Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse1; 10 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01200 and MMP_RS01205 are separated by 368 nucleotides MMP_RS01205 and MMP_RS01210 are separated by 182 nucleotides
MMP_RS01200: MMP_RS01200 - hypothetical protein, at 225,188 to 225,925
_RS01200
MMP_RS01205: MMP_RS01205 - manganese-dependent inorganic pyrophosphatase, at 226,294 to 227,217
_RS01205
MMP_RS01210: MMP_RS01210 - sodium:solute symporter, at 227,400 to 228,833
_RS01210
Position (kb) 226
227
228 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 225.412 kb on + strand, within MMP_RS01200 at 225.412 kb on + strand, within MMP_RS01200 at 225.572 kb on + strand, within MMP_RS01200 at 225.596 kb on + strand, within MMP_RS01200 at 225.693 kb on - strand, within MMP_RS01200 at 225.946 kb on - strand at 226.015 kb on + strand at 226.068 kb on - strand at 226.091 kb on - strand at 226.169 kb on - strand at 226.208 kb on - strand at 226.215 kb on + strand at 226.215 kb on + strand at 226.215 kb on + strand at 226.218 kb on - strand at 226.218 kb on - strand at 226.218 kb on - strand at 226.219 kb on + strand at 226.219 kb on + strand at 226.224 kb on - strand at 226.225 kb on + strand at 226.228 kb on - strand at 226.229 kb on + strand at 226.291 kb on - strand at 226.301 kb on + strand at 226.301 kb on + strand at 227.039 kb on - strand at 227.151 kb on - strand at 227.184 kb on + strand at 227.279 kb on + strand at 227.281 kb on + strand at 227.308 kb on + strand at 227.310 kb on + strand at 227.326 kb on - strand at 227.326 kb on - strand at 227.363 kb on - strand at 227.363 kb on - strand at 227.364 kb on + strand at 227.373 kb on - strand at 227.373 kb on - strand at 227.374 kb on + strand at 227.407 kb on - strand at 227.408 kb on + strand at 227.588 kb on + strand, within MMP_RS01210 at 227.636 kb on + strand, within MMP_RS01210 at 227.636 kb on + strand, within MMP_RS01210 at 227.792 kb on + strand, within MMP_RS01210 at 228.056 kb on - strand, within MMP_RS01210 at 228.197 kb on - strand, within MMP_RS01210 at 228.214 kb on + strand, within MMP_RS01210 at 228.215 kb on - strand, within MMP_RS01210 at 228.215 kb on - strand, within MMP_RS01210
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse1; 10 generations remove 225,412 + MMP_RS01200 0.30 +0.1 225,412 + MMP_RS01200 0.30 -0.4 225,572 + MMP_RS01200 0.52 -0.4 225,596 + MMP_RS01200 0.55 -0.2 225,693 - MMP_RS01200 0.68 -0.4 225,946 - +0.0 226,015 + +0.5 226,068 - -0.6 226,091 - -0.7 226,169 - +0.2 226,208 - +0.6 226,215 + -1.0 226,215 + +0.3 226,215 + +0.5 226,218 - -0.5 226,218 - +0.7 226,218 - -0.2 226,219 + -0.0 226,219 + +0.4 226,224 - +0.3 226,225 + +0.2 226,228 - -3.3 226,229 + -1.1 226,291 - -2.3 226,301 + -1.9 226,301 + -3.4 227,039 - -4.8 227,151 - -2.0 227,184 + -2.1 227,279 + +0.6 227,281 + +0.7 227,308 + -0.1 227,310 + +0.8 227,326 - +0.8 227,326 - -0.0 227,363 - +0.5 227,363 - +0.2 227,364 + +0.1 227,373 - -1.2 227,373 - -0.2 227,374 + -2.1 227,407 - -0.2 227,408 + -0.0 227,588 + MMP_RS01210 0.13 +1.2 227,636 + MMP_RS01210 0.16 -0.8 227,636 + MMP_RS01210 0.16 -0.3 227,792 + MMP_RS01210 0.27 +0.1 228,056 - MMP_RS01210 0.46 +0.6 228,197 - MMP_RS01210 0.56 +0.0 228,214 + MMP_RS01210 0.57 -0.9 228,215 - MMP_RS01210 0.57 -0.6 228,215 - MMP_RS01210 0.57 -0.3
Or see this region's nucleotide sequence