Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse1; 10 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01480 and MMP_RS01485 are separated by 251 nucleotides MMP_RS01485 and MMP_RS01490 are separated by 24 nucleotides
MMP_RS01480: MMP_RS01480 - hydrogenase expression/formation protein HypE, at 273,244 to 274,248
_RS01480
MMP_RS01485: MMP_RS01485 - right-handed parallel beta-helix repeat-containing protein, at 274,500 to 277,178
_RS01485
MMP_RS01490: MMP_RS01490 - tetratricopeptide repeat protein, at 277,203 to 278,237
_RS01490
Position (kb) 274
275
276
277
278 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 273.684 kb on + strand at 273.965 kb on - strand at 274.098 kb on + strand at 274.444 kb on - strand at 274.452 kb on + strand at 274.632 kb on + strand at 274.810 kb on - strand, within MMP_RS01485 at 274.853 kb on + strand, within MMP_RS01485 at 275.316 kb on + strand, within MMP_RS01485 at 275.915 kb on - strand, within MMP_RS01485 at 275.916 kb on + strand, within MMP_RS01485 at 275.920 kb on - strand, within MMP_RS01485 at 276.133 kb on - strand, within MMP_RS01485 at 276.295 kb on - strand, within MMP_RS01485 at 276.432 kb on - strand, within MMP_RS01485 at 276.474 kb on + strand, within MMP_RS01485 at 276.541 kb on - strand, within MMP_RS01485 at 276.561 kb on - strand, within MMP_RS01485 at 276.711 kb on + strand, within MMP_RS01485 at 276.744 kb on + strand, within MMP_RS01485 at 276.779 kb on - strand, within MMP_RS01485 at 276.805 kb on - strand, within MMP_RS01485 at 277.224 kb on + strand at 277.319 kb on + strand, within MMP_RS01490 at 277.540 kb on - strand, within MMP_RS01490 at 277.625 kb on + strand, within MMP_RS01490 at 277.685 kb on - strand, within MMP_RS01490 at 277.685 kb on - strand, within MMP_RS01490 at 277.800 kb on + strand, within MMP_RS01490 at 277.932 kb on - strand, within MMP_RS01490 at 277.950 kb on + strand, within MMP_RS01490
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse1; 10 generations remove 273,684 + -4.1 273,965 - -3.8 274,098 + -3.3 274,444 - -0.4 274,452 + +1.2 274,632 + -0.2 274,810 - MMP_RS01485 0.12 -0.2 274,853 + MMP_RS01485 0.13 +0.7 275,316 + MMP_RS01485 0.30 +0.5 275,915 - MMP_RS01485 0.53 +0.8 275,916 + MMP_RS01485 0.53 -0.6 275,920 - MMP_RS01485 0.53 +0.3 276,133 - MMP_RS01485 0.61 +0.9 276,295 - MMP_RS01485 0.67 +0.6 276,432 - MMP_RS01485 0.72 -0.1 276,474 + MMP_RS01485 0.74 -0.1 276,541 - MMP_RS01485 0.76 +0.3 276,561 - MMP_RS01485 0.77 +0.2 276,711 + MMP_RS01485 0.83 +0.4 276,744 + MMP_RS01485 0.84 -0.4 276,779 - MMP_RS01485 0.85 +1.2 276,805 - MMP_RS01485 0.86 +0.5 277,224 + +0.7 277,319 + MMP_RS01490 0.11 -0.1 277,540 - MMP_RS01490 0.33 -0.6 277,625 + MMP_RS01490 0.41 +0.1 277,685 - MMP_RS01490 0.47 +1.2 277,685 - MMP_RS01490 0.47 +0.7 277,800 + MMP_RS01490 0.58 +0.3 277,932 - MMP_RS01490 0.70 +0.7 277,950 + MMP_RS01490 0.72 -0.7
Or see this region's nucleotide sequence