Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS00270 and RS_RS00275 are separated by 85 nucleotides RS_RS00275 and RS_RS00280 overlap by 22 nucleotides RS_RS00280 and RS_RS00285 are separated by 40 nucleotides
RS_RS00270: RS_RS00270 - Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit B, at 59,072 to 60,538
_RS00270
RS_RS00275: RS_RS00275 - dienelactone hydrolase, at 60,624 to 61,601
_RS00275
RS_RS00280: RS_RS00280 - hypothetical protein, at 61,580 to 62,080
_RS00280
RS_RS00285: RS_RS00285 - Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit A, at 62,121 to 63,608
_RS00285
Position (kb) 60
61
62 Strain fitness (log2 ratio) -2
-1
0
1 at 60.576 kb on + strand at 60.576 kb on + strand at 60.576 kb on + strand at 60.577 kb on - strand at 60.611 kb on - strand at 60.611 kb on - strand at 60.611 kb on - strand at 60.611 kb on - strand at 60.639 kb on - strand at 61.379 kb on - strand, within RS_RS00275 at 61.644 kb on + strand, within RS_RS00280 at 61.645 kb on - strand, within RS_RS00280
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi remove 60,576 + -0.4 60,576 + -0.1 60,576 + +0.6 60,577 - -2.5 60,611 - -0.0 60,611 - -0.3 60,611 - -0.1 60,611 - +0.1 60,639 - +1.1 61,379 - RS_RS00275 0.77 -0.0 61,644 + RS_RS00280 0.13 +0.8 61,645 - RS_RS00280 0.13 +0.3
Or see this region's nucleotide sequence