Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS02220 and RS_RS02225 are separated by 28 nucleotides RS_RS02225 and RS_RS02230 are separated by 141 nucleotides
RS_RS02220: RS_RS02220 - NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, at 476,091 to 476,924
_RS02220
RS_RS02225: RS_RS02225 - threonine ammonia-lyase, biosynthetic, at 476,953 to 478,476
_RS02225
RS_RS02230: RS_RS02230 - potassium channel protein, at 478,618 to 479,541
_RS02230
Position (kb) 476
477
478
479 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 475.953 kb on - strand at 476.011 kb on + strand at 476.092 kb on + strand at 476.177 kb on + strand, within RS_RS02220 at 476.178 kb on - strand, within RS_RS02220 at 476.179 kb on + strand, within RS_RS02220 at 476.291 kb on - strand, within RS_RS02220 at 476.330 kb on - strand, within RS_RS02220 at 476.761 kb on + strand, within RS_RS02220 at 476.869 kb on + strand at 478.595 kb on + strand at 478.596 kb on - strand at 478.729 kb on + strand, within RS_RS02230 at 478.730 kb on - strand, within RS_RS02230 at 478.730 kb on - strand, within RS_RS02230 at 479.185 kb on + strand, within RS_RS02230 at 479.186 kb on - strand, within RS_RS02230 at 479.194 kb on + strand, within RS_RS02230 at 479.195 kb on - strand, within RS_RS02230 at 479.428 kb on + strand, within RS_RS02230 at 479.429 kb on - strand, within RS_RS02230
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi remove 475,953 - -2.2 476,011 + +0.7 476,092 + +0.3 476,177 + RS_RS02220 0.10 +0.6 476,178 - RS_RS02220 0.10 -3.4 476,179 + RS_RS02220 0.11 -0.4 476,291 - RS_RS02220 0.24 -1.3 476,330 - RS_RS02220 0.29 -2.8 476,761 + RS_RS02220 0.80 -1.4 476,869 + -3.3 478,595 + -0.7 478,596 - +0.6 478,729 + RS_RS02230 0.12 -0.5 478,730 - RS_RS02230 0.12 +0.4 478,730 - RS_RS02230 0.12 +0.8 479,185 + RS_RS02230 0.61 -0.0 479,186 - RS_RS02230 0.61 -2.0 479,194 + RS_RS02230 0.62 -1.3 479,195 - RS_RS02230 0.62 +0.5 479,428 + RS_RS02230 0.88 +0.7 479,429 - RS_RS02230 0.88 -0.7
Or see this region's nucleotide sequence