Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS03810 and RS_RS03815 are separated by 113 nucleotides RS_RS03815 and RS_RS03820 are separated by 10 nucleotides RS_RS03820 and RS_RS03825 are separated by 49 nucleotides
RS_RS03810: RS_RS03810 - acyl-CoA dehydrogenase, at 799,647 to 800,840
_RS03810
RS_RS03815: RS_RS03815 - IclR family transcriptional regulator, at 800,954 to 801,775
_RS03815
RS_RS03820: RS_RS03820 - tryptophan 2,3-dioxygenase, at 801,786 to 802,622
_RS03820
RS_RS03825: RS_RS03825 - kynureninase, at 802,672 to 803,925
_RS03825
Position (kb) 801
802
803 Strain fitness (log2 ratio) -2
-1
0
1 at 800.913 kb on - strand at 801.170 kb on + strand, within RS_RS03815 at 801.191 kb on + strand, within RS_RS03815 at 801.341 kb on + strand, within RS_RS03815 at 801.342 kb on - strand, within RS_RS03815 at 801.443 kb on + strand, within RS_RS03815 at 801.653 kb on + strand, within RS_RS03815 at 801.654 kb on - strand, within RS_RS03815 at 801.774 kb on - strand at 801.851 kb on - strand at 801.976 kb on + strand, within RS_RS03820 at 801.977 kb on - strand, within RS_RS03820 at 801.977 kb on - strand, within RS_RS03820 at 802.007 kb on - strand, within RS_RS03820 at 802.042 kb on + strand, within RS_RS03820 at 802.042 kb on + strand, within RS_RS03820 at 802.111 kb on + strand, within RS_RS03820 at 802.112 kb on - strand, within RS_RS03820 at 802.168 kb on + strand, within RS_RS03820 at 802.549 kb on + strand at 802.558 kb on + strand at 802.558 kb on + strand at 802.558 kb on + strand at 802.686 kb on + strand at 802.686 kb on + strand at 802.686 kb on + strand at 802.687 kb on - strand at 802.687 kb on - strand at 802.883 kb on + strand, within RS_RS03825 at 802.883 kb on + strand, within RS_RS03825 at 802.884 kb on - strand, within RS_RS03825 at 803.117 kb on + strand, within RS_RS03825 at 803.118 kb on - strand, within RS_RS03825 at 803.118 kb on - strand, within RS_RS03825 at 803.240 kb on + strand, within RS_RS03825 at 803.241 kb on - strand, within RS_RS03825 at 803.241 kb on - strand, within RS_RS03825 at 803.246 kb on + strand, within RS_RS03825 at 803.246 kb on + strand, within RS_RS03825 at 803.247 kb on - strand, within RS_RS03825 at 803.247 kb on - strand, within RS_RS03825 at 803.378 kb on + strand, within RS_RS03825 at 803.378 kb on + strand, within RS_RS03825 at 803.378 kb on + strand, within RS_RS03825 at 803.378 kb on + strand, within RS_RS03825 at 803.379 kb on - strand, within RS_RS03825 at 803.397 kb on - strand, within RS_RS03825 at 803.523 kb on - strand, within RS_RS03825 at 803.523 kb on - strand, within RS_RS03825
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi remove 800,913 - -1.7 801,170 + RS_RS03815 0.26 -0.3 801,191 + RS_RS03815 0.29 +0.3 801,341 + RS_RS03815 0.47 +0.0 801,342 - RS_RS03815 0.47 +0.0 801,443 + RS_RS03815 0.59 +0.8 801,653 + RS_RS03815 0.85 +1.3 801,654 - RS_RS03815 0.85 -0.1 801,774 - +0.4 801,851 - +0.3 801,976 + RS_RS03820 0.23 +0.3 801,977 - RS_RS03820 0.23 -0.3 801,977 - RS_RS03820 0.23 -0.4 802,007 - RS_RS03820 0.26 +1.7 802,042 + RS_RS03820 0.31 +1.1 802,042 + RS_RS03820 0.31 +1.2 802,111 + RS_RS03820 0.39 +1.7 802,112 - RS_RS03820 0.39 -0.2 802,168 + RS_RS03820 0.46 +1.2 802,549 + -0.2 802,558 + -1.2 802,558 + +1.1 802,558 + +0.7 802,686 + -0.9 802,686 + -0.4 802,686 + +1.2 802,687 - +0.2 802,687 - -0.5 802,883 + RS_RS03825 0.17 -0.6 802,883 + RS_RS03825 0.17 +0.4 802,884 - RS_RS03825 0.17 +0.7 803,117 + RS_RS03825 0.35 -1.9 803,118 - RS_RS03825 0.36 -1.2 803,118 - RS_RS03825 0.36 +1.1 803,240 + RS_RS03825 0.45 +0.5 803,241 - RS_RS03825 0.45 +0.4 803,241 - RS_RS03825 0.45 -0.1 803,246 + RS_RS03825 0.46 +0.2 803,246 + RS_RS03825 0.46 +0.5 803,247 - RS_RS03825 0.46 +0.9 803,247 - RS_RS03825 0.46 -1.8 803,378 + RS_RS03825 0.56 +1.3 803,378 + RS_RS03825 0.56 -2.3 803,378 + RS_RS03825 0.56 +0.5 803,378 + RS_RS03825 0.56 -1.8 803,379 - RS_RS03825 0.56 -1.8 803,397 - RS_RS03825 0.58 +0.3 803,523 - RS_RS03825 0.68 -1.3 803,523 - RS_RS03825 0.68 -0.3
Or see this region's nucleotide sequence