Strain Fitness in Rahnella sp. WP5 around EX31_RS06755

Experiment: L-Serine (N); RCH2 media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS06745 and EX31_RS06750 overlap by 1 nucleotidesEX31_RS06750 and EX31_RS06755 are separated by 123 nucleotidesEX31_RS06755 and EX31_RS06760 are separated by 57 nucleotides EX31_RS06745: EX31_RS06745 - ABC transporter permease, at 134,156 to 135,037 _RS06745 EX31_RS06750: EX31_RS06750 - ABC transporter ATP-binding protein, at 135,037 to 135,822 _RS06750 EX31_RS06755: EX31_RS06755 - histidine ammonia-lyase, at 135,946 to 137,496 _RS06755 EX31_RS06760: EX31_RS06760 - urocanate hydratase, at 137,554 to 139,242 _RS06760 Position (kb) 135 136 137 138Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 134.953 kb on + strandat 135.076 kb on - strandat 135.180 kb on + strand, within EX31_RS06750at 135.181 kb on - strand, within EX31_RS06750at 135.298 kb on + strand, within EX31_RS06750at 135.299 kb on - strand, within EX31_RS06750at 135.299 kb on - strand, within EX31_RS06750at 135.300 kb on + strand, within EX31_RS06750at 135.301 kb on - strand, within EX31_RS06750at 135.394 kb on + strand, within EX31_RS06750at 135.395 kb on - strand, within EX31_RS06750at 135.399 kb on + strand, within EX31_RS06750at 135.400 kb on - strand, within EX31_RS06750at 135.402 kb on + strand, within EX31_RS06750at 135.402 kb on + strand, within EX31_RS06750at 135.403 kb on - strand, within EX31_RS06750at 135.405 kb on + strand, within EX31_RS06750at 135.405 kb on + strand, within EX31_RS06750at 135.651 kb on + strand, within EX31_RS06750at 135.654 kb on + strand, within EX31_RS06750at 135.655 kb on - strand, within EX31_RS06750at 135.730 kb on + strand, within EX31_RS06750at 135.730 kb on + strand, within EX31_RS06750at 135.850 kb on - strandat 135.856 kb on + strandat 135.857 kb on - strandat 135.857 kb on - strandat 135.869 kb on + strandat 135.869 kb on + strandat 135.876 kb on + strandat 135.876 kb on + strandat 135.877 kb on - strandat 135.930 kb on + strandat 135.932 kb on + strandat 136.126 kb on + strand, within EX31_RS06755at 136.406 kb on + strand, within EX31_RS06755at 136.406 kb on + strand, within EX31_RS06755at 136.820 kb on + strand, within EX31_RS06755at 137.109 kb on + strand, within EX31_RS06755at 137.216 kb on + strand, within EX31_RS06755at 137.216 kb on + strand, within EX31_RS06755at 137.230 kb on + strand, within EX31_RS06755at 137.230 kb on + strand, within EX31_RS06755at 137.231 kb on - strand, within EX31_RS06755at 137.263 kb on - strand, within EX31_RS06755at 137.772 kb on - strand, within EX31_RS06760at 137.971 kb on + strand, within EX31_RS06760at 138.004 kb on + strand, within EX31_RS06760at 138.004 kb on + strand, within EX31_RS06760at 138.004 kb on + strand, within EX31_RS06760at 138.005 kb on - strand, within EX31_RS06760at 138.005 kb on - strand, within EX31_RS06760at 138.037 kb on + strand, within EX31_RS06760at 138.037 kb on + strand, within EX31_RS06760at 138.038 kb on - strand, within EX31_RS06760at 138.038 kb on - strand, within EX31_RS06760at 138.135 kb on - strand, within EX31_RS06760at 138.197 kb on - strand, within EX31_RS06760at 138.388 kb on + strand, within EX31_RS06760

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); RCH2 media; no shaking
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134,953 + +1.9
135,076 - -0.4
135,180 + EX31_RS06750 0.18 +1.8
135,181 - EX31_RS06750 0.18 +1.1
135,298 + EX31_RS06750 0.33 -0.6
135,299 - EX31_RS06750 0.33 -0.1
135,299 - EX31_RS06750 0.33 -0.4
135,300 + EX31_RS06750 0.33 -0.4
135,301 - EX31_RS06750 0.34 -1.2
135,394 + EX31_RS06750 0.45 +0.9
135,395 - EX31_RS06750 0.46 +0.0
135,399 + EX31_RS06750 0.46 -1.4
135,400 - EX31_RS06750 0.46 +0.6
135,402 + EX31_RS06750 0.46 -0.2
135,402 + EX31_RS06750 0.46 +1.6
135,403 - EX31_RS06750 0.47 +1.0
135,405 + EX31_RS06750 0.47 +0.6
135,405 + EX31_RS06750 0.47 +4.6
135,651 + EX31_RS06750 0.78 +0.0
135,654 + EX31_RS06750 0.78 +1.4
135,655 - EX31_RS06750 0.79 +1.6
135,730 + EX31_RS06750 0.88 -1.0
135,730 + EX31_RS06750 0.88 -0.6
135,850 - +2.0
135,856 + -3.1
135,857 - +0.3
135,857 - +1.9
135,869 + -0.7
135,869 + +1.6
135,876 + +1.6
135,876 + +0.6
135,877 - -0.4
135,930 + -1.6
135,932 + +0.7
136,126 + EX31_RS06755 0.12 -1.0
136,406 + EX31_RS06755 0.30 -2.6
136,406 + EX31_RS06755 0.30 +0.4
136,820 + EX31_RS06755 0.56 +1.6
137,109 + EX31_RS06755 0.75 -2.0
137,216 + EX31_RS06755 0.82 +1.2
137,216 + EX31_RS06755 0.82 +0.2
137,230 + EX31_RS06755 0.83 +2.6
137,230 + EX31_RS06755 0.83 -2.0
137,231 - EX31_RS06755 0.83 -1.0
137,263 - EX31_RS06755 0.85 -1.5
137,772 - EX31_RS06760 0.13 -1.2
137,971 + EX31_RS06760 0.25 +0.6
138,004 + EX31_RS06760 0.27 -0.1
138,004 + EX31_RS06760 0.27 -0.2
138,004 + EX31_RS06760 0.27 +1.7
138,005 - EX31_RS06760 0.27 +1.1
138,005 - EX31_RS06760 0.27 +0.6
138,037 + EX31_RS06760 0.29 -2.6
138,037 + EX31_RS06760 0.29 +2.1
138,038 - EX31_RS06760 0.29 +1.4
138,038 - EX31_RS06760 0.29 -1.0
138,135 - EX31_RS06760 0.34 -0.0
138,197 - EX31_RS06760 0.38 +1.6
138,388 + EX31_RS06760 0.49 -1.1

Or see this region's nucleotide sequence