_07175 0.57 +0.6
1,576,493 + AO353_07175 0.57 +1.2
1,576,493 + AO353_07175 0.57 -1.3
1,576,493 + AO353_07175 0.57 +0.2
1,576,493 + AO353_07175 0.57 -0.6
1,576,493 + AO353_07175 0.57 +1.2
1,576,493 + AO353_07175 0.57 +0.4
1,576,493 + AO353_07175 0.57 -1.1
1,576,493 + AO353_07175 0.57 +0.0
1,576,493 + AO353_07175 0.57 +0.7
1,576,493 + AO353_07175 0.57 -1.5
1,576,493 + AO353_07175 0.57 +0.2
1,576,493 + AO353_07175 0.57 -0.3
1,576,493 + AO353_07175 0.57 +0.3
1,576,493 + AO353_07175 0.57 +0.4
1,576,493 + AO353_07175 0.57 -0.8
1,576,493 + AO353_07175 0.57 -0.8
1,576,493 + AO353_07175 0.57 +0.8
1,576,493 + AO353_07175 0.57 +0.2
1,576,494 - AO353_07175 0.58 +0.6
1,576,494 - AO353_07175 0.58 -0.6
1,576,494 - AO353_07175 0.58 +0.4
1,576,494 - AO353_07175 0.58 -0.1
1,576,494 - AO353_07175 0.58 +1.1
1,576,494 - AO353_07175 0.58 +0.4
1,576,494 - AO353_07175 0.58 -0.6
1,576,494 - AO353_07175 0.58 -0.1
1,576,494 - AO353_07175 0.58 +1.2
1,576,494 - AO353_07175 0.58 -0.3
1,576,494 - AO353_07175 0.58 +2.2
1,576,494 - AO353_07175 0.58 +0.8
1,576,494 - AO353_07175 0.58 +1.2
1,576,494 - AO353_07175 0.58 -0.0
1,576,497 - AO353_07175 0.58 +0.0
1,576,497 - AO353_07175 0.58 -0.6
1,576,497 - AO353_07175 0.58 +2.1
1,576,511 + AO353_07175 0.60 -1.9
1,576,511 + AO353_07175 0.60 +0.1
1,576,511 + AO353_07175 0.60 -0.3
1,576,511 + AO353_07175 0.60 +0.6
1,576,511 + AO353_07175 0.60 -0.2
1,576,511 + AO353_07175 0.60 -0.3
1,576,511 + AO353_07175 0.60 -0.4
1,576,511 + AO353_07175 0.60 -0.7
1,576,511 + AO353_07175 0.60 -0.2
1,576,511 + AO353_07175 0.60 +1.1
1,576,511 + AO353_07175 0.60 +0.2
1,576,511 + AO353_07175 0.60 -1.1
1,576,512 - AO353_07175 0.60 +0.0
1,576,512 - AO353_07175 0.60 -0.3
1,576,512 - AO353_07175 0.60 +0.2
1,576,512 - AO353_07175 0.60 -1.3
1,576,512 - AO353_07175 0.60 -1.0
1,576,512 - AO353_07175 0.60 +0.8
1,576,512 - AO353_07175 0.60 +0.0
1,576,512 - AO353_07175 0.60 +0.2
1,576,512 - AO353_07175 0.60 -0.1
1,576,512 - AO353_07175 0.60 +0.2
1,576,512 - AO353_07175 0.60 +0.5
1,576,512 - AO353_07175 0.60 +0.0
1,576,512 - AO353_07175 0.60 -0.6
1,576,512 - AO353_07175 0.60 -0.7
1,576,515 + AO353_07175 0.60 -0.0
1,576,515 + AO353_07175 0.60 +1.6
1,576,515 + AO353_07175 0.60 -0.3
1,576,515 + AO353_07175 0.60 -0.6
1,576,515 + AO353_07175 0.60 +1.0
1,576,515 + AO353_07175 0.60 +0.4
1,576,515 + AO353_07175 0.60 -0.2
1,576,515 + AO353_07175 0.60 +0.7
1,576,515 + AO353_07175 0.60 -0.3
1,576,515 + AO353_07175 0.60 -2.4
1,576,515 + AO353_07175 0.60 -0.5
1,576,515 + AO353_07175 0.60 -1.1
1,576,515 + AO353_07175 0.60 +0.0
1,576,515 + AO353_07175 0.60 +0.6
1,576,515 + AO353_07175 0.60 -0.5
1,576,516 - AO353_07175 0.60 -0.3
1,576,516 - AO353_07175 0.60 -0.5
1,576,516 - AO353_07175 0.60 +1.0
1,576,516 - AO353_07175 0.60 -0.2
1,576,516 - AO353_07175 0.60 -1.3
1,576,516 - AO353_07175 0.60 -1.0
1,576,516 - AO353_07175 0.60 -0.2
1,576,516 - AO353_07175 0.60 -0.6
1,576,516 - AO353_07175 0.60 +0.2
1,576,682 + AO353_07175 0.81 +0.8
1,576,682 + AO353_07175 0.81 -0.2
1,576,682 + AO353_07175 0.81 -1.0
1,576,683 - AO353_07175 0.81 +1.5
1,576,683 - AO353_07175 0.81 -1.3
1,576,683 - AO353_07175 0.81 +0.3
1,576,683 - AO353_07175 0.81 -0.4
1,576,794 + +0.2
1,576,795 - -0.5
1,576,795 - +1.7
1,576,795 - -0.1
1,576,795 - +0.7
1,576,836 + +0.6
1,576,836 + +1.6
1,576,836 + +0.0
1,576,837 - -0.2
1,576,837 - -1.3
1,576,842 + -1.0
1,576,842 + +1.1
1,576,842 + +2.0
1,576,843 - +0.1
1,576,848 + +1.2
1,576,848 + -0.8
1,576,848 + -1.2
1,576,848 + +0.7
1,576,848 + +0.7
1,576,848 + +1.1
1,576,849 - -0.5
1,576,849 - -0.3
1,576,879 + -0.0
1,576,879 + -0.6
1,576,879 + +1.0
1,576,879 + -1.2
1,576,879 + -0.5
1,576,879 + -0.2
1,576,879 + +0.2
1,576,879 + -1.6
1,576,880 - -1.4
1,576,880 - +0.0
1,576,921 + +0.4
1,576,922 - -1.9
1,576,922 - -2.0
1,576,953 + AO353_07180 0.11 +0.5
1,576,954 - AO353_07180 0.11 -0.3
1,576,970 + AO353_07180 0.16 -1.6
1,576,970 + AO353_07180 0.16 -1.8
1,576,970 + AO353_07180 0.16 -0.2
1,576,970 + AO353_07180 0.16 -0.7
1,577,083 + AO353_07180 0.49 -1.0
1,577,198 + AO353_07180 0.83 +0.7
1,577,199 - AO353_07180 0.83 -0.3
1,577,209 + AO353_07180 0.86 +0.7
1,577,209 + AO353_07180 0.86 -1.3
1,577,209 + AO353_07180 0.86 -0.4
1,577,209 + AO353_07180 0.86 -1.6
1,577,209 + AO353_07180 0.86 -1.0
1,577,209 + AO353_07180 0.86 -1.0
1,577,209 + AO353_07180 0.86 -1.5
1,577,209 + AO353_07180 0.86 -2.5
1,577,209 + AO353_07180 0.86 -0.5
1,577,209 + AO353_07180 0.86 -1.5
1,577,209 + AO353_07180 0.86 -1.1
1,577,209 + AO353_07180 0.86 -0.9
1,577,210 - AO353_07180 0.87 -0.2
1,577,210 - AO353_07180 0.87 -0.2
1,577,210 - AO353_07180 0.87 -1.6
1,577,210 - AO353_07180 0.87 +0.0
1,577,210 - AO353_07180 0.87 -0.3
1,577,210 - AO353_07180 0.87 -1.4
1,577,210 - AO353_07180 0.87 -1.2
1,577,210 - AO353_07180 0.87 -0.4
1,577,210 - AO353_07180 0.87 -2.2
1,577,210 - AO353_07180 0.87 -2.0
1,577,210 - AO353_07180 0.87 -1.7
1,577,210 - AO353_07180 0.87 +0.7
1,577,210 - AO353_07180 0.87 -0.5
1,577,357 - +0.2
1,577,357 - +1.2
1,577,357 - +0.8
1,577,357 - +0.6
1,577,357 - +0.1
1,577,357 - +0.6
1,577,399 + +1.5
1,577,399 + -1.5
1,577,408 + +0.2
1,577,408 + -0.3
1,577,409 - +1.0
1,577,454 + -0.5
1,577,454 + +0.3
1,578,159 + +1.5
1,578,159 + +0.2
1,578,160 - -1.7
1,578,160 - -1.0
1,578,187 + +1.3
1,578,188 - -0.4
1,578,188 - -0.7
1,578,217 + -0.5
1,578,218 - -1.8
1,578,218 - -1.3
1,578,218 - -1.0
1,578,250 + -0.2
1,578,251 - +0.4

Or see this region's nucleotide sequence