Strain Fitness in Rahnella sp. WP5 around EX31_RS10710

Experiment: L-Serine (N); RCH2 media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10705 and EX31_RS10710 are separated by 49 nucleotidesEX31_RS10710 and EX31_RS10715 overlap by 4 nucleotidesEX31_RS10715 and EX31_RS10720 are separated by 216 nucleotides EX31_RS10705: EX31_RS10705 - adhesin, at 58,080 to 59,216 _RS10705 EX31_RS10710: EX31_RS10710 - hypothetical protein, at 59,266 to 59,682 _RS10710 EX31_RS10715: EX31_RS10715 - hypothetical protein, at 59,679 to 59,903 _RS10715 EX31_RS10720: EX31_RS10720 - NAD(P)H:quinone oxidoreductase, at 60,120 to 60,809 _RS10720 Position (kb) 59 60Strain fitness (log2 ratio) -2 -1 0 1 2 3at 58.287 kb on - strand, within EX31_RS10705at 58.327 kb on + strand, within EX31_RS10705at 58.328 kb on - strand, within EX31_RS10705at 58.328 kb on - strand, within EX31_RS10705at 58.328 kb on - strand, within EX31_RS10705at 58.328 kb on - strand, within EX31_RS10705at 58.328 kb on - strand, within EX31_RS10705at 58.367 kb on - strand, within EX31_RS10705at 58.374 kb on + strand, within EX31_RS10705at 58.374 kb on + strand, within EX31_RS10705at 58.375 kb on - strand, within EX31_RS10705at 58.388 kb on + strand, within EX31_RS10705at 58.388 kb on + strand, within EX31_RS10705at 58.388 kb on + strand, within EX31_RS10705at 58.388 kb on + strand, within EX31_RS10705at 58.389 kb on - strand, within EX31_RS10705at 58.389 kb on - strand, within EX31_RS10705at 58.389 kb on - strand, within EX31_RS10705at 58.392 kb on + strand, within EX31_RS10705at 58.392 kb on + strand, within EX31_RS10705at 58.392 kb on + strand, within EX31_RS10705at 58.392 kb on + strand, within EX31_RS10705at 58.393 kb on - strand, within EX31_RS10705at 58.393 kb on - strand, within EX31_RS10705at 58.393 kb on - strand, within EX31_RS10705at 58.395 kb on + strand, within EX31_RS10705at 58.395 kb on + strand, within EX31_RS10705at 58.395 kb on + strand, within EX31_RS10705at 58.396 kb on - strand, within EX31_RS10705at 58.473 kb on - strand, within EX31_RS10705at 58.511 kb on + strand, within EX31_RS10705at 58.513 kb on + strand, within EX31_RS10705at 58.514 kb on - strand, within EX31_RS10705at 58.514 kb on - strand, within EX31_RS10705at 58.514 kb on - strand, within EX31_RS10705at 58.628 kb on + strand, within EX31_RS10705at 58.650 kb on - strand, within EX31_RS10705at 58.796 kb on + strand, within EX31_RS10705at 58.796 kb on + strand, within EX31_RS10705at 58.797 kb on - strand, within EX31_RS10705at 58.797 kb on - strand, within EX31_RS10705at 58.797 kb on - strand, within EX31_RS10705at 58.797 kb on - strand, within EX31_RS10705at 58.797 kb on - strand, within EX31_RS10705at 58.797 kb on - strand, within EX31_RS10705at 58.797 kb on - strand, within EX31_RS10705at 58.798 kb on + strand, within EX31_RS10705at 58.816 kb on - strand, within EX31_RS10705at 58.816 kb on - strand, within EX31_RS10705at 58.936 kb on - strand, within EX31_RS10705at 58.936 kb on - strand, within EX31_RS10705at 58.936 kb on - strand, within EX31_RS10705at 59.177 kb on + strandat 59.178 kb on - strandat 59.178 kb on - strandat 59.214 kb on + strandat 59.215 kb on - strandat 59.317 kb on - strand, within EX31_RS10710at 59.374 kb on + strand, within EX31_RS10710at 59.374 kb on + strand, within EX31_RS10710at 59.374 kb on + strand, within EX31_RS10710at 59.374 kb on + strand, within EX31_RS10710at 59.374 kb on + strand, within EX31_RS10710at 59.374 kb on + strand, within EX31_RS10710at 59.375 kb on - strand, within EX31_RS10710at 59.375 kb on - strand, within EX31_RS10710at 59.375 kb on - strand, within EX31_RS10710at 59.375 kb on - strand, within EX31_RS10710at 59.375 kb on - strand, within EX31_RS10710at 59.375 kb on - strand, within EX31_RS10710at 59.375 kb on - strand, within EX31_RS10710at 59.377 kb on - strand, within EX31_RS10710at 59.377 kb on - strand, within EX31_RS10710at 59.377 kb on - strand, within EX31_RS10710at 59.377 kb on - strand, within EX31_RS10710at 59.452 kb on + strand, within EX31_RS10710at 59.490 kb on + strand, within EX31_RS10710at 59.496 kb on + strand, within EX31_RS10710at 59.533 kb on + strand, within EX31_RS10710at 59.533 kb on + strand, within EX31_RS10710at 59.533 kb on + strand, within EX31_RS10710at 59.534 kb on - strand, within EX31_RS10710at 59.535 kb on + strand, within EX31_RS10710at 59.536 kb on - strand, within EX31_RS10710at 59.615 kb on - strand, within EX31_RS10710at 59.615 kb on - strand, within EX31_RS10710at 59.617 kb on + strand, within EX31_RS10710at 59.617 kb on + strand, within EX31_RS10710at 59.662 kb on + strandat 59.730 kb on + strand, within EX31_RS10715at 59.730 kb on + strand, within EX31_RS10715at 59.730 kb on + strand, within EX31_RS10715at 59.731 kb on - strand, within EX31_RS10715at 59.731 kb on - strand, within EX31_RS10715at 59.731 kb on - strand, within EX31_RS10715at 59.731 kb on - strand, within EX31_RS10715at 59.731 kb on - strand, within EX31_RS10715at 59.732 kb on + strand, within EX31_RS10715at 59.732 kb on + strand, within EX31_RS10715at 59.732 kb on + strand, within EX31_RS10715at 59.732 kb on + strand, within EX31_RS10715at 59.732 kb on + strand, within EX31_RS10715at 59.732 kb on + strand, within EX31_RS10715at 59.733 kb on - strand, within EX31_RS10715at 59.733 kb on - strand, within EX31_RS10715at 59.923 kb on + strandat 59.923 kb on + strandat 59.924 kb on - strandat 59.925 kb on + strandat 59.967 kb on + strandat 59.968 kb on - strandat 59.968 kb on - strandat 59.970 kb on + strandat 59.970 kb on + strandat 59.970 kb on + strandat 59.971 kb on - strandat 59.971 kb on - strandat 59.971 kb on - strandat 59.971 kb on - strandat 59.971 kb on - strandat 59.972 kb on + strandat 59.972 kb on + strandat 59.973 kb on - strandat 59.973 kb on - strandat 59.973 kb on - strandat 59.973 kb on - strandat 59.974 kb on + strandat 59.974 kb on + strandat 59.974 kb on + strandat 59.974 kb on + strandat 59.975 kb on - strandat 59.975 kb on - strandat 59.975 kb on - strandat 59.975 kb on - strandat 59.975 kb on - strandat 60.015 kb on + strandat 60.016 kb on - strandat 60.016 kb on - strandat 60.016 kb on - strandat 60.048 kb on + strandat 60.049 kb on - strandat 60.149 kb on + strandat 60.205 kb on + strand, within EX31_RS10720at 60.243 kb on + strand, within EX31_RS10720at 60.243 kb on + strand, within EX31_RS10720at 60.243 kb on + strand, within EX31_RS10720at 60.243 kb on + strand, within EX31_RS10720at 60.243 kb on + strand, within EX31_RS10720at 60.244 kb on - strand, within EX31_RS10720at 60.244 kb on - strand, within EX31_RS10720at 60.244 kb on - strand, within EX31_RS10720at 60.244 kb on - strand, within EX31_RS10720at 60.244 kb on - strand, within EX31_RS10720at 60.316 kb on + strand, within EX31_RS10720at 60.418 kb on - strand, within EX31_RS10720at 60.542 kb on - strand, within EX31_RS10720at 60.542 kb on - strand, within EX31_RS10720at 60.542 kb on - strand, within EX31_RS10720at 60.584 kb on + strand, within EX31_RS10720at 60.584 kb on + strand, within EX31_RS10720at 60.584 kb on + strand, within EX31_RS10720

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); RCH2 media; no shaking
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58,287 - EX31_RS10705 0.18 +0.2
58,327 + EX31_RS10705 0.22 +1.2
58,328 - EX31_RS10705 0.22 +0.6
58,328 - EX31_RS10705 0.22 +0.8
58,328 - EX31_RS10705 0.22 +1.2
58,328 - EX31_RS10705 0.22 +0.9
58,328 - EX31_RS10705 0.22 +0.6
58,367 - EX31_RS10705 0.25 +0.1
58,374 + EX31_RS10705 0.26 +0.8
58,374 + EX31_RS10705 0.26 +0.8
58,375 - EX31_RS10705 0.26 -0.4
58,388 + EX31_RS10705 0.27 -0.7
58,388 + EX31_RS10705 0.27 +1.8
58,388 + EX31_RS10705 0.27 +1.5
58,388 + EX31_RS10705 0.27 +2.0
58,389 - EX31_RS10705 0.27 +0.2
58,389 - EX31_RS10705 0.27 -0.7
58,389 - EX31_RS10705 0.27 +0.2
58,392 + EX31_RS10705 0.27 +2.9
58,392 + EX31_RS10705 0.27 +0.8
58,392 + EX31_RS10705 0.27 +0.2
58,392 + EX31_RS10705 0.27 -1.1
58,393 - EX31_RS10705 0.28 -0.5
58,393 - EX31_RS10705 0.28 -0.1
58,393 - EX31_RS10705 0.28 -2.2
58,395 + EX31_RS10705 0.28 +0.8
58,395 + EX31_RS10705 0.28 +0.2
58,395 + EX31_RS10705 0.28 -0.0
58,396 - EX31_RS10705 0.28 -1.4
58,473 - EX31_RS10705 0.35 +1.4
58,511 + EX31_RS10705 0.38 +0.6
58,513 + EX31_RS10705 0.38 +1.0
58,514 - EX31_RS10705 0.38 +0.6
58,514 - EX31_RS10705 0.38 +0.8
58,514 - EX31_RS10705 0.38 +0.2
58,628 + EX31_RS10705 0.48 -1.1
58,650 - EX31_RS10705 0.50 +1.8
58,796 + EX31_RS10705 0.63 +0.9
58,796 + EX31_RS10705 0.63 +1.2
58,797 - EX31_RS10705 0.63 -0.2
58,797 - EX31_RS10705 0.63 -0.2
58,797 - EX31_RS10705 0.63 +1.6
58,797 - EX31_RS10705 0.63 -0.8
58,797 - EX31_RS10705 0.63 -0.3
58,797 - EX31_RS10705 0.63 +0.2
58,797 - EX31_RS10705 0.63 -0.4
58,798 + EX31_RS10705 0.63 +0.6
58,816 - EX31_RS10705 0.65 +3.1
58,816 - EX31_RS10705 0.65 +1.0
58,936 - EX31_RS10705 0.75 -1.2
58,936 - EX31_RS10705 0.75 -1.4
58,936 - EX31_RS10705 0.75 +0.0
59,177 + -0.2
59,178 - +1.2
59,178 - +1.6
59,214 + -0.9
59,215 - -0.2
59,317 - EX31_RS10710 0.12 -2.1
59,374 + EX31_RS10710 0.26 +1.1
59,374 + EX31_RS10710 0.26 +1.8
59,374 + EX31_RS10710 0.26 -0.2
59,374 + EX31_RS10710 0.26 -1.2
59,374 + EX31_RS10710 0.26 +0.8
59,374 + EX31_RS10710 0.26 +1.6
59,375 - EX31_RS10710 0.26 +0.6
59,375 - EX31_RS10710 0.26 -0.5
59,375 - EX31_RS10710 0.26 +0.1
59,375 - EX31_RS10710 0.26 -0.8
59,375 - EX31_RS10710 0.26 +0.5
59,375 - EX31_RS10710 0.26 +1.3
59,375 - EX31_RS10710 0.26 +1.8
59,377 - EX31_RS10710 0.27 +0.3
59,377 - EX31_RS10710 0.27 -0.2
59,377 - EX31_RS10710 0.27 +0.8
59,377 - EX31_RS10710 0.27 -2.3
59,452 + EX31_RS10710 0.45 +0.6
59,490 + EX31_RS10710 0.54 +0.0
59,496 + EX31_RS10710 0.55 -0.6
59,533 + EX31_RS10710 0.64 +1.8
59,533 + EX31_RS10710 0.64 -0.2
59,533 + EX31_RS10710 0.64 -0.6
59,534 - EX31_RS10710 0.64 +1.3
59,535 + EX31_RS10710 0.65 +0.5
59,536 - EX31_RS10710 0.65 +1.8
59,615 - EX31_RS10710 0.84 -0.1
59,615 - EX31_RS10710 0.84 +2.3
59,617 + EX31_RS10710 0.84 +1.3
59,617 + EX31_RS10710 0.84 +1.3
59,662 + +0.2
59,730 + EX31_RS10715 0.23 -1.0
59,730 + EX31_RS10715 0.23 +2.4
59,730 + EX31_RS10715 0.23 -0.4
59,731 - EX31_RS10715 0.23 +0.2
59,731 - EX31_RS10715 0.23 -0.2
59,731 - EX31_RS10715 0.23 +0.7
59,731 - EX31_RS10715 0.23 -0.2
59,731 - EX31_RS10715 0.23 +0.7
59,732 + EX31_RS10715 0.24 -0.7
59,732 + EX31_RS10715 0.24 +0.5
59,732 + EX31_RS10715 0.24 -0.3
59,732 + EX31_RS10715 0.24 +1.5
59,732 + EX31_RS10715 0.24 +1.9
59,732 + EX31_RS10715 0.24 +0.2
59,733 - EX31_RS10715 0.24 -1.0
59,733 - EX31_RS10715 0.24 -0.2
59,923 + +0.8
59,923 + +1.7
59,924 - +0.7
59,925 + -2.0
59,967 + +0.8
59,968 - +0.3
59,968 - -0.5
59,970 + -0.2
59,970 + +1.0
59,970 + +0.2
59,971 - +0.4
59,971 - +2.1
59,971 - +1.3
59,971 - +0.6
59,971 - +0.9
59,972 + +1.9
59,972 + -0.2
59,973 - +0.0
59,973 - -0.8
59,973 - +0.3
59,973 - -1.0
59,974 + +2.0
59,974 + +1.8
59,974 + +0.0
59,974 + +1.8
59,975 - -1.0
59,975 - -0.4
59,975 - +1.0
59,975 - +0.5
59,975 - -0.2
60,015 + -1.3
60,016 - +1.9
60,016 - +0.0
60,016 - +0.9
60,048 + +0.1
60,049 - -0.6
60,149 + +0.6
60,205 + EX31_RS10720 0.12 +1.2
60,243 + EX31_RS10720 0.18 +1.0
60,243 + EX31_RS10720 0.18 -1.0
60,243 + EX31_RS10720 0.18 -1.0
60,243 + EX31_RS10720 0.18 +2.0
60,243 + EX31_RS10720 0.18 -0.5
60,244 - EX31_RS10720 0.18 -0.2
60,244 - EX31_RS10720 0.18 -0.5
60,244 - EX31_RS10720 0.18 -1.4
60,244 - EX31_RS10720 0.18 -1.3
60,244 - EX31_RS10720 0.18 +2.5
60,316 + EX31_RS10720 0.28 +1.3
60,418 - EX31_RS10720 0.43 -0.1
60,542 - EX31_RS10720 0.61 +1.8
60,542 - EX31_RS10720 0.61 +0.8
60,542 - EX31_RS10720 0.61 +1.0
60,584 + EX31_RS10720 0.67 +1.5
60,584 + EX31_RS10720 0.67 +0.8
60,584 + EX31_RS10720 0.67 +0.9

Or see this region's nucleotide sequence