Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02135

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02125 and AO353_02130 overlap by 8 nucleotidesAO353_02130 and AO353_02135 are separated by 3 nucleotidesAO353_02135 and AO353_02140 are separated by 270 nucleotidesAO353_02140 and AO353_02145 are separated by 13 nucleotides AO353_02125: AO353_02125 - ABC transporter ATP-binding protein, at 456,219 to 458,036 _02125 AO353_02130: AO353_02130 - disulfide bond formation protein DsbA, at 458,029 to 458,664 _02130 AO353_02135: AO353_02135 - hypothetical protein, at 458,668 to 459,609 _02135 AO353_02140: AO353_02140 - BolA family transcriptional regulator, at 459,880 to 460,179 _02140 AO353_02145: AO353_02145 - hypothetical protein, at 460,193 to 460,717 _02145 Position (kb) 458 459 460Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 457.777 kb on + strand, within AO353_02125at 457.778 kb on - strand, within AO353_02125at 457.881 kb on + strandat 457.881 kb on + strandat 457.881 kb on + strandat 457.881 kb on + strandat 457.882 kb on - strandat 457.915 kb on - strandat 457.915 kb on - strandat 458.032 kb on + strandat 458.032 kb on + strandat 458.032 kb on + strandat 458.032 kb on + strandat 458.032 kb on + strandat 458.032 kb on + strandat 458.033 kb on - strandat 458.033 kb on - strandat 458.033 kb on - strandat 458.309 kb on + strand, within AO353_02130at 458.310 kb on - strand, within AO353_02130at 458.310 kb on - strand, within AO353_02130at 458.310 kb on - strand, within AO353_02130at 458.310 kb on - strand, within AO353_02130at 458.310 kb on - strand, within AO353_02130at 458.310 kb on - strand, within AO353_02130at 458.406 kb on - strand, within AO353_02130at 458.406 kb on - strand, within AO353_02130at 458.489 kb on + strand, within AO353_02130at 458.489 kb on + strand, within AO353_02130at 458.489 kb on + strand, within AO353_02130at 458.489 kb on + strand, within AO353_02130at 458.489 kb on + strand, within AO353_02130at 458.490 kb on - strand, within AO353_02130at 458.490 kb on - strand, within AO353_02130at 458.641 kb on + strandat 458.641 kb on + strandat 458.641 kb on + strandat 458.641 kb on + strandat 458.641 kb on + strandat 458.641 kb on + strandat 458.641 kb on + strandat 458.642 kb on - strandat 458.642 kb on - strandat 458.642 kb on - strandat 458.645 kb on + strandat 458.645 kb on + strandat 458.645 kb on + strandat 458.645 kb on + strandat 458.645 kb on + strandat 458.645 kb on + strandat 458.646 kb on - strandat 458.646 kb on - strandat 458.646 kb on - strandat 458.646 kb on - strandat 458.646 kb on - strandat 458.646 kb on - strandat 458.646 kb on - strandat 458.646 kb on - strandat 458.646 kb on - strandat 458.646 kb on - strandat 458.646 kb on - strandat 458.646 kb on - strandat 458.693 kb on + strandat 458.693 kb on + strandat 458.693 kb on + strandat 458.693 kb on + strandat 458.693 kb on + strandat 458.693 kb on + strandat 458.693 kb on + strandat 458.693 kb on + strandat 458.693 kb on + strandat 458.693 kb on + strandat 458.693 kb on + strandat 458.693 kb on + strandat 458.694 kb on - strandat 458.694 kb on - strandat 458.694 kb on - strandat 458.694 kb on - strandat 458.694 kb on - strandat 458.699 kb on + strandat 458.700 kb on - strandat 458.790 kb on + strand, within AO353_02135at 458.791 kb on - strand, within AO353_02135at 458.825 kb on + strand, within AO353_02135at 458.825 kb on + strand, within AO353_02135at 458.825 kb on + strand, within AO353_02135at 458.825 kb on + strand, within AO353_02135at 458.825 kb on + strand, within AO353_02135at 458.825 kb on + strand, within AO353_02135at 458.825 kb on + strand, within AO353_02135at 458.825 kb on + strand, within AO353_02135at 458.825 kb on + strand, within AO353_02135at 458.825 kb on + strand, within AO353_02135at 458.825 kb on + strand, within AO353_02135at 458.825 kb on + strand, within AO353_02135at 458.826 kb on - strand, within AO353_02135at 458.826 kb on - strand, within AO353_02135at 458.826 kb on - strand, within AO353_02135at 458.826 kb on - strand, within AO353_02135at 458.886 kb on - strand, within AO353_02135at 458.886 kb on - strand, within AO353_02135at 458.984 kb on + strand, within AO353_02135at 458.984 kb on + strand, within AO353_02135at 458.984 kb on + strand, within AO353_02135at 458.985 kb on - strand, within AO353_02135at 458.985 kb on - strand, within AO353_02135at 459.041 kb on + strand, within AO353_02135at 459.041 kb on + strand, within AO353_02135at 459.041 kb on + strand, within AO353_02135at 459.041 kb on + strand, within AO353_02135at 459.042 kb on - strand, within AO353_02135at 459.042 kb on - strand, within AO353_02135at 459.128 kb on + strand, within AO353_02135at 459.201 kb on - strand, within AO353_02135at 459.201 kb on - strand, within AO353_02135at 459.201 kb on - strand, within AO353_02135at 459.272 kb on + strand, within AO353_02135at 459.272 kb on + strand, within AO353_02135at 459.272 kb on + strand, within AO353_02135at 459.272 kb on + strand, within AO353_02135at 459.272 kb on + strand, within AO353_02135at 459.272 kb on + strand, within AO353_02135at 459.272 kb on + strand, within AO353_02135at 459.272 kb on + strand, within AO353_02135at 459.273 kb on - strand, within AO353_02135at 459.273 kb on - strand, within AO353_02135at 459.273 kb on - strand, within AO353_02135at 459.273 kb on - strand, within AO353_02135at 459.273 kb on - strand, within AO353_02135at 459.273 kb on - strand, within AO353_02135at 459.273 kb on - strand, within AO353_02135at 459.273 kb on - strand, within AO353_02135at 459.273 kb on - strand, within AO353_02135at 459.273 kb on - strand, within AO353_02135at 459.273 kb on - strand, within AO353_02135at 459.273 kb on - strand, within AO353_02135at 459.374 kb on + strand, within AO353_02135at 459.374 kb on + strand, within AO353_02135at 459.374 kb on + strand, within AO353_02135at 459.554 kb on + strandat 459.554 kb on + strandat 459.554 kb on + strandat 459.555 kb on - strandat 459.576 kb on + strandat 459.576 kb on + strandat 459.576 kb on + strandat 459.576 kb on + strandat 459.576 kb on + strandat 459.576 kb on + strandat 459.576 kb on + strandat 459.577 kb on - strandat 459.577 kb on - strandat 459.577 kb on - strandat 459.577 kb on - strandat 459.577 kb on - strandat 459.577 kb on - strandat 459.577 kb on - strandat 459.577 kb on - strandat 459.577 kb on - strandat 459.577 kb on - strandat 459.577 kb on - strandat 459.577 kb on - strandat 459.577 kb on - strandat 459.578 kb on + strandat 459.578 kb on + strandat 459.578 kb on + strandat 459.578 kb on + strandat 459.578 kb on + strandat 459.578 kb on + strandat 459.578 kb on + strandat 459.578 kb on + strandat 459.578 kb on + strandat 459.578 kb on + strandat 459.578 kb on + strandat 459.578 kb on + strandat 459.578 kb on + strandat 459.578 kb on + strandat 459.579 kb on - strandat 459.579 kb on - strandat 459.579 kb on - strandat 459.579 kb on - strandat 459.715 kb on + strandat 459.778 kb on - strandat 459.821 kb on - strandat 459.824 kb on - strandat 459.824 kb on - strandat 459.824 kb on - strandat 459.951 kb on + strand, within AO353_02140at 459.951 kb on + strand, within AO353_02140at 459.951 kb on + strand, within AO353_02140at 459.952 kb on - strand, within AO353_02140at 459.952 kb on - strand, within AO353_02140at 459.952 kb on - strand, within AO353_02140at 459.953 kb on + strand, within AO353_02140at 459.953 kb on + strand, within AO353_02140at 459.953 kb on + strand, within AO353_02140at 459.953 kb on + strand, within AO353_02140at 459.953 kb on + strand, within AO353_02140at 459.953 kb on + strand, within AO353_02140at 459.953 kb on + strand, within AO353_02140at 459.953 kb on + strand, within AO353_02140at 459.953 kb on + strand, within AO353_02140at 459.953 kb on + strand, within AO353_02140at 459.953 kb on + strand, within AO353_02140at 459.953 kb on + strand, within AO353_02140at 459.954 kb on - strand, within AO353_02140at 459.954 kb on - strand, within AO353_02140at 459.954 kb on - strand, within AO353_02140at 459.954 kb on - strand, within AO353_02140at 459.954 kb on - strand, within AO353_02140at 459.954 kb on - strand, within AO353_02140at 459.954 kb on - strand, within AO353_02140at 459.954 kb on - strand, within AO353_02140at 459.954 kb on - strand, within AO353_02140at 459.954 kb on - strand, within AO353_02140at 459.954 kb on - strand, within AO353_02140at 459.954 kb on - strand, within AO353_02140at 459.954 kb on - strand, within AO353_02140at 459.954 kb on - strand, within AO353_02140at 459.957 kb on + strand, within AO353_02140at 459.957 kb on + strand, within AO353_02140at 459.957 kb on + strand, within AO353_02140at 459.957 kb on + strand, within AO353_02140at 459.957 kb on + strand, within AO353_02140at 459.957 kb on + strand, within AO353_02140at 459.957 kb on + strand, within AO353_02140at 459.958 kb on - strand, within AO353_02140at 459.958 kb on - strand, within AO353_02140at 459.958 kb on - strand, within AO353_02140at 459.958 kb on - strand, within AO353_02140at 459.958 kb on - strand, within AO353_02140at 459.958 kb on - strand, within AO353_02140at 459.958 kb on - strand, within AO353_02140at 460.008 kb on - strand, within AO353_02140at 460.101 kb on + strand, within AO353_02140at 460.101 kb on + strand, within AO353_02140at 460.101 kb on + strand, within AO353_02140at 460.101 kb on + strand, within AO353_02140at 460.101 kb on + strand, within AO353_02140at 460.102 kb on - strand, within AO353_02140at 460.102 kb on - strand, within AO353_02140at 460.102 kb on - strand, within AO353_02140at 460.102 kb on - strand, within AO353_02140at 460.102 kb on - strand, within AO353_02140at 460.102 kb on - strand, within AO353_02140at 460.102 kb on - strand, within AO353_02140at 460.102 kb on - strand, within AO353_02140at 460.161 kb on + strandat 460.161 kb on + strandat 460.161 kb on + strandat 460.371 kb on + strand, within AO353_02145at 460.372 kb on - strand, within AO353_02145at 460.372 kb on - strand, within AO353_02145at 460.419 kb on + strand, within AO353_02145at 460.419 kb on + strand, within AO353_02145at 460.419 kb on + strand, within AO353_02145at 460.420 kb on - strand, within AO353_02145at 460.420 kb on - strand, within AO353_02145at 460.420 kb on - strand, within AO353_02145at 460.420 kb on - strand, within AO353_02145at 460.494 kb on + strand, within AO353_02145at 460.494 kb on + strand, within AO353_02145at 460.495 kb on - strand, within AO353_02145at 460.575 kb on + strand, within AO353_02145at 460.575 kb on + strand, within AO353_02145at 460.575 kb on + strand, within AO353_02145at 460.575 kb on + strand, within AO353_02145at 460.575 kb on + strand, within AO353_02145at 460.575 kb on + strand, within AO353_02145at 460.575 kb on + strand, within AO353_02145at 460.575 kb on + strand, within AO353_02145at 460.576 kb on - strand, within AO353_02145at 460.576 kb on - strand, within AO353_02145

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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457,777 + AO353_02125 0.86 +0.1
457,778 - AO353_02125 0.86 -0.7
457,881 + +0.9
457,881 + -1.2
457,881 + -1.6
457,881 + -0.8
457,882 - +1.2
457,915 - +0.7
457,915 - -0.9
458,032 + -0.9
458,032 + -1.5
458,032 + -1.6
458,032 + -0.2
458,032 + -0.4
458,032 + -1.2
458,033 - -0.6
458,033 - -1.4
458,033 - -0.2
458,309 + AO353_02130 0.44 -0.8
458,310 - AO353_02130 0.44 -1.4
458,310 - AO353_02130 0.44 -1.0
458,310 - AO353_02130 0.44 -0.6
458,310 - AO353_02130 0.44 +0.6
458,310 - AO353_02130 0.44 +0.3
458,310 - AO353_02130 0.44 +1.5
458,406 - AO353_02130 0.59 +0.2
458,406 - AO353_02130 0.59 +0.7
458,489 + AO353_02130 0.72 +1.7
458,489 + AO353_02130 0.72 +0.7
458,489 + AO353_02130 0.72 +0.6
458,489 + AO353_02130 0.72 +0.5
458,489 + AO353_02130 0.72 -1.1
458,490 - AO353_02130 0.72 -0.2
458,490 - AO353_02130 0.72 -0.4
458,641 + +1.7
458,641 + -0.5
458,641 + -0.4
458,641 + +0.8
458,641 + -0.7
458,641 + +2.4
458,641 + +0.5
458,642 - +1.1
458,642 - -0.8
458,642 - -0.9
458,645 + -1.7
458,645 + +1.5
458,645 + -0.4
458,645 + -1.1
458,645 + -0.4
458,645 + +1.2
458,646 - -1.9
458,646 - +0.0
458,646 - +0.5
458,646 - -0.2
458,646 - +0.5
458,646 - +1.1
458,646 - +0.8
458,646 - -2.0
458,646 - +0.5
458,646 - +0.8
458,646 - +0.9
458,646 - +1.0
458,693 + -1.0
458,693 + +0.4
458,693 + -1.2
458,693 + -1.1
458,693 + +0.4
458,693 + -1.4
458,693 + -0.0
458,693 + +0.5
458,693 + -1.5
458,693 + +0.3
458,693 + -1.1
458,693 + +0.9
458,694 - -0.6
458,694 - -1.8
458,694 - -0.9
458,694 - +0.6
458,694 - +1.0
458,699 + +0.9
458,700 - +1.9
458,790 + AO353_02135 0.13 -0.5
458,791 - AO353_02135 0.13 -2.4
458,825 + AO353_02135 0.17 +1.0
458,825 + AO353_02135 0.17 -1.4
458,825 + AO353_02135 0.17 -0.7
458,825 + AO353_02135 0.17 -1.7
458,825 + AO353_02135 0.17 +1.0
458,825 + AO353_02135 0.17 +0.9
458,825 + AO353_02135 0.17 -2.3
458,825 + AO353_02135 0.17 -0.2
458,825 + AO353_02135 0.17 -0.8
458,825 + AO353_02135 0.17 +0.5
458,825 + AO353_02135 0.17 -1.4
458,825 + AO353_02135 0.17 -0.6
458,826 - AO353_02135 0.17 -2.6
458,826 - AO353_02135 0.17 -1.3
458,826 - AO353_02135 0.17 -1.5
458,826 - AO353_02135 0.17 -1.9
458,886 - AO353_02135 0.23 +0.9
458,886 - AO353_02135 0.23 -0.2
458,984 + AO353_02135 0.34 -0.6
458,984 + AO353_02135 0.34 -0.6
458,984 + AO353_02135 0.34 +1.1
458,985 - AO353_02135 0.34 -1.4
458,985 - AO353_02135 0.34 -1.9
459,041 + AO353_02135 0.40 +0.1
459,041 + AO353_02135 0.40 -1.4
459,041 + AO353_02135 0.40 +0.4
459,041 + AO353_02135 0.40 -1.1
459,042 - AO353_02135 0.40 -2.3
459,042 - AO353_02135 0.40 +1.0
459,128 + AO353_02135 0.49 -1.7
459,201 - AO353_02135 0.57 -0.6
459,201 - AO353_02135 0.57 -2.0
459,201 - AO353_02135 0.57 -2.3
459,272 + AO353_02135 0.64 +0.3
459,272 + AO353_02135 0.64 -3.2
459,272 + AO353_02135 0.64 -0.7
459,272 + AO353_02135 0.64 -0.1
459,272 + AO353_02135 0.64 +0.2
459,272 + AO353_02135 0.64 -1.3
459,272 + AO353_02135 0.64 -2.3
459,272 + AO353_02135 0.64 +0.8
459,273 - AO353_02135 0.64 -1.7
459,273 - AO353_02135 0.64 -1.2
459,273 - AO353_02135 0.64 -1.4
459,273 - AO353_02135 0.64 -1.2
459,273 - AO353_02135 0.64 -0.1
459,273 - AO353_02135 0.64 -2.0
459,273 - AO353_02135 0.64 -1.5
459,273 - AO353_02135 0.64 +0.8
459,273 - AO353_02135 0.64 +0.4
459,273 - AO353_02135 0.64 +1.2
459,273 - AO353_02135 0.64 +0.3
459,273 - AO353_02135 0.64 +0.1
459,374 + AO353_02135 0.75 +0.1
459,374 + AO353_02135 0.75 +0.8
459,374 + AO353_02135 0.75 +3.3
459,554 + -0.1
459,554 + +0.6
459,554 + -0.1
459,555 - -1.2
459,576 + -0.3
459,576 + -0.6
459,576 + +0.8
459,576 + -0.3
459,576 + +2.8
459,576 + +0.1
459,576 + -1.6
459,577 - -0.8
459,577 - +4.6
459,577 - -1.3
459,577 - +0.1
459,577 - +0.1
459,577 - +1.4
459,577 - +1.0
459,577 - +0.6
459,577 - -1.5
459,577 - -0.3
459,577 - -1.1
459,577 - +0.2
459,577 - -1.1
459,578 + -0.3
459,578 + +0.4
459,578 + -0.3
459,578 + -2.4
459,578 + -0.4
459,578 + -1.0
459,578 + -2.3
459,578 + -0.8
459,578 + +0.7
459,578 + -3.3
459,578 + -1.4
459,578 + -0.2
459,578 + +0.2
459,578 + +0.9
459,579 - +0.6
459,579 - -0.4
459,579 - -0.6
459,579 - -0.9
459,715 + -0.8
459,778 - +1.1
459,821 - -0.4
459,824 - -1.1
459,824 - +0.8
459,824 - -2.0
459,951 + AO353_02140 0.24 -1.3
459,951 + AO353_02140 0.24 -1.9
459,951 + AO353_02140 0.24 -2.3
459,952 - AO353_02140 0.24 +0.2
459,952 - AO353_02140 0.24 -1.0
459,952 - AO353_02140 0.24 -0.2
459,953 + AO353_02140 0.24 +1.5
459,953 + AO353_02140 0.24 +0.0
459,953 + AO353_02140 0.24 -0.1
459,953 + AO353_02140 0.24 -1.3
459,953 + AO353_02140 0.24 -0.8
459,953 + AO353_02140 0.24 -2.3
459,953 + AO353_02140 0.24 -1.8
459,953 + AO353_02140 0.24 -0.9
459,953 + AO353_02140 0.24 +0.8
459,953 + AO353_02140 0.24 +0.8
459,953 + AO353_02140 0.24 -2.4
459,953 + AO353_02140 0.24 +1.7
459,954 - AO353_02140 0.25 -1.1
459,954 - AO353_02140 0.25 +0.3
459,954 - AO353_02140 0.25 -0.7
459,954 - AO353_02140 0.25 +0.6
459,954 - AO353_02140 0.25 -0.3
459,954 - AO353_02140 0.25 -0.0
459,954 - AO353_02140 0.25 -0.6
459,954 - AO353_02140 0.25 +2.8
459,954 - AO353_02140 0.25 -0.3
459,954 - AO353_02140 0.25 -0.2
459,954 - AO353_02140 0.25 +0.1
459,954 - AO353_02140 0.25 -0.5
459,954 - AO353_02140 0.25 -0.4
459,954 - AO353_02140 0.25 -0.3
459,957 + AO353_02140 0.26 -0.3
459,957 + AO353_02140 0.26 +0.9
459,957 + AO353_02140 0.26 -1.0
459,957 + AO353_02140 0.26 +0.3
459,957 + AO353_02140 0.26 +0.1
459,957 + AO353_02140 0.26 -1.8
459,957 + AO353_02140 0.26 -0.8
459,958 - AO353_02140 0.26 -0.8
459,958 - AO353_02140 0.26 -1.1
459,958 - AO353_02140 0.26 +0.5
459,958 - AO353_02140 0.26 -0.9
459,958 - AO353_02140 0.26 +0.6
459,958 - AO353_02140 0.26 -0.6
459,958 - AO353_02140 0.26 -2.9
460,008 - AO353_02140 0.43 -1.6
460,101 + AO353_02140 0.74 -0.6
460,101 + AO353_02140 0.74 +0.6
460,101 + AO353_02140 0.74 -1.4
460,101 + AO353_02140 0.74 +0.2
460,101 + AO353_02140 0.74 -0.4
460,102 - AO353_02140 0.74 +0.3
460,102 - AO353_02140 0.74 +3.0
460,102 - AO353_02140 0.74 -1.4
460,102 - AO353_02140 0.74 -0.6
460,102 - AO353_02140 0.74 -1.5
460,102 - AO353_02140 0.74 -0.3
460,102 - AO353_02140 0.74 +1.4
460,102 - AO353_02140 0.74 +0.8
460,161 + -0.2
460,161 + -1.3
460,161 + +0.5
460,371 + AO353_02145 0.34 -2.3
460,372 - AO353_02145 0.34 -0.6
460,372 - AO353_02145 0.34 +1.7
460,419 + AO353_02145 0.43 +0.3
460,419 + AO353_02145 0.43 -0.9
460,419 + AO353_02145 0.43 +1.2
460,420 - AO353_02145 0.43 +0.7
460,420 - AO353_02145 0.43 +5.1
460,420 - AO353_02145 0.43 +0.8
460,420 - AO353_02145 0.43 -0.1
460,494 + AO353_02145 0.57 +0.3
460,494 + AO353_02145 0.57 -1.2
460,495 - AO353_02145 0.58 +0.3
460,575 + AO353_02145 0.73 -1.7
460,575 + AO353_02145 0.73 -1.5
460,575 + AO353_02145 0.73 +0.0
460,575 + AO353_02145 0.73 +1.2
460,575 + AO353_02145 0.73 -0.2
460,575 + AO353_02145 0.73 +0.1
460,575 + AO353_02145 0.73 +0.2
460,575 + AO353_02145 0.73 -1.5
460,576 - AO353_02145 0.73 +0.6
460,576 - AO353_02145 0.73 -0.7

Or see this region's nucleotide sequence