Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01820

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_01815 and AO353_01820 overlap by 1 nucleotidesAO353_01820 and AO353_01825 are separated by 196 nucleotides AO353_01815: AO353_01815 - succinyl-CoA synthetase subunit alpha, at 380,266 to 381,147 _01815 AO353_01820: AO353_01820 - succinyl-CoA synthetase subunit beta, at 381,147 to 382,313 _01820 AO353_01825: AO353_01825 - dihydrolipoamide dehydrogenase, at 382,510 to 383,946 _01825 Position (kb) 381 382 383Strain fitness (log2 ratio) -1 0 1 2 3 4at 380.196 kb on + strandat 380.196 kb on + strandat 380.196 kb on + strandat 380.196 kb on + strandat 380.267 kb on + strandat 380.268 kb on - strandat 380.268 kb on - strandat 380.966 kb on - strand, within AO353_01815at 381.556 kb on - strand, within AO353_01820at 382.504 kb on - strandat 382.504 kb on - strandat 382.504 kb on - strandat 382.512 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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380,196 + -1.1
380,196 + +0.7
380,196 + +1.0
380,196 + -0.3
380,267 + -1.0
380,268 - -0.6
380,268 - -1.7
380,966 - AO353_01815 0.79 +4.0
381,556 - AO353_01820 0.35 -1.7
382,504 - +2.3
382,504 - +0.3
382,504 - -1.6
382,512 - -0.9

Or see this region's nucleotide sequence