Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS06360

Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS06355 and RS_RS06360 are separated by 285 nucleotidesRS_RS06360 and RS_RS06365 are separated by 139 nucleotides RS_RS06355: RS_RS06355 - glycerophosphodiester phosphodiesterase, at 1,347,576 to 1,348,334 _RS06355 RS_RS06360: RS_RS06360 - 2-oxoglutarate dehydrogenase E1 component, at 1,348,620 to 1,351,481 _RS06360 RS_RS06365: RS_RS06365 - dihydrolipoyllysine-residue succinyltransferase, at 1,351,621 to 1,352,877 _RS06365 Position (kb) 1348 1349 1350 1351 1352Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1348.233 kb on + strand, within RS_RS06355at 1348.233 kb on + strand, within RS_RS06355at 1348.369 kb on + strandat 1348.369 kb on + strandat 1351.479 kb on + strandat 1351.553 kb on + strandat 1351.553 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi
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1,348,233 + RS_RS06355 0.87 -0.2
1,348,233 + RS_RS06355 0.87 -5.0
1,348,369 + -0.3
1,348,369 + +0.3
1,351,479 + -0.2
1,351,553 + -0.0
1,351,553 + +0.8

Or see this region's nucleotide sequence