Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01850

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse1; 10 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01845 and MMP_RS01850 are separated by 124 nucleotidesMMP_RS01850 and MMP_RS01855 are separated by 42 nucleotides MMP_RS01845: MMP_RS01845 - hypothetical protein, at 340,591 to 341,472 _RS01845 MMP_RS01850: MMP_RS01850 - phosphate ABC transporter substrate-binding protein, at 341,597 to 342,424 _RS01850 MMP_RS01855: MMP_RS01855 - 2-hydroxyacyl-CoA dehydratase family protein, at 342,467 to 343,588 _RS01855 Position (kb) 341 342 343Strain fitness (log2 ratio) -2 -1 0 1at 340.708 kb on - strand, within MMP_RS01845at 340.711 kb on + strand, within MMP_RS01845at 340.714 kb on + strand, within MMP_RS01845at 340.726 kb on - strand, within MMP_RS01845at 340.763 kb on - strand, within MMP_RS01845at 340.763 kb on - strand, within MMP_RS01845at 340.769 kb on - strand, within MMP_RS01845at 340.769 kb on - strand, within MMP_RS01845at 340.774 kb on + strand, within MMP_RS01845at 340.781 kb on - strand, within MMP_RS01845at 340.790 kb on - strand, within MMP_RS01845at 340.791 kb on + strand, within MMP_RS01845at 340.848 kb on - strand, within MMP_RS01845at 340.888 kb on - strand, within MMP_RS01845at 340.888 kb on - strand, within MMP_RS01845at 340.888 kb on - strand, within MMP_RS01845at 340.889 kb on + strand, within MMP_RS01845at 340.918 kb on - strand, within MMP_RS01845at 341.012 kb on - strand, within MMP_RS01845at 341.044 kb on + strand, within MMP_RS01845at 341.070 kb on - strand, within MMP_RS01845at 341.132 kb on + strand, within MMP_RS01845at 341.133 kb on - strand, within MMP_RS01845at 341.139 kb on - strand, within MMP_RS01845at 341.140 kb on + strand, within MMP_RS01845at 341.140 kb on + strand, within MMP_RS01845at 341.140 kb on + strand, within MMP_RS01845at 341.142 kb on + strand, within MMP_RS01845at 341.181 kb on + strand, within MMP_RS01845at 341.218 kb on - strand, within MMP_RS01845at 341.219 kb on + strand, within MMP_RS01845at 341.221 kb on + strand, within MMP_RS01845at 341.249 kb on + strand, within MMP_RS01845at 341.330 kb on - strand, within MMP_RS01845at 341.330 kb on - strand, within MMP_RS01845at 341.472 kb on - strandat 341.472 kb on - strandat 341.475 kb on - strandat 341.475 kb on - strandat 341.476 kb on + strandat 341.476 kb on + strandat 341.476 kb on + strandat 341.476 kb on + strandat 341.501 kb on - strandat 341.501 kb on - strandat 341.603 kb on - strandat 341.658 kb on - strandat 341.780 kb on - strand, within MMP_RS01850at 341.780 kb on - strand, within MMP_RS01850at 341.781 kb on + strand, within MMP_RS01850at 341.806 kb on + strand, within MMP_RS01850at 341.806 kb on + strand, within MMP_RS01850at 341.910 kb on + strand, within MMP_RS01850at 341.942 kb on + strand, within MMP_RS01850at 341.972 kb on - strand, within MMP_RS01850at 342.047 kb on + strand, within MMP_RS01850at 342.247 kb on - strand, within MMP_RS01850at 342.265 kb on + strand, within MMP_RS01850at 342.393 kb on + strandat 342.627 kb on - strand, within MMP_RS01855at 342.628 kb on + strand, within MMP_RS01855at 342.631 kb on + strand, within MMP_RS01855at 342.632 kb on - strand, within MMP_RS01855at 342.727 kb on + strand, within MMP_RS01855at 342.823 kb on - strand, within MMP_RS01855at 342.832 kb on - strand, within MMP_RS01855at 342.833 kb on + strand, within MMP_RS01855at 342.971 kb on - strand, within MMP_RS01855at 342.972 kb on + strand, within MMP_RS01855at 343.318 kb on + strand, within MMP_RS01855at 343.403 kb on - strand, within MMP_RS01855

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse1; 10 generations
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340,708 - MMP_RS01845 0.13 +0.0
340,711 + MMP_RS01845 0.14 -0.7
340,714 + MMP_RS01845 0.14 +0.0
340,726 - MMP_RS01845 0.15 -1.4
340,763 - MMP_RS01845 0.20 -0.5
340,763 - MMP_RS01845 0.20 +0.3
340,769 - MMP_RS01845 0.20 -0.4
340,769 - MMP_RS01845 0.20 +1.0
340,774 + MMP_RS01845 0.21 -0.0
340,781 - MMP_RS01845 0.22 -1.5
340,790 - MMP_RS01845 0.23 -0.1
340,791 + MMP_RS01845 0.23 +0.8
340,848 - MMP_RS01845 0.29 +0.8
340,888 - MMP_RS01845 0.34 +0.8
340,888 - MMP_RS01845 0.34 +0.9
340,888 - MMP_RS01845 0.34 -0.3
340,889 + MMP_RS01845 0.34 -0.2
340,918 - MMP_RS01845 0.37 +0.5
341,012 - MMP_RS01845 0.48 -0.3
341,044 + MMP_RS01845 0.51 -0.2
341,070 - MMP_RS01845 0.54 +0.4
341,132 + MMP_RS01845 0.61 +0.9
341,133 - MMP_RS01845 0.61 +0.1
341,139 - MMP_RS01845 0.62 +1.1
341,140 + MMP_RS01845 0.62 -0.1
341,140 + MMP_RS01845 0.62 +0.2
341,140 + MMP_RS01845 0.62 +0.9
341,142 + MMP_RS01845 0.62 -0.2
341,181 + MMP_RS01845 0.67 +0.7
341,218 - MMP_RS01845 0.71 -0.1
341,219 + MMP_RS01845 0.71 -1.3
341,221 + MMP_RS01845 0.71 +0.5
341,249 + MMP_RS01845 0.75 +0.7
341,330 - MMP_RS01845 0.84 +0.4
341,330 - MMP_RS01845 0.84 -0.0
341,472 - -1.7
341,472 - +0.0
341,475 - +0.2
341,475 - -0.8
341,476 + -1.4
341,476 + +0.2
341,476 + -1.0
341,476 + -0.4
341,501 - +0.2
341,501 - +0.6
341,603 - +1.0
341,658 - +0.8
341,780 - MMP_RS01850 0.22 -0.0
341,780 - MMP_RS01850 0.22 -0.1
341,781 + MMP_RS01850 0.22 +0.8
341,806 + MMP_RS01850 0.25 +0.0
341,806 + MMP_RS01850 0.25 +0.2
341,910 + MMP_RS01850 0.38 +1.0
341,942 + MMP_RS01850 0.42 +0.4
341,972 - MMP_RS01850 0.45 +0.6
342,047 + MMP_RS01850 0.54 -0.3
342,247 - MMP_RS01850 0.79 -0.4
342,265 + MMP_RS01850 0.81 -0.1
342,393 + +0.0
342,627 - MMP_RS01855 0.14 +0.4
342,628 + MMP_RS01855 0.14 -0.4
342,631 + MMP_RS01855 0.15 +1.1
342,632 - MMP_RS01855 0.15 -1.9
342,727 + MMP_RS01855 0.23 +0.8
342,823 - MMP_RS01855 0.32 +0.5
342,832 - MMP_RS01855 0.33 +0.0
342,833 + MMP_RS01855 0.33 -0.3
342,971 - MMP_RS01855 0.45 +0.8
342,972 + MMP_RS01855 0.45 +0.6
343,318 + MMP_RS01855 0.76 +0.9
343,403 - MMP_RS01855 0.83 +0.2

Or see this region's nucleotide sequence