Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01620 and AO353_01625 are separated by 59 nucleotides AO353_01625 and AO353_01630 are separated by 2 nucleotides AO353_01630 and AO353_01635 are separated by 104 nucleotides AO353_01635 and AO353_01640 are separated by 2 nucleotides AO353_01640 and AO353_01645 are separated by 370 nucleotides AO353_01645 and AO353_01650 are separated by 159 nucleotides
AO353_01620: AO353_01620 - AraC family transcriptional regulator, at 343,415 to 344,281
_01620
AO353_01625: AO353_01625 - tRNA-Gly, at 344,341 to 344,416
_01625
AO353_01630: AO353_01630 - tRNA-Glu, at 344,419 to 344,494
_01630
AO353_01635: AO353_01635 - tRNA-Gly, at 344,599 to 344,674
_01635
AO353_01640: AO353_01640 - tRNA-Glu, at 344,677 to 344,752
_01640
AO353_01645: AO353_01645 - hypothetical protein, at 345,123 to 345,881
_01645
AO353_01650: AO353_01650 - chemotaxis protein, at 346,041 to 348,008
_01650
Position (kb) 345
346 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 344.132 kb on + strand, within AO353_01620 at 344.132 kb on + strand, within AO353_01620 at 344.132 kb on + strand, within AO353_01620 at 344.133 kb on - strand, within AO353_01620 at 344.204 kb on - strand at 344.204 kb on - strand at 344.254 kb on + strand at 344.284 kb on + strand at 344.285 kb on - strand at 344.285 kb on - strand at 344.290 kb on + strand at 344.290 kb on + strand at 344.290 kb on + strand at 344.290 kb on + strand at 344.290 kb on + strand at 344.291 kb on - strand at 344.340 kb on - strand at 344.340 kb on - strand at 344.340 kb on - strand at 344.759 kb on - strand at 344.759 kb on - strand at 344.759 kb on - strand at 344.759 kb on - strand at 344.759 kb on - strand at 344.759 kb on - strand at 344.759 kb on - strand at 344.759 kb on - strand at 344.759 kb on - strand at 344.759 kb on - strand at 344.759 kb on - strand at 344.759 kb on - strand at 344.804 kb on - strand at 344.820 kb on - strand at 344.820 kb on - strand at 344.852 kb on + strand at 344.860 kb on + strand at 344.931 kb on + strand at 344.931 kb on + strand at 344.931 kb on + strand at 344.931 kb on + strand at 344.931 kb on + strand at 344.931 kb on + strand at 344.931 kb on + strand at 344.931 kb on + strand at 344.932 kb on - strand at 344.932 kb on - strand at 344.932 kb on - strand at 344.932 kb on - strand at 344.932 kb on - strand at 344.933 kb on + strand at 344.933 kb on + strand at 344.933 kb on + strand at 344.934 kb on - strand at 344.934 kb on - strand at 344.934 kb on - strand at 344.934 kb on - strand at 344.934 kb on - strand at 344.956 kb on + strand at 344.957 kb on - strand at 344.957 kb on - strand at 344.957 kb on - strand at 344.958 kb on + strand at 344.958 kb on + strand at 344.958 kb on + strand at 344.958 kb on + strand at 344.958 kb on + strand at 344.958 kb on + strand at 344.958 kb on + strand at 344.959 kb on - strand at 344.959 kb on - strand at 345.007 kb on + strand at 345.007 kb on + strand at 345.007 kb on + strand at 345.007 kb on + strand at 345.007 kb on + strand at 345.007 kb on + strand at 345.007 kb on + strand at 345.007 kb on + strand at 345.007 kb on + strand at 345.008 kb on - strand at 345.008 kb on - strand at 345.008 kb on - strand at 345.008 kb on - strand at 345.008 kb on - strand at 345.008 kb on - strand at 345.008 kb on - strand at 345.008 kb on - strand at 345.008 kb on - strand at 345.008 kb on - strand at 345.008 kb on - strand at 345.008 kb on - strand at 345.009 kb on + strand at 345.010 kb on - strand at 345.010 kb on - strand at 345.010 kb on - strand at 345.010 kb on - strand at 345.010 kb on - strand at 345.010 kb on - strand at 345.011 kb on + strand at 345.011 kb on + strand at 345.011 kb on + strand at 345.011 kb on + strand at 345.011 kb on + strand at 345.011 kb on + strand at 345.011 kb on + strand at 345.011 kb on + strand at 345.011 kb on + strand at 345.012 kb on - strand at 345.012 kb on - strand at 345.012 kb on - strand at 345.012 kb on - strand at 345.012 kb on - strand at 345.012 kb on - strand at 345.012 kb on - strand at 345.012 kb on - strand at 345.012 kb on - strand at 345.012 kb on - strand at 345.012 kb on - strand at 345.051 kb on + strand at 345.052 kb on - strand at 345.052 kb on - strand at 345.068 kb on - strand at 345.068 kb on - strand at 345.074 kb on + strand at 345.074 kb on + strand at 345.074 kb on + strand at 345.075 kb on - strand at 345.075 kb on - strand at 345.075 kb on - strand at 345.093 kb on + strand at 345.094 kb on - strand at 345.094 kb on - strand at 345.094 kb on - strand at 345.094 kb on - strand at 345.095 kb on + strand at 345.096 kb on - strand at 345.136 kb on + strand at 345.136 kb on + strand at 345.136 kb on + strand at 345.136 kb on + strand at 345.136 kb on + strand at 345.136 kb on + strand at 345.136 kb on + strand at 345.136 kb on + strand at 345.136 kb on + strand at 345.137 kb on - strand at 345.137 kb on - strand at 345.137 kb on - strand at 345.137 kb on - strand at 345.137 kb on - strand at 345.137 kb on - strand at 345.139 kb on + strand at 345.139 kb on + strand at 345.139 kb on + strand at 345.139 kb on + strand at 345.139 kb on + strand at 345.139 kb on + strand at 345.139 kb on + strand at 345.139 kb on + strand at 345.140 kb on - strand at 345.140 kb on - strand at 345.140 kb on - strand at 345.140 kb on - strand at 345.142 kb on + strand at 345.142 kb on + strand at 345.143 kb on - strand at 345.143 kb on - strand at 345.157 kb on + strand at 345.157 kb on + strand at 345.158 kb on - strand at 345.174 kb on + strand at 345.174 kb on + strand at 345.174 kb on + strand at 345.175 kb on - strand at 345.200 kb on + strand, within AO353_01645 at 345.200 kb on + strand, within AO353_01645 at 345.201 kb on - strand, within AO353_01645 at 345.481 kb on + strand, within AO353_01645 at 345.481 kb on + strand, within AO353_01645 at 345.481 kb on + strand, within AO353_01645 at 345.481 kb on + strand, within AO353_01645 at 345.482 kb on - strand, within AO353_01645 at 345.482 kb on - strand, within AO353_01645 at 345.482 kb on - strand, within AO353_01645 at 345.482 kb on - strand, within AO353_01645 at 345.482 kb on - strand, within AO353_01645 at 345.482 kb on - strand, within AO353_01645 at 345.592 kb on + strand, within AO353_01645 at 345.593 kb on - strand, within AO353_01645 at 345.690 kb on + strand, within AO353_01645 at 345.690 kb on + strand, within AO353_01645 at 345.691 kb on - strand, within AO353_01645 at 345.691 kb on - strand, within AO353_01645 at 345.691 kb on - strand, within AO353_01645 at 345.691 kb on - strand, within AO353_01645 at 345.691 kb on - strand, within AO353_01645 at 345.691 kb on - strand, within AO353_01645 at 345.720 kb on + strand, within AO353_01645 at 345.721 kb on - strand, within AO353_01645 at 345.738 kb on + strand, within AO353_01645 at 345.739 kb on - strand, within AO353_01645 at 345.809 kb on + strand at 345.869 kb on + strand at 345.870 kb on - strand at 345.873 kb on + strand at 345.873 kb on + strand at 345.873 kb on + strand at 345.873 kb on + strand at 345.873 kb on + strand at 345.874 kb on - strand at 345.874 kb on - strand at 345.874 kb on - strand at 345.883 kb on - strand at 345.949 kb on + strand at 345.949 kb on + strand at 345.949 kb on + strand at 345.949 kb on + strand at 345.949 kb on + strand at 345.950 kb on - strand at 345.950 kb on - strand at 345.969 kb on + strand at 345.969 kb on + strand at 345.977 kb on + strand at 345.977 kb on + strand at 345.978 kb on - strand at 345.978 kb on - strand at 345.978 kb on - strand at 345.978 kb on - strand at 346.042 kb on + strand at 346.042 kb on + strand at 346.042 kb on + strand at 346.042 kb on + strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.262 kb on + strand, within AO353_01650 at 346.332 kb on + strand, within AO353_01650 at 346.332 kb on + strand, within AO353_01650 at 346.332 kb on + strand, within AO353_01650 at 346.333 kb on - strand, within AO353_01650 at 346.333 kb on - strand, within AO353_01650 at 346.333 kb on - strand, within AO353_01650 at 346.637 kb on + strand, within AO353_01650 at 346.637 kb on + strand, within AO353_01650 at 346.638 kb on - strand, within AO353_01650 at 346.638 kb on - strand, within AO353_01650
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 344,132 + AO353_01620 0.83 -2.2 344,132 + AO353_01620 0.83 -1.0 344,132 + AO353_01620 0.83 -0.6 344,133 - AO353_01620 0.83 -1.4 344,204 - -1.5 344,204 - -0.7 344,254 + -1.2 344,284 + -1.7 344,285 - +2.0 344,285 - +1.7 344,290 + -0.6 344,290 + +0.2 344,290 + +0.6 344,290 + +0.7 344,290 + -0.9 344,291 - -1.4 344,340 - -0.9 344,340 - -1.2 344,340 - +0.7 344,759 - -1.5 344,759 - -1.6 344,759 - -0.6 344,759 - -1.0 344,759 - +1.1 344,759 - -1.0 344,759 - -2.0 344,759 - -1.1 344,759 - +0.1 344,759 - +0.1 344,759 - -0.4 344,759 - +1.4 344,804 - +0.1 344,820 - -1.0 344,820 - -2.3 344,852 + -3.2 344,860 + -1.5 344,931 + +0.0 344,931 + -0.4 344,931 + -0.5 344,931 + -0.4 344,931 + -1.0 344,931 + -0.5 344,931 + -1.2 344,931 + -1.4 344,932 - -1.0 344,932 - +1.6 344,932 - -0.7 344,932 - +0.7 344,932 - -1.7 344,933 + +0.9 344,933 + +0.5 344,933 + +0.2 344,934 - +1.3 344,934 - -0.0 344,934 - +0.3 344,934 - -2.2 344,934 - +1.6 344,956 + -0.2 344,957 - -1.1 344,957 - +0.8 344,957 - -1.7 344,958 + -0.5 344,958 + -1.0 344,958 + -0.0 344,958 + -0.2 344,958 + -0.9 344,958 + -0.4 344,958 + +1.6 344,959 - -0.3 344,959 - -1.9 345,007 + -0.4 345,007 + +0.2 345,007 + -1.2 345,007 + +0.1 345,007 + -0.7 345,007 + +0.3 345,007 + +0.9 345,007 + -0.7 345,007 + -0.6 345,008 - +0.2 345,008 - +0.4 345,008 - -0.1 345,008 - +1.1 345,008 - -0.0 345,008 - +1.3 345,008 - +0.1 345,008 - -1.0 345,008 - -0.6 345,008 - +1.3 345,008 - -0.0 345,008 - +3.0 345,009 + -0.8 345,010 - -0.3 345,010 - -1.6 345,010 - -3.3 345,010 - -0.5 345,010 - -1.0 345,010 - +1.1 345,011 + +0.2 345,011 + -1.2 345,011 + -1.0 345,011 + -0.2 345,011 + +0.0 345,011 + -0.3 345,011 + +0.3 345,011 + +0.4 345,011 + -0.4 345,012 - +0.4 345,012 - -0.4 345,012 - +0.8 345,012 - -1.3 345,012 - +0.5 345,012 - +1.5 345,012 - -1.1 345,012 - +1.4 345,012 - -1.0 345,012 - +0.2 345,012 - -0.5 345,051 + -0.4 345,052 - -0.2 345,052 - -0.6 345,068 - +1.2 345,068 - +3.9 345,074 + -0.2 345,074 + -1.0 345,074 + +1.6 345,075 - +2.1 345,075 - +1.2 345,075 - +1.2 345,093 + -1.9 345,094 - +1.1 345,094 - +1.7 345,094 - +0.7 345,094 - -0.4 345,095 + -0.3 345,096 - -0.0 345,136 + -1.3 345,136 + -1.6 345,136 + +0.8 345,136 + +0.1 345,136 + -1.4 345,136 + -1.8 345,136 + -2.0 345,136 + -1.7 345,136 + +0.8 345,137 - -0.0 345,137 - +0.6 345,137 - -1.5 345,137 - -0.7 345,137 - -0.0 345,137 - -0.3 345,139 + -0.3 345,139 + +0.5 345,139 + -0.6 345,139 + -1.6 345,139 + -1.4 345,139 + -0.8 345,139 + -0.7 345,139 + +1.8 345,140 - +1.8 345,140 - +0.7 345,140 - -1.5 345,140 - -0.8 345,142 + -0.6 345,142 + -0.1 345,143 - -0.1 345,143 - -0.4 345,157 + +0.3 345,157 + +1.2 345,158 - -0.4 345,174 + +0.5 345,174 + -1.6 345,174 + +0.5 345,175 - -1.1 345,200 + AO353_01645 0.10 -1.4 345,200 + AO353_01645 0.10 -1.6 345,201 - AO353_01645 0.10 +1.4 345,481 + AO353_01645 0.47 -1.8 345,481 + AO353_01645 0.47 +0.5 345,481 + AO353_01645 0.47 -0.4 345,481 + AO353_01645 0.47 -0.2 345,482 - AO353_01645 0.47 -1.3 345,482 - AO353_01645 0.47 -0.1 345,482 - AO353_01645 0.47 -2.1 345,482 - AO353_01645 0.47 -0.8 345,482 - AO353_01645 0.47 -2.1 345,482 - AO353_01645 0.47 +0.7 345,592 + AO353_01645 0.62 +0.3 345,593 - AO353_01645 0.62 -0.4 345,690 + AO353_01645 0.75 +0.5 345,690 + AO353_01645 0.75 -0.9 345,691 - AO353_01645 0.75 -0.5 345,691 - AO353_01645 0.75 +0.2 345,691 - AO353_01645 0.75 -1.0 345,691 - AO353_01645 0.75 +1.9 345,691 - AO353_01645 0.75 -0.8 345,691 - AO353_01645 0.75 -1.4 345,720 + AO353_01645 0.79 +0.5 345,721 - AO353_01645 0.79 -0.7 345,738 + AO353_01645 0.81 +0.4 345,739 - AO353_01645 0.81 -0.2 345,809 + +1.4 345,869 + -1.1 345,870 - -1.2 345,873 + +1.0 345,873 + -2.1 345,873 + +0.5 345,873 + -0.9 345,873 + -0.8 345,874 - +0.9 345,874 - -1.1 345,874 - +1.0 345,883 - -0.8 345,949 + +0.5 345,949 + -0.5 345,949 + +0.2 345,949 + -0.6 345,949 + -0.3 345,950 - -0.2 345,950 - -0.2 345,969 + -0.9 345,969 + -0.9 345,977 + -0.3 345,977 + -0.7 345,978 - -1.5 345,978 - +0.3 345,978 - -0.3 345,978 - -0.1 346,042 + -0.7 346,042 + -0.1 346,042 + -2.2 346,042 + -0.5 346,043 - -1.1 346,043 - -0.0 346,043 - -0.3 346,043 - -0.1 346,043 - +0.7 346,043 - -2.2 346,043 - -1.6 346,043 - +1.4 346,043 - +1.6 346,043 - +0.3 346,262 + AO353_01650 0.11 -0.3 346,332 + AO353_01650 0.15 +0.9 346,332 + AO353_01650 0.15 +1.3 346,332 + AO353_01650 0.15 -0.3 346,333 - AO353_01650 0.15 -0.0 346,333 - AO353_01650 0.15 -0.7 346,333 - AO353_01650 0.15 +0.5 346,637 + AO353_01650 0.30 -1.4 346,637 + AO353_01650 0.30 +0.7 346,638 - AO353_01650 0.30 -0.6 346,638 - AO353_01650 0.30 +0.7
Or see this region's nucleotide sequence