Strain Fitness in Rahnella sp. WP5 around EX31_RS00240

Experiment: L-Serine (N); RCH2 media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS00235 and EX31_RS00240 are separated by 68 nucleotidesEX31_RS00240 and EX31_RS00245 are separated by 401 nucleotides EX31_RS00235: EX31_RS00235 - sugar ABC transporter ATP-binding protein, at 47,733 to 49,247 _RS00235 EX31_RS00240: EX31_RS00240 - rhamnose ABC transporter substrate-binding protein, at 49,316 to 50,308 _RS00240 EX31_RS00245: EX31_RS00245 - HTH-type transcriptional activator RhaS, at 50,710 to 51,534 _RS00245 Position (kb) 49 50 51Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 48.337 kb on - strand, within EX31_RS00235at 48.520 kb on - strand, within EX31_RS00235at 48.577 kb on + strand, within EX31_RS00235at 48.577 kb on + strand, within EX31_RS00235at 48.577 kb on + strand, within EX31_RS00235at 48.577 kb on + strand, within EX31_RS00235at 48.578 kb on - strand, within EX31_RS00235at 48.578 kb on - strand, within EX31_RS00235at 48.578 kb on - strand, within EX31_RS00235at 48.578 kb on - strand, within EX31_RS00235at 48.578 kb on - strand, within EX31_RS00235at 48.601 kb on + strand, within EX31_RS00235at 48.601 kb on + strand, within EX31_RS00235at 48.601 kb on + strand, within EX31_RS00235at 48.601 kb on + strand, within EX31_RS00235at 48.602 kb on - strand, within EX31_RS00235at 48.602 kb on - strand, within EX31_RS00235at 48.602 kb on - strand, within EX31_RS00235at 48.602 kb on - strand, within EX31_RS00235at 48.605 kb on - strand, within EX31_RS00235at 48.807 kb on + strand, within EX31_RS00235at 48.808 kb on - strand, within EX31_RS00235at 48.808 kb on - strand, within EX31_RS00235at 48.808 kb on - strand, within EX31_RS00235at 48.840 kb on + strand, within EX31_RS00235at 48.841 kb on - strand, within EX31_RS00235at 48.841 kb on - strand, within EX31_RS00235at 48.938 kb on + strand, within EX31_RS00235at 49.046 kb on + strand, within EX31_RS00235at 49.046 kb on + strand, within EX31_RS00235at 49.046 kb on + strand, within EX31_RS00235at 49.047 kb on - strand, within EX31_RS00235at 49.047 kb on - strand, within EX31_RS00235at 49.140 kb on + strandat 49.173 kb on - strandat 49.176 kb on + strandat 49.177 kb on - strandat 49.272 kb on - strandat 49.272 kb on - strandat 49.272 kb on - strandat 49.272 kb on - strandat 49.336 kb on + strandat 49.473 kb on + strand, within EX31_RS00240at 49.473 kb on + strand, within EX31_RS00240at 49.473 kb on + strand, within EX31_RS00240at 49.474 kb on - strand, within EX31_RS00240at 49.474 kb on - strand, within EX31_RS00240at 49.474 kb on - strand, within EX31_RS00240at 49.485 kb on + strand, within EX31_RS00240at 49.581 kb on + strand, within EX31_RS00240at 49.581 kb on + strand, within EX31_RS00240at 49.581 kb on + strand, within EX31_RS00240at 49.582 kb on - strand, within EX31_RS00240at 49.582 kb on - strand, within EX31_RS00240at 49.582 kb on - strand, within EX31_RS00240at 49.582 kb on - strand, within EX31_RS00240at 49.582 kb on - strand, within EX31_RS00240at 49.582 kb on - strand, within EX31_RS00240at 49.582 kb on - strand, within EX31_RS00240at 49.582 kb on - strand, within EX31_RS00240at 49.675 kb on - strand, within EX31_RS00240at 49.839 kb on - strand, within EX31_RS00240at 49.839 kb on - strand, within EX31_RS00240at 49.927 kb on + strand, within EX31_RS00240at 49.927 kb on + strand, within EX31_RS00240at 49.928 kb on - strand, within EX31_RS00240at 49.981 kb on + strand, within EX31_RS00240at 49.982 kb on - strand, within EX31_RS00240at 50.090 kb on + strand, within EX31_RS00240at 50.091 kb on - strand, within EX31_RS00240at 50.128 kb on - strand, within EX31_RS00240at 50.128 kb on - strand, within EX31_RS00240at 50.156 kb on - strand, within EX31_RS00240at 50.201 kb on - strand, within EX31_RS00240at 50.292 kb on - strandat 50.301 kb on - strandat 50.315 kb on + strandat 50.324 kb on + strandat 50.324 kb on + strandat 50.387 kb on + strandat 50.387 kb on + strandat 50.387 kb on + strandat 50.440 kb on - strandat 50.557 kb on + strandat 50.564 kb on + strandat 50.564 kb on + strandat 50.675 kb on + strandat 50.675 kb on + strandat 50.680 kb on + strandat 50.680 kb on + strandat 50.683 kb on + strandat 50.689 kb on - strandat 50.727 kb on + strandat 50.968 kb on + strand, within EX31_RS00245at 51.096 kb on + strand, within EX31_RS00245at 51.096 kb on + strand, within EX31_RS00245at 51.155 kb on + strand, within EX31_RS00245at 51.156 kb on - strand, within EX31_RS00245at 51.156 kb on - strand, within EX31_RS00245at 51.158 kb on - strand, within EX31_RS00245at 51.162 kb on + strand, within EX31_RS00245at 51.173 kb on + strand, within EX31_RS00245at 51.173 kb on + strand, within EX31_RS00245at 51.174 kb on - strand, within EX31_RS00245at 51.176 kb on + strand, within EX31_RS00245at 51.262 kb on + strand, within EX31_RS00245at 51.263 kb on - strand, within EX31_RS00245at 51.263 kb on - strand, within EX31_RS00245

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); RCH2 media; no shaking
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48,337 - EX31_RS00235 0.40 +0.9
48,520 - EX31_RS00235 0.52 +1.7
48,577 + EX31_RS00235 0.56 +2.2
48,577 + EX31_RS00235 0.56 -0.7
48,577 + EX31_RS00235 0.56 -0.1
48,577 + EX31_RS00235 0.56 -0.3
48,578 - EX31_RS00235 0.56 -0.1
48,578 - EX31_RS00235 0.56 -1.4
48,578 - EX31_RS00235 0.56 +0.3
48,578 - EX31_RS00235 0.56 +0.1
48,578 - EX31_RS00235 0.56 -0.5
48,601 + EX31_RS00235 0.57 +0.3
48,601 + EX31_RS00235 0.57 +1.0
48,601 + EX31_RS00235 0.57 +0.4
48,601 + EX31_RS00235 0.57 +0.8
48,602 - EX31_RS00235 0.57 +0.1
48,602 - EX31_RS00235 0.57 +0.2
48,602 - EX31_RS00235 0.57 -0.7
48,602 - EX31_RS00235 0.57 +0.0
48,605 - EX31_RS00235 0.58 -1.9
48,807 + EX31_RS00235 0.71 -0.6
48,808 - EX31_RS00235 0.71 +0.4
48,808 - EX31_RS00235 0.71 +0.9
48,808 - EX31_RS00235 0.71 +0.3
48,840 + EX31_RS00235 0.73 -0.0
48,841 - EX31_RS00235 0.73 +0.1
48,841 - EX31_RS00235 0.73 +0.4
48,938 + EX31_RS00235 0.80 -2.1
49,046 + EX31_RS00235 0.87 +1.3
49,046 + EX31_RS00235 0.87 +0.2
49,046 + EX31_RS00235 0.87 -3.0
49,047 - EX31_RS00235 0.87 +1.4
49,047 - EX31_RS00235 0.87 -0.1
49,140 + +0.2
49,173 - -1.0
49,176 + -0.7
49,177 - +0.2
49,272 - -0.2
49,272 - -0.6
49,272 - -2.5
49,272 - -0.9
49,336 + +1.0
49,473 + EX31_RS00240 0.16 +0.6
49,473 + EX31_RS00240 0.16 +1.4
49,473 + EX31_RS00240 0.16 +1.8
49,474 - EX31_RS00240 0.16 -0.2
49,474 - EX31_RS00240 0.16 +0.2
49,474 - EX31_RS00240 0.16 +0.3
49,485 + EX31_RS00240 0.17 +0.8
49,581 + EX31_RS00240 0.27 +0.6
49,581 + EX31_RS00240 0.27 +2.0
49,581 + EX31_RS00240 0.27 +0.6
49,582 - EX31_RS00240 0.27 +0.7
49,582 - EX31_RS00240 0.27 -0.1
49,582 - EX31_RS00240 0.27 +0.7
49,582 - EX31_RS00240 0.27 -0.1
49,582 - EX31_RS00240 0.27 +0.6
49,582 - EX31_RS00240 0.27 -0.4
49,582 - EX31_RS00240 0.27 -0.5
49,582 - EX31_RS00240 0.27 +0.4
49,675 - EX31_RS00240 0.36 +0.3
49,839 - EX31_RS00240 0.53 +1.6
49,839 - EX31_RS00240 0.53 -1.8
49,927 + EX31_RS00240 0.62 -0.2
49,927 + EX31_RS00240 0.62 +0.5
49,928 - EX31_RS00240 0.62 -0.8
49,981 + EX31_RS00240 0.67 +0.5
49,982 - EX31_RS00240 0.67 -0.1
50,090 + EX31_RS00240 0.78 -0.5
50,091 - EX31_RS00240 0.78 +1.0
50,128 - EX31_RS00240 0.82 +0.9
50,128 - EX31_RS00240 0.82 -0.1
50,156 - EX31_RS00240 0.85 +1.0
50,201 - EX31_RS00240 0.89 -0.4
50,292 - +0.8
50,301 - -0.4
50,315 + -0.1
50,324 + +0.2
50,324 + +0.6
50,387 + +1.2
50,387 + +0.6
50,387 + -0.6
50,440 - +1.1
50,557 + +0.4
50,564 + -1.0
50,564 + -0.0
50,675 + +0.5
50,675 + +0.4
50,680 + +0.6
50,680 + -0.1
50,683 + +0.2
50,689 - +0.8
50,727 + -0.1
50,968 + EX31_RS00245 0.31 +0.7
51,096 + EX31_RS00245 0.47 +0.7
51,096 + EX31_RS00245 0.47 +0.7
51,155 + EX31_RS00245 0.54 +0.0
51,156 - EX31_RS00245 0.54 +2.2
51,156 - EX31_RS00245 0.54 +1.3
51,158 - EX31_RS00245 0.54 -0.3
51,162 + EX31_RS00245 0.55 -1.1
51,173 + EX31_RS00245 0.56 +0.2
51,173 + EX31_RS00245 0.56 -0.9
51,174 - EX31_RS00245 0.56 -0.1
51,176 + EX31_RS00245 0.56 +1.5
51,262 + EX31_RS00245 0.67 +0.5
51,263 - EX31_RS00245 0.67 +1.1
51,263 - EX31_RS00245 0.67 +0.4

Or see this region's nucleotide sequence