Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS26165

Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS26160 and RS_RS19930 are separated by 50 nucleotidesRS_RS19930 and RS_RS26165 are separated by 204 nucleotidesRS_RS26165 and RS_RS19935 are separated by 255 nucleotides RS_RS26160: RS_RS26160 - hypothetical protein, at 722,201 to 722,533 _RS26160 RS_RS19930: RS_RS19930 - DUF2147 domain-containing protein, at 722,584 to 723,054 _RS19930 RS_RS26165: RS_RS26165 - hypothetical protein, at 723,259 to 723,366 _RS26165 RS_RS19935: RS_RS19935 - oxidoreductase, at 723,622 to 724,452 _RS19935 Position (kb) 723 724Strain fitness (log2 ratio) -2 -1 0 1 2at 722.269 kb on + strand, within RS_RS26160at 722.270 kb on - strand, within RS_RS26160at 722.270 kb on - strand, within RS_RS26160at 722.305 kb on + strand, within RS_RS26160at 722.306 kb on - strand, within RS_RS26160at 722.335 kb on + strand, within RS_RS26160at 722.335 kb on + strand, within RS_RS26160at 722.336 kb on - strand, within RS_RS26160at 722.336 kb on - strand, within RS_RS26160at 722.336 kb on - strand, within RS_RS26160at 722.413 kb on + strand, within RS_RS26160at 722.413 kb on + strand, within RS_RS26160at 722.414 kb on - strand, within RS_RS26160at 722.486 kb on - strand, within RS_RS26160at 722.525 kb on + strandat 722.605 kb on + strandat 722.605 kb on + strandat 722.606 kb on - strandat 722.620 kb on + strandat 722.687 kb on + strand, within RS_RS19930at 722.687 kb on + strand, within RS_RS19930at 722.687 kb on + strand, within RS_RS19930at 722.687 kb on + strand, within RS_RS19930at 722.687 kb on + strand, within RS_RS19930at 722.688 kb on - strand, within RS_RS19930at 722.688 kb on - strand, within RS_RS19930at 722.688 kb on - strand, within RS_RS19930at 722.688 kb on - strand, within RS_RS19930at 722.711 kb on + strand, within RS_RS19930at 722.711 kb on + strand, within RS_RS19930at 722.712 kb on - strand, within RS_RS19930at 722.861 kb on + strand, within RS_RS19930at 722.861 kb on + strand, within RS_RS19930at 722.897 kb on + strand, within RS_RS19930at 722.897 kb on + strand, within RS_RS19930at 722.897 kb on + strand, within RS_RS19930at 722.897 kb on + strand, within RS_RS19930at 722.897 kb on + strand, within RS_RS19930at 722.897 kb on + strand, within RS_RS19930at 722.897 kb on + strand, within RS_RS19930at 722.898 kb on - strand, within RS_RS19930at 722.898 kb on - strand, within RS_RS19930at 722.898 kb on - strand, within RS_RS19930at 722.898 kb on - strand, within RS_RS19930at 722.980 kb on + strand, within RS_RS19930at 722.981 kb on - strand, within RS_RS19930at 722.981 kb on - strand, within RS_RS19930at 723.000 kb on + strand, within RS_RS19930at 723.000 kb on + strand, within RS_RS19930at 723.034 kb on + strandat 723.035 kb on - strandat 723.035 kb on - strandat 723.035 kb on - strandat 723.035 kb on - strandat 723.035 kb on - strandat 723.035 kb on - strandat 723.037 kb on + strandat 723.038 kb on - strandat 723.070 kb on + strandat 723.071 kb on - strandat 723.088 kb on - strandat 723.088 kb on - strandat 723.129 kb on + strandat 723.129 kb on + strandat 723.129 kb on + strandat 723.129 kb on + strandat 723.129 kb on + strandat 723.216 kb on + strandat 723.216 kb on + strandat 723.217 kb on - strandat 723.305 kb on + strand, within RS_RS26165at 723.306 kb on - strand, within RS_RS26165at 723.367 kb on + strandat 723.367 kb on + strandat 723.368 kb on - strandat 723.368 kb on - strandat 723.368 kb on - strandat 723.368 kb on - strandat 723.368 kb on - strandat 723.461 kb on + strandat 723.461 kb on + strandat 723.468 kb on + strandat 723.520 kb on + strandat 723.520 kb on + strandat 723.520 kb on + strandat 723.520 kb on + strandat 723.520 kb on + strandat 723.520 kb on + strandat 723.521 kb on - strandat 723.521 kb on - strandat 723.521 kb on - strandat 723.521 kb on - strandat 723.521 kb on - strandat 723.521 kb on - strandat 723.521 kb on - strandat 723.585 kb on + strandat 723.586 kb on - strandat 723.586 kb on - strandat 723.721 kb on + strand, within RS_RS19935at 723.721 kb on + strand, within RS_RS19935at 723.721 kb on + strand, within RS_RS19935at 723.721 kb on + strand, within RS_RS19935at 723.721 kb on + strand, within RS_RS19935at 723.721 kb on + strand, within RS_RS19935at 723.722 kb on - strand, within RS_RS19935at 723.722 kb on - strand, within RS_RS19935at 723.776 kb on + strand, within RS_RS19935at 723.776 kb on + strand, within RS_RS19935at 723.776 kb on + strand, within RS_RS19935at 723.776 kb on + strand, within RS_RS19935at 723.845 kb on + strand, within RS_RS19935at 723.846 kb on - strand, within RS_RS19935at 723.846 kb on - strand, within RS_RS19935at 723.846 kb on - strand, within RS_RS19935at 723.889 kb on + strand, within RS_RS19935at 723.889 kb on + strand, within RS_RS19935at 723.889 kb on + strand, within RS_RS19935at 723.889 kb on + strand, within RS_RS19935at 723.889 kb on + strand, within RS_RS19935at 723.889 kb on + strand, within RS_RS19935at 723.889 kb on + strand, within RS_RS19935at 723.890 kb on - strand, within RS_RS19935at 723.890 kb on - strand, within RS_RS19935at 723.929 kb on - strand, within RS_RS19935at 723.929 kb on - strand, within RS_RS19935at 724.045 kb on + strand, within RS_RS19935at 724.046 kb on - strand, within RS_RS19935at 724.066 kb on + strand, within RS_RS19935at 724.067 kb on - strand, within RS_RS19935at 724.067 kb on - strand, within RS_RS19935at 724.067 kb on - strand, within RS_RS19935at 724.134 kb on + strand, within RS_RS19935at 724.135 kb on - strand, within RS_RS19935at 724.229 kb on - strand, within RS_RS19935at 724.273 kb on + strand, within RS_RS19935at 724.274 kb on - strand, within RS_RS19935at 724.274 kb on - strand, within RS_RS19935at 724.315 kb on - strand, within RS_RS19935at 724.315 kb on - strand, within RS_RS19935at 724.358 kb on - strand, within RS_RS19935

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi
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722,269 + RS_RS26160 0.20 -0.1
722,270 - RS_RS26160 0.21 +0.8
722,270 - RS_RS26160 0.21 +0.7
722,305 + RS_RS26160 0.31 -0.2
722,306 - RS_RS26160 0.32 -0.3
722,335 + RS_RS26160 0.40 -0.0
722,335 + RS_RS26160 0.40 +0.1
722,336 - RS_RS26160 0.41 +0.5
722,336 - RS_RS26160 0.41 -0.3
722,336 - RS_RS26160 0.41 -0.4
722,413 + RS_RS26160 0.64 -0.0
722,413 + RS_RS26160 0.64 +0.2
722,414 - RS_RS26160 0.64 +0.6
722,486 - RS_RS26160 0.86 -0.4
722,525 + -0.4
722,605 + -0.8
722,605 + -0.2
722,606 - -0.1
722,620 + +0.1
722,687 + RS_RS19930 0.22 +0.6
722,687 + RS_RS19930 0.22 -1.2
722,687 + RS_RS19930 0.22 -1.1
722,687 + RS_RS19930 0.22 +0.0
722,687 + RS_RS19930 0.22 -0.6
722,688 - RS_RS19930 0.22 +0.7
722,688 - RS_RS19930 0.22 -0.3
722,688 - RS_RS19930 0.22 -0.1
722,688 - RS_RS19930 0.22 -0.5
722,711 + RS_RS19930 0.27 +0.4
722,711 + RS_RS19930 0.27 +0.2
722,712 - RS_RS19930 0.27 -0.2
722,861 + RS_RS19930 0.59 -0.0
722,861 + RS_RS19930 0.59 +0.2
722,897 + RS_RS19930 0.66 +0.4
722,897 + RS_RS19930 0.66 +0.2
722,897 + RS_RS19930 0.66 +0.8
722,897 + RS_RS19930 0.66 +0.6
722,897 + RS_RS19930 0.66 +0.3
722,897 + RS_RS19930 0.66 -2.5
722,897 + RS_RS19930 0.66 -0.2
722,898 - RS_RS19930 0.67 -1.5
722,898 - RS_RS19930 0.67 +0.5
722,898 - RS_RS19930 0.67 -0.1
722,898 - RS_RS19930 0.67 -1.1
722,980 + RS_RS19930 0.84 -0.0
722,981 - RS_RS19930 0.84 -1.1
722,981 - RS_RS19930 0.84 -2.0
723,000 + RS_RS19930 0.88 +1.7
723,000 + RS_RS19930 0.88 -0.2
723,034 + +0.3
723,035 - +0.8
723,035 - -1.0
723,035 - +0.3
723,035 - +0.3
723,035 - -2.2
723,035 - +0.0
723,037 + +0.2
723,038 - -0.1
723,070 + +0.8
723,071 - +0.3
723,088 - +2.2
723,088 - +0.7
723,129 + +0.4
723,129 + -0.6
723,129 + -1.0
723,129 + -0.0
723,129 + -1.1
723,216 + +1.2
723,216 + +1.0
723,217 - -1.9
723,305 + RS_RS26165 0.43 +0.8
723,306 - RS_RS26165 0.44 +0.8
723,367 + -0.1
723,367 + +0.2
723,368 - -0.5
723,368 - +0.8
723,368 - +1.0
723,368 - -0.6
723,368 - +0.2
723,461 + +1.1
723,461 + -0.9
723,468 + -0.7
723,520 + +0.2
723,520 + +1.7
723,520 + +0.0
723,520 + +0.5
723,520 + +1.4
723,520 + +0.5
723,521 - +0.6
723,521 - -0.2
723,521 - -0.2
723,521 - +2.0
723,521 - -0.1
723,521 - -0.3
723,521 - +0.7
723,585 + -0.1
723,586 - +0.7
723,586 - +0.4
723,721 + RS_RS19935 0.12 -1.6
723,721 + RS_RS19935 0.12 -0.9
723,721 + RS_RS19935 0.12 +0.4
723,721 + RS_RS19935 0.12 -0.4
723,721 + RS_RS19935 0.12 +1.0
723,721 + RS_RS19935 0.12 +1.1
723,722 - RS_RS19935 0.12 -0.4
723,722 - RS_RS19935 0.12 +1.0
723,776 + RS_RS19935 0.19 -1.3
723,776 + RS_RS19935 0.19 -0.7
723,776 + RS_RS19935 0.19 -0.6
723,776 + RS_RS19935 0.19 -2.1
723,845 + RS_RS19935 0.27 -0.6
723,846 - RS_RS19935 0.27 +0.7
723,846 - RS_RS19935 0.27 -0.3
723,846 - RS_RS19935 0.27 +0.4
723,889 + RS_RS19935 0.32 -1.3
723,889 + RS_RS19935 0.32 +1.2
723,889 + RS_RS19935 0.32 +0.2
723,889 + RS_RS19935 0.32 -0.2
723,889 + RS_RS19935 0.32 -0.3
723,889 + RS_RS19935 0.32 +0.6
723,889 + RS_RS19935 0.32 +0.8
723,890 - RS_RS19935 0.32 +0.8
723,890 - RS_RS19935 0.32 +1.6
723,929 - RS_RS19935 0.37 -0.0
723,929 - RS_RS19935 0.37 -0.2
724,045 + RS_RS19935 0.51 +0.4
724,046 - RS_RS19935 0.51 -0.1
724,066 + RS_RS19935 0.53 -0.2
724,067 - RS_RS19935 0.54 -0.3
724,067 - RS_RS19935 0.54 -1.9
724,067 - RS_RS19935 0.54 -0.7
724,134 + RS_RS19935 0.62 -0.1
724,135 - RS_RS19935 0.62 +0.4
724,229 - RS_RS19935 0.73 -0.9
724,273 + RS_RS19935 0.78 +0.3
724,274 - RS_RS19935 0.78 +0.2
724,274 - RS_RS19935 0.78 -0.5
724,315 - RS_RS19935 0.83 -0.9
724,315 - RS_RS19935 0.83 +0.9
724,358 - RS_RS19935 0.89 +1.1

Or see this region's nucleotide sequence