Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01410 and AO353_01415 are separated by 198 nucleotides AO353_01415 and AO353_01420 overlap by 1 nucleotides AO353_01420 and AO353_01425 overlap by 4 nucleotides AO353_01425 and AO353_01430 are separated by 136 nucleotides
AO353_01410: AO353_01410 - ribonuclease E, at 301,697 to 304,882
_01410
AO353_01415: AO353_01415 - molybdopterin-guanine dinucleotide biosynthesis protein MobA, at 305,081 to 305,686
_01415
AO353_01420: AO353_01420 - acylaldehyde oxidase, at 305,686 to 308,001
_01420
AO353_01425: AO353_01425 - (2Fe-2S)-binding protein, at 307,998 to 308,468
_01425
AO353_01430: AO353_01430 - UDP-N-acetylenolpyruvoylglucosamine reductase, at 308,605 to 309,624
_01430
Position (kb) 305
306
307
308
309 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 304.933 kb on + strand at 304.992 kb on + strand at 305.000 kb on + strand at 305.000 kb on + strand at 305.001 kb on - strand at 305.001 kb on - strand at 305.001 kb on - strand at 305.001 kb on - strand at 305.038 kb on + strand at 305.039 kb on - strand at 305.039 kb on - strand at 305.039 kb on - strand at 305.052 kb on - strand at 305.082 kb on + strand at 305.082 kb on + strand at 305.082 kb on + strand at 305.082 kb on + strand at 305.082 kb on + strand at 305.083 kb on - strand at 305.138 kb on + strand at 305.314 kb on + strand, within AO353_01415 at 305.314 kb on + strand, within AO353_01415 at 305.314 kb on + strand, within AO353_01415 at 305.329 kb on + strand, within AO353_01415 at 305.330 kb on - strand, within AO353_01415 at 305.330 kb on - strand, within AO353_01415 at 305.330 kb on - strand, within AO353_01415 at 305.330 kb on - strand, within AO353_01415 at 305.338 kb on + strand, within AO353_01415 at 305.445 kb on + strand, within AO353_01415 at 305.445 kb on + strand, within AO353_01415 at 305.446 kb on - strand, within AO353_01415 at 305.446 kb on - strand, within AO353_01415 at 305.446 kb on - strand, within AO353_01415 at 305.446 kb on - strand, within AO353_01415 at 305.446 kb on - strand, within AO353_01415 at 305.446 kb on - strand, within AO353_01415 at 305.742 kb on + strand at 305.742 kb on + strand at 305.897 kb on + strand at 305.897 kb on + strand at 305.897 kb on + strand at 305.897 kb on + strand at 305.897 kb on + strand at 305.897 kb on + strand at 305.897 kb on + strand at 305.897 kb on + strand at 305.897 kb on + strand at 305.897 kb on + strand at 305.897 kb on + strand at 305.897 kb on + strand at 305.897 kb on + strand at 305.897 kb on + strand at 305.898 kb on - strand at 305.898 kb on - strand at 305.898 kb on - strand at 305.898 kb on - strand at 305.898 kb on - strand at 305.901 kb on + strand at 305.901 kb on + strand at 305.901 kb on + strand at 305.901 kb on + strand at 305.901 kb on + strand at 305.902 kb on - strand at 305.902 kb on - strand at 305.902 kb on - strand at 305.902 kb on - strand at 305.902 kb on - strand at 305.902 kb on - strand at 305.902 kb on - strand at 305.902 kb on - strand at 305.902 kb on - strand at 306.051 kb on + strand, within AO353_01420 at 306.051 kb on + strand, within AO353_01420 at 306.051 kb on + strand, within AO353_01420 at 306.052 kb on - strand, within AO353_01420 at 306.107 kb on + strand, within AO353_01420 at 306.107 kb on + strand, within AO353_01420 at 306.107 kb on + strand at 306.107 kb on + strand, within AO353_01420 at 306.107 kb on + strand, within AO353_01420 at 306.107 kb on + strand, within AO353_01420 at 306.107 kb on + strand, within AO353_01420 at 306.107 kb on + strand, within AO353_01420 at 306.108 kb on - strand, within AO353_01420 at 306.108 kb on - strand, within AO353_01420 at 306.108 kb on - strand, within AO353_01420 at 306.108 kb on - strand, within AO353_01420 at 306.108 kb on - strand, within AO353_01420 at 306.108 kb on - strand, within AO353_01420 at 306.108 kb on - strand, within AO353_01420 at 306.108 kb on - strand at 306.108 kb on - strand, within AO353_01420 at 306.122 kb on + strand, within AO353_01420 at 306.122 kb on + strand, within AO353_01420 at 306.122 kb on + strand, within AO353_01420 at 306.123 kb on - strand, within AO353_01420 at 306.123 kb on - strand, within AO353_01420 at 306.162 kb on + strand, within AO353_01420 at 306.162 kb on + strand, within AO353_01420 at 306.162 kb on + strand, within AO353_01420 at 306.163 kb on - strand, within AO353_01420 at 306.163 kb on - strand, within AO353_01420 at 306.251 kb on + strand, within AO353_01420 at 306.251 kb on + strand, within AO353_01420 at 306.251 kb on + strand, within AO353_01420 at 306.252 kb on - strand, within AO353_01420 at 306.252 kb on - strand, within AO353_01420 at 306.252 kb on - strand, within AO353_01420 at 306.252 kb on - strand, within AO353_01420 at 306.252 kb on - strand, within AO353_01420 at 306.252 kb on - strand, within AO353_01420 at 306.252 kb on - strand, within AO353_01420 at 306.471 kb on - strand, within AO353_01420 at 306.585 kb on + strand, within AO353_01420 at 306.586 kb on - strand, within AO353_01420 at 306.586 kb on - strand, within AO353_01420 at 306.614 kb on + strand, within AO353_01420 at 306.614 kb on + strand, within AO353_01420 at 306.614 kb on + strand, within AO353_01420 at 306.614 kb on + strand, within AO353_01420 at 306.614 kb on + strand, within AO353_01420 at 306.614 kb on + strand, within AO353_01420 at 306.614 kb on + strand, within AO353_01420 at 306.638 kb on + strand, within AO353_01420 at 306.638 kb on + strand, within AO353_01420 at 306.638 kb on + strand, within AO353_01420 at 306.638 kb on + strand, within AO353_01420 at 306.639 kb on - strand, within AO353_01420 at 306.639 kb on - strand, within AO353_01420 at 306.639 kb on - strand, within AO353_01420 at 306.639 kb on - strand, within AO353_01420 at 306.639 kb on - strand, within AO353_01420 at 306.639 kb on - strand, within AO353_01420 at 306.639 kb on - strand, within AO353_01420 at 306.935 kb on + strand, within AO353_01420 at 306.935 kb on + strand, within AO353_01420 at 306.935 kb on + strand, within AO353_01420 at 306.935 kb on + strand, within AO353_01420 at 306.935 kb on + strand, within AO353_01420 at 306.936 kb on - strand, within AO353_01420 at 306.936 kb on - strand, within AO353_01420 at 306.936 kb on - strand, within AO353_01420 at 306.936 kb on - strand, within AO353_01420 at 306.936 kb on - strand, within AO353_01420 at 306.936 kb on - strand, within AO353_01420 at 306.936 kb on - strand, within AO353_01420 at 306.936 kb on - strand, within AO353_01420 at 306.936 kb on - strand, within AO353_01420 at 306.936 kb on - strand at 306.938 kb on + strand, within AO353_01420 at 306.938 kb on + strand, within AO353_01420 at 306.938 kb on + strand, within AO353_01420 at 306.938 kb on + strand, within AO353_01420 at 306.938 kb on + strand, within AO353_01420 at 306.938 kb on + strand, within AO353_01420 at 306.939 kb on - strand, within AO353_01420 at 306.939 kb on - strand, within AO353_01420 at 306.939 kb on - strand, within AO353_01420 at 306.939 kb on - strand, within AO353_01420 at 307.047 kb on - strand, within AO353_01420 at 307.128 kb on + strand, within AO353_01420 at 307.128 kb on + strand, within AO353_01420 at 307.128 kb on + strand, within AO353_01420 at 307.128 kb on + strand, within AO353_01420 at 307.128 kb on + strand, within AO353_01420 at 307.128 kb on + strand, within AO353_01420 at 307.129 kb on - strand, within AO353_01420 at 307.129 kb on - strand, within AO353_01420 at 307.129 kb on - strand, within AO353_01420 at 307.129 kb on - strand, within AO353_01420 at 307.265 kb on + strand, within AO353_01420 at 307.325 kb on + strand, within AO353_01420 at 307.368 kb on + strand, within AO353_01420 at 307.369 kb on - strand, within AO353_01420 at 307.386 kb on + strand, within AO353_01420 at 307.386 kb on + strand, within AO353_01420 at 307.388 kb on + strand, within AO353_01420 at 307.389 kb on - strand, within AO353_01420 at 307.504 kb on - strand, within AO353_01420 at 307.614 kb on - strand, within AO353_01420 at 307.817 kb on + strand at 307.817 kb on + strand at 307.817 kb on + strand at 307.817 kb on + strand at 307.817 kb on + strand at 307.818 kb on - strand at 307.818 kb on - strand at 307.818 kb on - strand at 307.968 kb on + strand at 307.968 kb on + strand at 307.969 kb on - strand at 307.969 kb on - strand at 307.969 kb on - strand at 308.059 kb on + strand, within AO353_01425 at 308.059 kb on + strand, within AO353_01425 at 308.059 kb on + strand, within AO353_01425 at 308.059 kb on + strand, within AO353_01425 at 308.059 kb on + strand, within AO353_01425 at 308.060 kb on - strand, within AO353_01425 at 308.078 kb on + strand, within AO353_01425 at 308.078 kb on + strand, within AO353_01425 at 308.078 kb on + strand, within AO353_01425 at 308.078 kb on + strand, within AO353_01425 at 308.078 kb on + strand, within AO353_01425 at 308.078 kb on + strand, within AO353_01425 at 308.078 kb on + strand, within AO353_01425 at 308.079 kb on - strand, within AO353_01425 at 308.079 kb on - strand, within AO353_01425 at 308.079 kb on - strand, within AO353_01425 at 308.079 kb on - strand, within AO353_01425 at 308.079 kb on - strand, within AO353_01425 at 308.322 kb on - strand, within AO353_01425 at 308.462 kb on + strand at 308.462 kb on + strand at 308.482 kb on + strand at 308.482 kb on + strand at 308.482 kb on + strand at 308.482 kb on + strand at 308.483 kb on - strand at 308.483 kb on - strand at 308.483 kb on - strand at 308.483 kb on - strand at 308.484 kb on + strand at 308.484 kb on + strand at 308.484 kb on + strand at 308.484 kb on + strand at 308.484 kb on + strand at 308.484 kb on + strand at 308.484 kb on + strand at 308.484 kb on + strand at 308.484 kb on + strand at 308.484 kb on + strand at 308.484 kb on + strand at 308.484 kb on + strand at 308.484 kb on + strand at 308.484 kb on + strand at 308.484 kb on + strand at 308.484 kb on + strand at 308.484 kb on + strand at 308.484 kb on + strand at 308.484 kb on + strand at 308.484 kb on + strand at 308.484 kb on + strand at 308.484 kb on + strand at 308.484 kb on + strand at 308.484 kb on + strand at 308.484 kb on + strand at 308.485 kb on - strand at 308.485 kb on - strand at 308.485 kb on - strand at 308.485 kb on - strand at 308.485 kb on - strand at 308.485 kb on - strand at 308.485 kb on - strand at 308.485 kb on - strand at 308.485 kb on - strand at 308.485 kb on - strand at 308.485 kb on - strand at 308.485 kb on - strand at 308.485 kb on - strand at 308.485 kb on - strand at 308.488 kb on + strand at 308.488 kb on + strand at 308.488 kb on + strand at 308.488 kb on + strand at 308.488 kb on + strand at 308.488 kb on + strand at 308.488 kb on + strand at 308.489 kb on - strand at 308.489 kb on - strand at 308.489 kb on - strand at 308.489 kb on - strand at 308.489 kb on - strand at 308.489 kb on - strand at 308.489 kb on - strand at 308.489 kb on - strand at 308.489 kb on - strand at 308.494 kb on + strand at 308.494 kb on + strand at 308.494 kb on + strand at 308.526 kb on - strand at 308.526 kb on - strand at 308.526 kb on - strand at 308.530 kb on + strand at 308.530 kb on + strand at 308.530 kb on + strand at 308.601 kb on + strand at 308.602 kb on - strand at 308.602 kb on - strand at 308.610 kb on - strand at 308.610 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 304,933 + -1.8 304,992 + -2.1 305,000 + -1.7 305,000 + +0.3 305,001 - +1.3 305,001 - +0.7 305,001 - -0.1 305,001 - +0.8 305,038 + -1.5 305,039 - +0.1 305,039 - -0.1 305,039 - +1.5 305,052 - +0.2 305,082 + +0.1 305,082 + -1.4 305,082 + -2.2 305,082 + -0.1 305,082 + +0.1 305,083 - +1.5 305,138 + -1.8 305,314 + AO353_01415 0.38 -1.1 305,314 + AO353_01415 0.38 -0.8 305,314 + AO353_01415 0.38 -1.1 305,329 + AO353_01415 0.41 -0.3 305,330 - AO353_01415 0.41 -0.3 305,330 - AO353_01415 0.41 -0.9 305,330 - AO353_01415 0.41 +0.7 305,330 - AO353_01415 0.41 +0.0 305,338 + AO353_01415 0.42 -0.7 305,445 + AO353_01415 0.60 +0.4 305,445 + AO353_01415 0.60 -0.6 305,446 - AO353_01415 0.60 -0.9 305,446 - AO353_01415 0.60 -1.1 305,446 - AO353_01415 0.60 +0.7 305,446 - AO353_01415 0.60 -0.0 305,446 - AO353_01415 0.60 +0.9 305,446 - AO353_01415 0.60 +0.0 305,742 + +0.1 305,742 + -0.3 305,897 + -0.5 305,897 + +0.2 305,897 + +1.0 305,897 + -2.7 305,897 + -0.5 305,897 + -0.5 305,897 + -1.1 305,897 + +0.5 305,897 + +0.9 305,897 + -1.1 305,897 + -1.8 305,897 + -0.7 305,897 + +0.2 305,897 + -1.8 305,898 - +0.6 305,898 - +1.4 305,898 - -0.0 305,898 - +0.0 305,898 - +0.9 305,901 + +0.5 305,901 + +0.4 305,901 + +1.3 305,901 + +0.1 305,901 + -0.7 305,902 - -1.3 305,902 - -0.7 305,902 - -0.8 305,902 - -0.0 305,902 - +0.9 305,902 - -0.2 305,902 - +0.5 305,902 - -0.4 305,902 - -1.1 306,051 + AO353_01420 0.16 +0.3 306,051 + AO353_01420 0.16 -0.3 306,051 + AO353_01420 0.16 +0.0 306,052 - AO353_01420 0.16 -0.1 306,107 + AO353_01420 0.18 -0.4 306,107 + AO353_01420 0.18 -0.4 306,107 + +0.9 306,107 + AO353_01420 0.18 +1.7 306,107 + AO353_01420 0.18 -1.0 306,107 + AO353_01420 0.18 +0.8 306,107 + AO353_01420 0.18 +0.9 306,107 + AO353_01420 0.18 -0.5 306,108 - AO353_01420 0.18 -2.8 306,108 - AO353_01420 0.18 +1.1 306,108 - AO353_01420 0.18 -0.3 306,108 - AO353_01420 0.18 +0.3 306,108 - AO353_01420 0.18 -0.7 306,108 - AO353_01420 0.18 -0.8 306,108 - AO353_01420 0.18 -0.7 306,108 - +1.3 306,108 - AO353_01420 0.18 +1.0 306,122 + AO353_01420 0.19 -0.7 306,122 + AO353_01420 0.19 +0.8 306,122 + AO353_01420 0.19 -0.9 306,123 - AO353_01420 0.19 -1.2 306,123 - AO353_01420 0.19 -0.9 306,162 + AO353_01420 0.21 +0.1 306,162 + AO353_01420 0.21 -1.5 306,162 + AO353_01420 0.21 -0.6 306,163 - AO353_01420 0.21 +0.9 306,163 - AO353_01420 0.21 -0.8 306,251 + AO353_01420 0.24 -0.1 306,251 + AO353_01420 0.24 -0.4 306,251 + AO353_01420 0.24 +1.1 306,252 - AO353_01420 0.24 -0.2 306,252 - AO353_01420 0.24 -0.1 306,252 - AO353_01420 0.24 +1.1 306,252 - AO353_01420 0.24 -0.7 306,252 - AO353_01420 0.24 -0.5 306,252 - AO353_01420 0.24 +0.1 306,252 - AO353_01420 0.24 -1.7 306,471 - AO353_01420 0.34 -1.1 306,585 + AO353_01420 0.39 -0.1 306,586 - AO353_01420 0.39 +0.6 306,586 - AO353_01420 0.39 +0.5 306,614 + AO353_01420 0.40 -0.3 306,614 + AO353_01420 0.40 +0.0 306,614 + AO353_01420 0.40 -1.3 306,614 + AO353_01420 0.40 -0.1 306,614 + AO353_01420 0.40 +1.3 306,614 + AO353_01420 0.40 +0.4 306,614 + AO353_01420 0.40 -1.6 306,638 + AO353_01420 0.41 -0.4 306,638 + AO353_01420 0.41 +0.3 306,638 + AO353_01420 0.41 -1.1 306,638 + AO353_01420 0.41 -0.1 306,639 - AO353_01420 0.41 +0.0 306,639 - AO353_01420 0.41 -0.1 306,639 - AO353_01420 0.41 -0.4 306,639 - AO353_01420 0.41 -2.0 306,639 - AO353_01420 0.41 -1.4 306,639 - AO353_01420 0.41 -1.5 306,639 - AO353_01420 0.41 +0.0 306,935 + AO353_01420 0.54 +0.5 306,935 + AO353_01420 0.54 -1.4 306,935 + AO353_01420 0.54 +1.0 306,935 + AO353_01420 0.54 -0.3 306,935 + AO353_01420 0.54 -1.7 306,936 - AO353_01420 0.54 -0.4 306,936 - AO353_01420 0.54 -0.8 306,936 - AO353_01420 0.54 -0.1 306,936 - AO353_01420 0.54 -1.2 306,936 - AO353_01420 0.54 +0.3 306,936 - AO353_01420 0.54 -0.3 306,936 - AO353_01420 0.54 +0.0 306,936 - AO353_01420 0.54 -1.3 306,936 - AO353_01420 0.54 -0.3 306,936 - +3.3 306,938 + AO353_01420 0.54 +0.4 306,938 + AO353_01420 0.54 -0.7 306,938 + AO353_01420 0.54 -2.2 306,938 + AO353_01420 0.54 +1.9 306,938 + AO353_01420 0.54 +0.5 306,938 + AO353_01420 0.54 -0.5 306,939 - AO353_01420 0.54 -0.2 306,939 - AO353_01420 0.54 -0.2 306,939 - AO353_01420 0.54 +0.9 306,939 - AO353_01420 0.54 -0.1 307,047 - AO353_01420 0.59 +0.3 307,128 + AO353_01420 0.62 -1.1 307,128 + AO353_01420 0.62 +0.1 307,128 + AO353_01420 0.62 +0.8 307,128 + AO353_01420 0.62 -1.2 307,128 + AO353_01420 0.62 -1.2 307,128 + AO353_01420 0.62 +0.2 307,129 - AO353_01420 0.62 -0.6 307,129 - AO353_01420 0.62 -1.1 307,129 - AO353_01420 0.62 +1.4 307,129 - AO353_01420 0.62 +0.4 307,265 + AO353_01420 0.68 +0.3 307,325 + AO353_01420 0.71 +0.0 307,368 + AO353_01420 0.73 +0.4 307,369 - AO353_01420 0.73 +1.6 307,386 + AO353_01420 0.73 +0.3 307,386 + AO353_01420 0.73 -0.8 307,388 + AO353_01420 0.73 +1.3 307,389 - AO353_01420 0.74 -0.7 307,504 - AO353_01420 0.78 +0.2 307,614 - AO353_01420 0.83 -0.9 307,817 + +0.7 307,817 + +0.7 307,817 + +0.5 307,817 + -1.3 307,817 + -1.2 307,818 - +0.6 307,818 - -1.3 307,818 - +0.4 307,968 + +0.1 307,968 + +0.5 307,969 - -0.3 307,969 - -1.3 307,969 - +0.5 308,059 + AO353_01425 0.13 -1.8 308,059 + AO353_01425 0.13 +0.7 308,059 + AO353_01425 0.13 -0.5 308,059 + AO353_01425 0.13 -0.4 308,059 + AO353_01425 0.13 +2.6 308,060 - AO353_01425 0.13 -0.0 308,078 + AO353_01425 0.17 -1.2 308,078 + AO353_01425 0.17 -0.2 308,078 + AO353_01425 0.17 -1.1 308,078 + AO353_01425 0.17 +0.3 308,078 + AO353_01425 0.17 -0.9 308,078 + AO353_01425 0.17 -0.3 308,078 + AO353_01425 0.17 -0.7 308,079 - AO353_01425 0.17 +0.3 308,079 - AO353_01425 0.17 -1.0 308,079 - AO353_01425 0.17 -1.6 308,079 - AO353_01425 0.17 -0.3 308,079 - AO353_01425 0.17 -1.3 308,322 - AO353_01425 0.69 -1.0 308,462 + -1.2 308,462 + +0.8 308,482 + +0.7 308,482 + +0.2 308,482 + +0.9 308,482 + -0.3 308,483 - -0.1 308,483 - +0.3 308,483 - -1.2 308,483 - +1.3 308,484 + +0.5 308,484 + +0.1 308,484 + -0.5 308,484 + -1.1 308,484 + -2.6 308,484 + -0.5 308,484 + +0.3 308,484 + -0.0 308,484 + -1.7 308,484 + +0.6 308,484 + -0.8 308,484 + +0.7 308,484 + -2.1 308,484 + -0.5 308,484 + -0.2 308,484 + +0.5 308,484 + +1.3 308,484 + -0.5 308,484 + -1.2 308,484 + +1.3 308,484 + +0.1 308,484 + -1.3 308,484 + +0.9 308,484 + +0.5 308,484 + -0.5 308,485 - +1.5 308,485 - +0.0 308,485 - -1.8 308,485 - -0.5 308,485 - -0.2 308,485 - -0.0 308,485 - +0.7 308,485 - -0.7 308,485 - +0.6 308,485 - -0.7 308,485 - -0.1 308,485 - +0.9 308,485 - +1.3 308,485 - +1.7 308,488 + +1.3 308,488 + +0.4 308,488 + +0.5 308,488 + +1.2 308,488 + -1.3 308,488 + +0.5 308,488 + +1.3 308,489 - +0.4 308,489 - +0.7 308,489 - +0.8 308,489 - -0.3 308,489 - -1.5 308,489 - +0.1 308,489 - -0.1 308,489 - -0.3 308,489 - +1.1 308,494 + -1.3 308,494 + +0.7 308,494 + -1.6 308,526 - +0.5 308,526 - -1.0 308,526 - +1.0 308,530 + -1.9 308,530 + -0.7 308,530 + -0.6 308,601 + -0.7 308,602 - -0.1 308,602 - -1.2 308,610 - -0.4 308,610 - -0.9
Or see this region's nucleotide sequence