Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS00645

Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS00640 and RS_RS00645 are separated by 253 nucleotidesRS_RS00645 and RS_RS00650 are separated by 20 nucleotides RS_RS00640: RS_RS00640 - HPP family protein, at 151,429 to 152,565 _RS00640 RS_RS00645: RS_RS00645 - phosphatase PAP2 family protein, at 152,819 to 154,792 _RS00645 RS_RS00650: RS_RS00650 - AraC family transcriptional regulator, at 154,813 to 155,694 _RS00650 Position (kb) 152 153 154 155Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 151.883 kb on + strand, within RS_RS00640at 152.067 kb on - strand, within RS_RS00640at 152.067 kb on - strand, within RS_RS00640at 152.433 kb on - strand, within RS_RS00640at 152.561 kb on + strandat 152.562 kb on - strandat 152.617 kb on + strandat 152.618 kb on - strandat 152.771 kb on - strandat 152.771 kb on - strandat 153.053 kb on + strand, within RS_RS00645at 153.266 kb on + strand, within RS_RS00645at 153.266 kb on + strand, within RS_RS00645at 153.267 kb on - strand, within RS_RS00645at 153.267 kb on - strand, within RS_RS00645at 153.267 kb on - strand, within RS_RS00645at 153.267 kb on - strand, within RS_RS00645at 153.317 kb on + strand, within RS_RS00645at 153.344 kb on + strand, within RS_RS00645at 153.344 kb on + strand, within RS_RS00645at 153.345 kb on - strand, within RS_RS00645at 153.412 kb on + strand, within RS_RS00645at 153.412 kb on + strand, within RS_RS00645at 153.413 kb on - strand, within RS_RS00645at 153.449 kb on + strand, within RS_RS00645at 153.449 kb on + strand, within RS_RS00645at 153.449 kb on + strand, within RS_RS00645at 153.449 kb on + strand, within RS_RS00645at 153.572 kb on + strand, within RS_RS00645at 153.572 kb on + strand, within RS_RS00645at 153.573 kb on - strand, within RS_RS00645at 153.720 kb on - strand, within RS_RS00645at 153.720 kb on - strand, within RS_RS00645at 153.861 kb on - strand, within RS_RS00645at 153.896 kb on + strand, within RS_RS00645at 153.896 kb on + strand, within RS_RS00645at 154.244 kb on + strand, within RS_RS00645at 154.244 kb on + strand, within RS_RS00645at 154.470 kb on - strand, within RS_RS00645at 154.470 kb on - strand, within RS_RS00645at 154.470 kb on - strand, within RS_RS00645at 154.754 kb on + strandat 154.755 kb on - strandat 154.831 kb on + strandat 154.831 kb on + strandat 154.831 kb on + strandat 154.831 kb on + strandat 154.832 kb on - strandat 154.832 kb on - strandat 154.940 kb on + strand, within RS_RS00650at 154.940 kb on + strand, within RS_RS00650at 154.940 kb on + strand, within RS_RS00650at 154.940 kb on + strand, within RS_RS00650at 154.941 kb on - strand, within RS_RS00650at 154.947 kb on - strand, within RS_RS00650at 154.947 kb on - strand, within RS_RS00650at 155.000 kb on + strand, within RS_RS00650at 155.132 kb on + strand, within RS_RS00650at 155.132 kb on + strand, within RS_RS00650at 155.132 kb on + strand, within RS_RS00650at 155.132 kb on + strand, within RS_RS00650at 155.132 kb on + strand, within RS_RS00650at 155.133 kb on - strand, within RS_RS00650at 155.133 kb on - strand, within RS_RS00650at 155.133 kb on - strand, within RS_RS00650at 155.133 kb on - strand, within RS_RS00650at 155.329 kb on + strand, within RS_RS00650at 155.329 kb on + strand, within RS_RS00650at 155.329 kb on + strand, within RS_RS00650at 155.330 kb on - strand, within RS_RS00650at 155.330 kb on - strand, within RS_RS00650at 155.330 kb on - strand, within RS_RS00650at 155.522 kb on + strand, within RS_RS00650at 155.522 kb on + strand, within RS_RS00650at 155.522 kb on + strand, within RS_RS00650at 155.522 kb on + strand, within RS_RS00650at 155.522 kb on + strand, within RS_RS00650at 155.522 kb on + strand, within RS_RS00650at 155.523 kb on - strand, within RS_RS00650at 155.523 kb on - strand, within RS_RS00650at 155.523 kb on - strand, within RS_RS00650at 155.523 kb on - strand, within RS_RS00650at 155.523 kb on - strand, within RS_RS00650at 155.673 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi
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151,883 + RS_RS00640 0.40 +0.4
152,067 - RS_RS00640 0.56 +0.4
152,067 - RS_RS00640 0.56 -1.6
152,433 - RS_RS00640 0.88 +0.5
152,561 + +0.3
152,562 - +1.2
152,617 + -0.1
152,618 - +1.5
152,771 - -4.3
152,771 - -0.2
153,053 + RS_RS00645 0.12 -0.1
153,266 + RS_RS00645 0.23 +0.9
153,266 + RS_RS00645 0.23 +0.8
153,267 - RS_RS00645 0.23 +0.4
153,267 - RS_RS00645 0.23 -0.6
153,267 - RS_RS00645 0.23 -0.3
153,267 - RS_RS00645 0.23 +1.0
153,317 + RS_RS00645 0.25 +0.8
153,344 + RS_RS00645 0.27 +0.7
153,344 + RS_RS00645 0.27 -1.5
153,345 - RS_RS00645 0.27 -0.8
153,412 + RS_RS00645 0.30 -1.3
153,412 + RS_RS00645 0.30 -1.7
153,413 - RS_RS00645 0.30 +0.6
153,449 + RS_RS00645 0.32 -2.8
153,449 + RS_RS00645 0.32 +0.5
153,449 + RS_RS00645 0.32 +0.4
153,449 + RS_RS00645 0.32 -1.0
153,572 + RS_RS00645 0.38 -0.3
153,572 + RS_RS00645 0.38 -1.7
153,573 - RS_RS00645 0.38 -3.2
153,720 - RS_RS00645 0.46 -0.1
153,720 - RS_RS00645 0.46 +0.1
153,861 - RS_RS00645 0.53 -0.3
153,896 + RS_RS00645 0.55 +0.4
153,896 + RS_RS00645 0.55 -0.2
154,244 + RS_RS00645 0.72 +0.9
154,244 + RS_RS00645 0.72 -0.0
154,470 - RS_RS00645 0.84 +1.0
154,470 - RS_RS00645 0.84 -0.6
154,470 - RS_RS00645 0.84 +1.1
154,754 + +0.7
154,755 - +0.1
154,831 + -0.3
154,831 + +0.5
154,831 + -1.3
154,831 + -0.0
154,832 - -0.2
154,832 - -0.1
154,940 + RS_RS00650 0.14 +1.6
154,940 + RS_RS00650 0.14 +1.0
154,940 + RS_RS00650 0.14 +0.6
154,940 + RS_RS00650 0.14 +0.2
154,941 - RS_RS00650 0.15 -4.9
154,947 - RS_RS00650 0.15 -0.6
154,947 - RS_RS00650 0.15 -0.2
155,000 + RS_RS00650 0.21 +1.6
155,132 + RS_RS00650 0.36 +0.4
155,132 + RS_RS00650 0.36 -0.5
155,132 + RS_RS00650 0.36 +0.1
155,132 + RS_RS00650 0.36 -0.1
155,132 + RS_RS00650 0.36 -1.0
155,133 - RS_RS00650 0.36 +0.3
155,133 - RS_RS00650 0.36 +1.5
155,133 - RS_RS00650 0.36 +0.0
155,133 - RS_RS00650 0.36 +0.0
155,329 + RS_RS00650 0.59 +0.3
155,329 + RS_RS00650 0.59 -1.4
155,329 + RS_RS00650 0.59 -0.3
155,330 - RS_RS00650 0.59 +1.1
155,330 - RS_RS00650 0.59 -0.5
155,330 - RS_RS00650 0.59 +0.8
155,522 + RS_RS00650 0.80 -1.8
155,522 + RS_RS00650 0.80 -0.4
155,522 + RS_RS00650 0.80 +0.6
155,522 + RS_RS00650 0.80 -0.3
155,522 + RS_RS00650 0.80 -1.6
155,522 + RS_RS00650 0.80 -0.2
155,523 - RS_RS00650 0.80 -1.4
155,523 - RS_RS00650 0.80 +0.5
155,523 - RS_RS00650 0.80 -0.9
155,523 - RS_RS00650 0.80 +0.2
155,523 - RS_RS00650 0.80 +0.2
155,673 - -0.0

Or see this region's nucleotide sequence