Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02125 and AO353_02130 overlap by 8 nucleotides AO353_02130 and AO353_02135 are separated by 3 nucleotides AO353_02135 and AO353_02140 are separated by 270 nucleotides AO353_02140 and AO353_02145 are separated by 13 nucleotides
AO353_02125: AO353_02125 - ABC transporter ATP-binding protein, at 456,219 to 458,036
_02125
AO353_02130: AO353_02130 - disulfide bond formation protein DsbA, at 458,029 to 458,664
_02130
AO353_02135: AO353_02135 - hypothetical protein, at 458,668 to 459,609
_02135
AO353_02140: AO353_02140 - BolA family transcriptional regulator, at 459,880 to 460,179
_02140
AO353_02145: AO353_02145 - hypothetical protein, at 460,193 to 460,717
_02145
Position (kb)
458
459
460 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 457.777 kb on + strand, within AO353_02125 at 457.778 kb on - strand, within AO353_02125 at 457.881 kb on + strand at 457.881 kb on + strand at 457.881 kb on + strand at 457.881 kb on + strand at 457.882 kb on - strand at 457.915 kb on - strand at 457.915 kb on - strand at 458.032 kb on + strand at 458.032 kb on + strand at 458.032 kb on + strand at 458.032 kb on + strand at 458.032 kb on + strand at 458.032 kb on + strand at 458.033 kb on - strand at 458.033 kb on - strand at 458.033 kb on - strand at 458.309 kb on + strand, within AO353_02130 at 458.310 kb on - strand, within AO353_02130 at 458.310 kb on - strand, within AO353_02130 at 458.310 kb on - strand, within AO353_02130 at 458.310 kb on - strand, within AO353_02130 at 458.310 kb on - strand, within AO353_02130 at 458.310 kb on - strand, within AO353_02130 at 458.406 kb on - strand, within AO353_02130 at 458.406 kb on - strand, within AO353_02130 at 458.489 kb on + strand, within AO353_02130 at 458.489 kb on + strand, within AO353_02130 at 458.489 kb on + strand, within AO353_02130 at 458.489 kb on + strand, within AO353_02130 at 458.489 kb on + strand, within AO353_02130 at 458.490 kb on - strand, within AO353_02130 at 458.490 kb on - strand, within AO353_02130 at 458.641 kb on + strand at 458.641 kb on + strand at 458.641 kb on + strand at 458.641 kb on + strand at 458.641 kb on + strand at 458.641 kb on + strand at 458.641 kb on + strand at 458.642 kb on - strand at 458.642 kb on - strand at 458.642 kb on - strand at 458.645 kb on + strand at 458.645 kb on + strand at 458.645 kb on + strand at 458.645 kb on + strand at 458.645 kb on + strand at 458.645 kb on + strand at 458.646 kb on - strand at 458.646 kb on - strand at 458.646 kb on - strand at 458.646 kb on - strand at 458.646 kb on - strand at 458.646 kb on - strand at 458.646 kb on - strand at 458.646 kb on - strand at 458.646 kb on - strand at 458.646 kb on - strand at 458.646 kb on - strand at 458.646 kb on - strand at 458.693 kb on + strand at 458.693 kb on + strand at 458.693 kb on + strand at 458.693 kb on + strand at 458.693 kb on + strand at 458.693 kb on + strand at 458.693 kb on + strand at 458.693 kb on + strand at 458.693 kb on + strand at 458.693 kb on + strand at 458.693 kb on + strand at 458.693 kb on + strand at 458.694 kb on - strand at 458.694 kb on - strand at 458.694 kb on - strand at 458.694 kb on - strand at 458.694 kb on - strand at 458.699 kb on + strand at 458.700 kb on - strand at 458.790 kb on + strand, within AO353_02135 at 458.791 kb on - strand, within AO353_02135 at 458.825 kb on + strand, within AO353_02135 at 458.825 kb on + strand, within AO353_02135 at 458.825 kb on + strand, within AO353_02135 at 458.825 kb on + strand, within AO353_02135 at 458.825 kb on + strand, within AO353_02135 at 458.825 kb on + strand, within AO353_02135 at 458.825 kb on + strand, within AO353_02135 at 458.825 kb on + strand, within AO353_02135 at 458.825 kb on + strand, within AO353_02135 at 458.825 kb on + strand, within AO353_02135 at 458.825 kb on + strand, within AO353_02135 at 458.825 kb on + strand, within AO353_02135 at 458.826 kb on - strand, within AO353_02135 at 458.826 kb on - strand, within AO353_02135 at 458.826 kb on - strand, within AO353_02135 at 458.826 kb on - strand, within AO353_02135 at 458.886 kb on - strand, within AO353_02135 at 458.886 kb on - strand, within AO353_02135 at 458.984 kb on + strand, within AO353_02135 at 458.984 kb on + strand, within AO353_02135 at 458.984 kb on + strand, within AO353_02135 at 458.985 kb on - strand, within AO353_02135 at 458.985 kb on - strand, within AO353_02135 at 459.041 kb on + strand, within AO353_02135 at 459.041 kb on + strand, within AO353_02135 at 459.041 kb on + strand, within AO353_02135 at 459.041 kb on + strand, within AO353_02135 at 459.042 kb on - strand, within AO353_02135 at 459.042 kb on - strand, within AO353_02135 at 459.128 kb on + strand, within AO353_02135 at 459.201 kb on - strand, within AO353_02135 at 459.201 kb on - strand, within AO353_02135 at 459.201 kb on - strand, within AO353_02135 at 459.272 kb on + strand, within AO353_02135 at 459.272 kb on + strand, within AO353_02135 at 459.272 kb on + strand, within AO353_02135 at 459.272 kb on + strand, within AO353_02135 at 459.272 kb on + strand, within AO353_02135 at 459.272 kb on + strand, within AO353_02135 at 459.272 kb on + strand, within AO353_02135 at 459.272 kb on + strand, within AO353_02135 at 459.273 kb on - strand, within AO353_02135 at 459.273 kb on - strand, within AO353_02135 at 459.273 kb on - strand, within AO353_02135 at 459.273 kb on - strand, within AO353_02135 at 459.273 kb on - strand, within AO353_02135 at 459.273 kb on - strand, within AO353_02135 at 459.273 kb on - strand, within AO353_02135 at 459.273 kb on - strand, within AO353_02135 at 459.273 kb on - strand, within AO353_02135 at 459.273 kb on - strand, within AO353_02135 at 459.273 kb on - strand, within AO353_02135 at 459.273 kb on - strand, within AO353_02135 at 459.374 kb on + strand, within AO353_02135 at 459.374 kb on + strand, within AO353_02135 at 459.374 kb on + strand, within AO353_02135 at 459.554 kb on + strand at 459.554 kb on + strand at 459.554 kb on + strand at 459.555 kb on - strand at 459.576 kb on + strand at 459.576 kb on + strand at 459.576 kb on + strand at 459.576 kb on + strand at 459.576 kb on + strand at 459.576 kb on + strand at 459.576 kb on + strand at 459.577 kb on - strand at 459.577 kb on - strand at 459.577 kb on - strand at 459.577 kb on - strand at 459.577 kb on - strand at 459.577 kb on - strand at 459.577 kb on - strand at 459.577 kb on - strand at 459.577 kb on - strand at 459.577 kb on - strand at 459.577 kb on - strand at 459.577 kb on - strand at 459.577 kb on - strand at 459.578 kb on + strand at 459.578 kb on + strand at 459.578 kb on + strand at 459.578 kb on + strand at 459.578 kb on + strand at 459.578 kb on + strand at 459.578 kb on + strand at 459.578 kb on + strand at 459.578 kb on + strand at 459.578 kb on + strand at 459.578 kb on + strand at 459.578 kb on + strand at 459.578 kb on + strand at 459.578 kb on + strand at 459.579 kb on - strand at 459.579 kb on - strand at 459.579 kb on - strand at 459.579 kb on - strand at 459.715 kb on + strand at 459.778 kb on - strand at 459.821 kb on - strand at 459.824 kb on - strand at 459.824 kb on - strand at 459.824 kb on - strand at 459.951 kb on + strand, within AO353_02140 at 459.951 kb on + strand, within AO353_02140 at 459.951 kb on + strand, within AO353_02140 at 459.952 kb on - strand, within AO353_02140 at 459.952 kb on - strand, within AO353_02140 at 459.952 kb on - strand, within AO353_02140 at 459.953 kb on + strand, within AO353_02140 at 459.953 kb on + strand, within AO353_02140 at 459.953 kb on + strand, within AO353_02140 at 459.953 kb on + strand, within AO353_02140 at 459.953 kb on + strand, within AO353_02140 at 459.953 kb on + strand, within AO353_02140 at 459.953 kb on + strand, within AO353_02140 at 459.953 kb on + strand, within AO353_02140 at 459.953 kb on + strand, within AO353_02140 at 459.953 kb on + strand, within AO353_02140 at 459.953 kb on + strand, within AO353_02140 at 459.953 kb on + strand, within AO353_02140 at 459.954 kb on - strand, within AO353_02140 at 459.954 kb on - strand, within AO353_02140 at 459.954 kb on - strand, within AO353_02140 at 459.954 kb on - strand, within AO353_02140 at 459.954 kb on - strand, within AO353_02140 at 459.954 kb on - strand, within AO353_02140 at 459.954 kb on - strand, within AO353_02140 at 459.954 kb on - strand, within AO353_02140 at 459.954 kb on - strand, within AO353_02140 at 459.954 kb on - strand, within AO353_02140 at 459.954 kb on - strand, within AO353_02140 at 459.954 kb on - strand, within AO353_02140 at 459.954 kb on - strand, within AO353_02140 at 459.954 kb on - strand, within AO353_02140 at 459.957 kb on + strand, within AO353_02140 at 459.957 kb on + strand, within AO353_02140 at 459.957 kb on + strand, within AO353_02140 at 459.957 kb on + strand, within AO353_02140 at 459.957 kb on + strand, within AO353_02140 at 459.957 kb on + strand, within AO353_02140 at 459.957 kb on + strand, within AO353_02140 at 459.958 kb on - strand, within AO353_02140 at 459.958 kb on - strand, within AO353_02140 at 459.958 kb on - strand, within AO353_02140 at 459.958 kb on - strand, within AO353_02140 at 459.958 kb on - strand, within AO353_02140 at 459.958 kb on - strand, within AO353_02140 at 459.958 kb on - strand, within AO353_02140 at 460.008 kb on - strand, within AO353_02140 at 460.101 kb on + strand, within AO353_02140 at 460.101 kb on + strand, within AO353_02140 at 460.101 kb on + strand, within AO353_02140 at 460.101 kb on + strand, within AO353_02140 at 460.101 kb on + strand, within AO353_02140 at 460.102 kb on - strand, within AO353_02140 at 460.102 kb on - strand, within AO353_02140 at 460.102 kb on - strand, within AO353_02140 at 460.102 kb on - strand, within AO353_02140 at 460.102 kb on - strand, within AO353_02140 at 460.102 kb on - strand, within AO353_02140 at 460.102 kb on - strand, within AO353_02140 at 460.102 kb on - strand, within AO353_02140 at 460.161 kb on + strand at 460.161 kb on + strand at 460.161 kb on + strand at 460.371 kb on + strand, within AO353_02145 at 460.372 kb on - strand, within AO353_02145 at 460.372 kb on - strand, within AO353_02145 at 460.419 kb on + strand, within AO353_02145 at 460.419 kb on + strand, within AO353_02145 at 460.419 kb on + strand, within AO353_02145 at 460.420 kb on - strand, within AO353_02145 at 460.420 kb on - strand, within AO353_02145 at 460.420 kb on - strand, within AO353_02145 at 460.420 kb on - strand, within AO353_02145 at 460.494 kb on + strand, within AO353_02145 at 460.494 kb on + strand, within AO353_02145 at 460.495 kb on - strand, within AO353_02145 at 460.575 kb on + strand, within AO353_02145 at 460.575 kb on + strand, within AO353_02145 at 460.575 kb on + strand, within AO353_02145 at 460.575 kb on + strand, within AO353_02145 at 460.575 kb on + strand, within AO353_02145 at 460.575 kb on + strand, within AO353_02145 at 460.575 kb on + strand, within AO353_02145 at 460.575 kb on + strand, within AO353_02145 at 460.576 kb on - strand, within AO353_02145 at 460.576 kb on - strand, within AO353_02145
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 457,777 + AO353_02125 0.86 +0.1 457,778 - AO353_02125 0.86 -0.7 457,881 + +0.9 457,881 + -1.2 457,881 + -1.6 457,881 + -0.8 457,882 - +1.2 457,915 - +0.7 457,915 - -0.9 458,032 + -0.9 458,032 + -1.5 458,032 + -1.6 458,032 + -0.2 458,032 + -0.4 458,032 + -1.2 458,033 - -0.6 458,033 - -1.4 458,033 - -0.2 458,309 + AO353_02130 0.44 -0.8 458,310 - AO353_02130 0.44 -1.4 458,310 - AO353_02130 0.44 -1.0 458,310 - AO353_02130 0.44 -0.6 458,310 - AO353_02130 0.44 +0.6 458,310 - AO353_02130 0.44 +0.3 458,310 - AO353_02130 0.44 +1.5 458,406 - AO353_02130 0.59 +0.2 458,406 - AO353_02130 0.59 +0.7 458,489 + AO353_02130 0.72 +1.7 458,489 + AO353_02130 0.72 +0.7 458,489 + AO353_02130 0.72 +0.6 458,489 + AO353_02130 0.72 +0.5 458,489 + AO353_02130 0.72 -1.1 458,490 - AO353_02130 0.72 -0.2 458,490 - AO353_02130 0.72 -0.4 458,641 + +1.7 458,641 + -0.5 458,641 + -0.4 458,641 + +0.8 458,641 + -0.7 458,641 + +2.4 458,641 + +0.5 458,642 - +1.1 458,642 - -0.8 458,642 - -0.9 458,645 + -1.7 458,645 + +1.5 458,645 + -0.4 458,645 + -1.1 458,645 + -0.4 458,645 + +1.2 458,646 - -1.9 458,646 - +0.0 458,646 - +0.5 458,646 - -0.2 458,646 - +0.5 458,646 - +1.1 458,646 - +0.8 458,646 - -2.0 458,646 - +0.5 458,646 - +0.8 458,646 - +0.9 458,646 - +1.0 458,693 + -1.0 458,693 + +0.4 458,693 + -1.2 458,693 + -1.1 458,693 + +0.4 458,693 + -1.4 458,693 + -0.0 458,693 + +0.5 458,693 + -1.5 458,693 + +0.3 458,693 + -1.1 458,693 + +0.9 458,694 - -0.6 458,694 - -1.8 458,694 - -0.9 458,694 - +0.6 458,694 - +1.0 458,699 + +0.9 458,700 - +1.9 458,790 + AO353_02135 0.13 -0.5 458,791 - AO353_02135 0.13 -2.4 458,825 + AO353_02135 0.17 +1.0 458,825 + AO353_02135 0.17 -1.4 458,825 + AO353_02135 0.17 -0.7 458,825 + AO353_02135 0.17 -1.7 458,825 + AO353_02135 0.17 +1.0 458,825 + AO353_02135 0.17 +0.9 458,825 + AO353_02135 0.17 -2.3 458,825 + AO353_02135 0.17 -0.2 458,825 + AO353_02135 0.17 -0.8 458,825 + AO353_02135 0.17 +0.5 458,825 + AO353_02135 0.17 -1.4 458,825 + AO353_02135 0.17 -0.6 458,826 - AO353_02135 0.17 -2.6 458,826 - AO353_02135 0.17 -1.3 458,826 - AO353_02135 0.17 -1.5 458,826 - AO353_02135 0.17 -1.9 458,886 - AO353_02135 0.23 +0.9 458,886 - AO353_02135 0.23 -0.2 458,984 + AO353_02135 0.34 -0.6 458,984 + AO353_02135 0.34 -0.6 458,984 + AO353_02135 0.34 +1.1 458,985 - AO353_02135 0.34 -1.4 458,985 - AO353_02135 0.34 -1.9 459,041 + AO353_02135 0.40 +0.1 459,041 + AO353_02135 0.40 -1.4 459,041 + AO353_02135 0.40 +0.4 459,041 + AO353_02135 0.40 -1.1 459,042 - AO353_02135 0.40 -2.3 459,042 - AO353_02135 0.40 +1.0 459,128 + AO353_02135 0.49 -1.7 459,201 - AO353_02135 0.57 -0.6 459,201 - AO353_02135 0.57 -2.0 459,201 - AO353_02135 0.57 -2.3 459,272 + AO353_02135 0.64 +0.3 459,272 + AO353_02135 0.64 -3.2 459,272 + AO353_02135 0.64 -0.7 459,272 + AO353_02135 0.64 -0.1 459,272 + AO353_02135 0.64 +0.2 459,272 + AO353_02135 0.64 -1.3 459,272 + AO353_02135 0.64 -2.3 459,272 + AO353_02135 0.64 +0.8 459,273 - AO353_02135 0.64 -1.7 459,273 - AO353_02135 0.64 -1.2 459,273 - AO353_02135 0.64 -1.4 459,273 - AO353_02135 0.64 -1.2 459,273 - AO353_02135 0.64 -0.1 459,273 - AO353_02135 0.64 -2.0 459,273 - AO353_02135 0.64 -1.5 459,273 - AO353_02135 0.64 +0.8 459,273 - AO353_02135 0.64 +0.4 459,273 - AO353_02135 0.64 +1.2 459,273 - AO353_02135 0.64 +0.3 459,273 - AO353_02135 0.64 +0.1 459,374 + AO353_02135 0.75 +0.1 459,374 + AO353_02135 0.75 +0.8 459,374 + AO353_02135 0.75 +3.3 459,554 + -0.1 459,554 + +0.6 459,554 + -0.1 459,555 - -1.2 459,576 + -0.3 459,576 + -0.6 459,576 + +0.8 459,576 + -0.3 459,576 + +2.8 459,576 + +0.1 459,576 + -1.6 459,577 - -0.8 459,577 - +4.6 459,577 - -1.3 459,577 - +0.1 459,577 - +0.1 459,577 - +1.4 459,577 - +1.0 459,577 - +0.6 459,577 - -1.5 459,577 - -0.3 459,577 - -1.1 459,577 - +0.2 459,577 - -1.1 459,578 + -0.3 459,578 + +0.4 459,578 + -0.3 459,578 + -2.4 459,578 + -0.4 459,578 + -1.0 459,578 + -2.3 459,578 + -0.8 459,578 + +0.7 459,578 + -3.3 459,578 + -1.4 459,578 + -0.2 459,578 + +0.2 459,578 + +0.9 459,579 - +0.6 459,579 - -0.4 459,579 - -0.6 459,579 - -0.9 459,715 + -0.8 459,778 - +1.1 459,821 - -0.4 459,824 - -1.1 459,824 - +0.8 459,824 - -2.0 459,951 + AO353_02140 0.24 -1.3 459,951 + AO353_02140 0.24 -1.9 459,951 + AO353_02140 0.24 -2.3 459,952 - AO353_02140 0.24 +0.2 459,952 - AO353_02140 0.24 -1.0 459,952 - AO353_02140 0.24 -0.2 459,953 + AO353_02140 0.24 +1.5 459,953 + AO353_02140 0.24 +0.0 459,953 + AO353_02140 0.24 -0.1 459,953 + AO353_02140 0.24 -1.3 459,953 + AO353_02140 0.24 -0.8 459,953 + AO353_02140 0.24 -2.3 459,953 + AO353_02140 0.24 -1.8 459,953 + AO353_02140 0.24 -0.9 459,953 + AO353_02140 0.24 +0.8 459,953 + AO353_02140 0.24 +0.8 459,953 + AO353_02140 0.24 -2.4 459,953 + AO353_02140 0.24 +1.7 459,954 - AO353_02140 0.25 -1.1 459,954 - AO353_02140 0.25 +0.3 459,954 - AO353_02140 0.25 -0.7 459,954 - AO353_02140 0.25 +0.6 459,954 - AO353_02140 0.25 -0.3 459,954 - AO353_02140 0.25 -0.0 459,954 - AO353_02140 0.25 -0.6 459,954 - AO353_02140 0.25 +2.8 459,954 - AO353_02140 0.25 -0.3 459,954 - AO353_02140 0.25 -0.2 459,954 - AO353_02140 0.25 +0.1 459,954 - AO353_02140 0.25 -0.5 459,954 - AO353_02140 0.25 -0.4 459,954 - AO353_02140 0.25 -0.3 459,957 + AO353_02140 0.26 -0.3 459,957 + AO353_02140 0.26 +0.9 459,957 + AO353_02140 0.26 -1.0 459,957 + AO353_02140 0.26 +0.3 459,957 + AO353_02140 0.26 +0.1 459,957 + AO353_02140 0.26 -1.8 459,957 + AO353_02140 0.26 -0.8 459,958 - AO353_02140 0.26 -0.8 459,958 - AO353_02140 0.26 -1.1 459,958 - AO353_02140 0.26 +0.5 459,958 - AO353_02140 0.26 -0.9 459,958 - AO353_02140 0.26 +0.6 459,958 - AO353_02140 0.26 -0.6 459,958 - AO353_02140 0.26 -2.9 460,008 - AO353_02140 0.43 -1.6 460,101 + AO353_02140 0.74 -0.6 460,101 + AO353_02140 0.74 +0.6 460,101 + AO353_02140 0.74 -1.4 460,101 + AO353_02140 0.74 +0.2 460,101 + AO353_02140 0.74 -0.4 460,102 - AO353_02140 0.74 +0.3 460,102 - AO353_02140 0.74 +3.0 460,102 - AO353_02140 0.74 -1.4 460,102 - AO353_02140 0.74 -0.6 460,102 - AO353_02140 0.74 -1.5 460,102 - AO353_02140 0.74 -0.3 460,102 - AO353_02140 0.74 +1.4 460,102 - AO353_02140 0.74 +0.8 460,161 + -0.2 460,161 + -1.3 460,161 + +0.5 460,371 + AO353_02145 0.34 -2.3 460,372 - AO353_02145 0.34 -0.6 460,372 - AO353_02145 0.34 +1.7 460,419 + AO353_02145 0.43 +0.3 460,419 + AO353_02145 0.43 -0.9 460,419 + AO353_02145 0.43 +1.2 460,420 - AO353_02145 0.43 +0.7 460,420 - AO353_02145 0.43 +5.1 460,420 - AO353_02145 0.43 +0.8 460,420 - AO353_02145 0.43 -0.1 460,494 + AO353_02145 0.57 +0.3 460,494 + AO353_02145 0.57 -1.2 460,495 - AO353_02145 0.58 +0.3 460,575 + AO353_02145 0.73 -1.7 460,575 + AO353_02145 0.73 -1.5 460,575 + AO353_02145 0.73 +0.0 460,575 + AO353_02145 0.73 +1.2 460,575 + AO353_02145 0.73 -0.2 460,575 + AO353_02145 0.73 +0.1 460,575 + AO353_02145 0.73 +0.2 460,575 + AO353_02145 0.73 -1.5 460,576 - AO353_02145 0.73 +0.6 460,576 - AO353_02145 0.73 -0.7
Or see this region's nucleotide sequence