Experiment: Putrescine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00796 and CCNA_03940 are separated by 109 nucleotides CCNA_03940 and CCNA_00798 are separated by 8 nucleotides
CCNA_00796: CCNA_00796 - oxygen sensory histidine kinase FixL, at 859,581 to 861,068
_00796
CCNA_03940: CCNA_03940 - hypothetical protein, at 861,178 to 861,285
_03940
CCNA_00798: CCNA_00798 - ABC transporter, ATP-binding protein cydC, at 861,294 to 862,892
_00798
Position (kb) 861
862 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 860.257 kb on - strand, within CCNA_00796 at 860.276 kb on - strand, within CCNA_00796 at 860.277 kb on - strand, within CCNA_00796 at 860.318 kb on - strand, within CCNA_00796 at 860.359 kb on - strand, within CCNA_00796 at 860.474 kb on - strand, within CCNA_00796 at 860.490 kb on + strand, within CCNA_00796 at 860.490 kb on + strand, within CCNA_00796 at 860.629 kb on - strand, within CCNA_00796 at 860.687 kb on - strand, within CCNA_00796 at 860.708 kb on - strand, within CCNA_00796 at 860.756 kb on - strand, within CCNA_00796 at 860.759 kb on + strand, within CCNA_00796 at 860.761 kb on - strand, within CCNA_00796 at 860.797 kb on + strand, within CCNA_00796 at 860.805 kb on - strand, within CCNA_00796 at 860.805 kb on - strand, within CCNA_00796 at 860.805 kb on - strand, within CCNA_00796 at 860.836 kb on - strand, within CCNA_00796 at 860.836 kb on - strand, within CCNA_00796 at 860.841 kb on - strand, within CCNA_00796 at 860.850 kb on + strand, within CCNA_00796 at 860.858 kb on - strand, within CCNA_00796 at 860.870 kb on + strand, within CCNA_00796 at 860.870 kb on + strand, within CCNA_00796 at 860.870 kb on + strand, within CCNA_00796 at 860.876 kb on + strand, within CCNA_00796 at 860.878 kb on - strand, within CCNA_00796 at 860.878 kb on - strand, within CCNA_00796 at 860.878 kb on - strand, within CCNA_00796 at 860.894 kb on - strand, within CCNA_00796 at 860.901 kb on + strand, within CCNA_00796 at 860.901 kb on + strand, within CCNA_00796 at 860.904 kb on - strand, within CCNA_00796 at 860.909 kb on - strand, within CCNA_00796 at 860.909 kb on - strand, within CCNA_00796 at 860.932 kb on - strand at 860.967 kb on - strand at 861.028 kb on + strand at 861.028 kb on + strand at 861.042 kb on + strand at 861.121 kb on - strand at 861.121 kb on - strand at 861.124 kb on + strand at 861.124 kb on + strand at 861.131 kb on - strand at 861.132 kb on - strand at 861.132 kb on - strand at 861.132 kb on - strand at 861.132 kb on - strand at 861.132 kb on - strand at 861.137 kb on + strand at 861.137 kb on + strand at 861.147 kb on + strand at 861.153 kb on + strand at 861.153 kb on + strand at 861.250 kb on - strand, within CCNA_03940 at 861.252 kb on + strand, within CCNA_03940 at 861.260 kb on - strand, within CCNA_03940 at 861.268 kb on - strand, within CCNA_03940 at 861.309 kb on - strand at 861.315 kb on + strand at 861.361 kb on - strand at 861.405 kb on + strand at 861.474 kb on + strand, within CCNA_00798 at 861.482 kb on - strand, within CCNA_00798 at 861.482 kb on - strand, within CCNA_00798 at 861.482 kb on - strand, within CCNA_00798 at 861.505 kb on + strand, within CCNA_00798 at 861.529 kb on + strand, within CCNA_00798 at 861.534 kb on + strand, within CCNA_00798 at 861.539 kb on + strand, within CCNA_00798 at 861.540 kb on + strand, within CCNA_00798 at 861.542 kb on - strand, within CCNA_00798 at 861.602 kb on - strand, within CCNA_00798 at 861.602 kb on - strand, within CCNA_00798 at 861.602 kb on - strand, within CCNA_00798 at 861.616 kb on + strand, within CCNA_00798 at 861.655 kb on + strand, within CCNA_00798 at 861.655 kb on + strand, within CCNA_00798 at 861.655 kb on + strand, within CCNA_00798 at 861.663 kb on - strand, within CCNA_00798 at 861.764 kb on + strand, within CCNA_00798 at 861.764 kb on + strand, within CCNA_00798 at 861.788 kb on + strand, within CCNA_00798 at 861.796 kb on - strand, within CCNA_00798 at 861.796 kb on - strand, within CCNA_00798 at 861.825 kb on + strand, within CCNA_00798 at 861.840 kb on - strand, within CCNA_00798 at 861.841 kb on - strand, within CCNA_00798 at 861.866 kb on + strand, within CCNA_00798 at 861.874 kb on - strand, within CCNA_00798 at 861.874 kb on - strand, within CCNA_00798 at 861.874 kb on - strand, within CCNA_00798 at 861.889 kb on - strand, within CCNA_00798 at 861.889 kb on - strand, within CCNA_00798 at 861.889 kb on - strand, within CCNA_00798 at 861.891 kb on - strand, within CCNA_00798 at 861.891 kb on - strand, within CCNA_00798 at 861.891 kb on - strand, within CCNA_00798 at 861.919 kb on + strand, within CCNA_00798 at 861.919 kb on + strand, within CCNA_00798 at 861.919 kb on + strand, within CCNA_00798 at 861.927 kb on - strand, within CCNA_00798 at 861.941 kb on - strand, within CCNA_00798 at 861.945 kb on + strand, within CCNA_00798 at 861.945 kb on + strand, within CCNA_00798 at 861.951 kb on - strand, within CCNA_00798 at 861.953 kb on - strand, within CCNA_00798 at 862.013 kb on + strand, within CCNA_00798 at 862.013 kb on - strand, within CCNA_00798 at 862.058 kb on - strand, within CCNA_00798 at 862.130 kb on + strand, within CCNA_00798 at 862.131 kb on + strand, within CCNA_00798 at 862.133 kb on - strand, within CCNA_00798 at 862.177 kb on - strand, within CCNA_00798 at 862.214 kb on - strand, within CCNA_00798 at 862.228 kb on - strand, within CCNA_00798 at 862.277 kb on - strand, within CCNA_00798
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine (N) remove 860,257 - CCNA_00796 0.45 -1.4 860,276 - CCNA_00796 0.47 -2.2 860,277 - CCNA_00796 0.47 -2.6 860,318 - CCNA_00796 0.50 -2.1 860,359 - CCNA_00796 0.52 -2.3 860,474 - CCNA_00796 0.60 -1.4 860,490 + CCNA_00796 0.61 -2.6 860,490 + CCNA_00796 0.61 -2.7 860,629 - CCNA_00796 0.70 -2.4 860,687 - CCNA_00796 0.74 -0.4 860,708 - CCNA_00796 0.76 -1.9 860,756 - CCNA_00796 0.79 -0.2 860,759 + CCNA_00796 0.79 -3.2 860,761 - CCNA_00796 0.79 -2.4 860,797 + CCNA_00796 0.82 -1.0 860,805 - CCNA_00796 0.82 -0.1 860,805 - CCNA_00796 0.82 +1.0 860,805 - CCNA_00796 0.82 -3.0 860,836 - CCNA_00796 0.84 -1.8 860,836 - CCNA_00796 0.84 -1.1 860,841 - CCNA_00796 0.85 -1.7 860,850 + CCNA_00796 0.85 -1.7 860,858 - CCNA_00796 0.86 -2.0 860,870 + CCNA_00796 0.87 -0.6 860,870 + CCNA_00796 0.87 -2.4 860,870 + CCNA_00796 0.87 -2.5 860,876 + CCNA_00796 0.87 -1.5 860,878 - CCNA_00796 0.87 -2.8 860,878 - CCNA_00796 0.87 -1.1 860,878 - CCNA_00796 0.87 -1.9 860,894 - CCNA_00796 0.88 -2.8 860,901 + CCNA_00796 0.89 -2.8 860,901 + CCNA_00796 0.89 -2.6 860,904 - CCNA_00796 0.89 -1.7 860,909 - CCNA_00796 0.89 -0.9 860,909 - CCNA_00796 0.89 -1.0 860,932 - +0.1 860,967 - -1.2 861,028 + -0.2 861,028 + -1.2 861,042 + -0.1 861,121 - -0.6 861,121 - +1.1 861,124 + +0.8 861,124 + +1.4 861,131 - -0.8 861,132 - -0.6 861,132 - +1.3 861,132 - +0.3 861,132 - +0.0 861,132 - +1.0 861,137 + -0.9 861,137 + +0.8 861,147 + +1.2 861,153 + -0.3 861,153 + +0.3 861,250 - CCNA_03940 0.67 -2.5 861,252 + CCNA_03940 0.69 +1.3 861,260 - CCNA_03940 0.76 -0.1 861,268 - CCNA_03940 0.83 +2.4 861,309 - -0.9 861,315 + -0.2 861,361 - -0.2 861,405 + -1.2 861,474 + CCNA_00798 0.11 -1.1 861,482 - CCNA_00798 0.12 -0.7 861,482 - CCNA_00798 0.12 -1.9 861,482 - CCNA_00798 0.12 -0.2 861,505 + CCNA_00798 0.13 -1.6 861,529 + CCNA_00798 0.15 -1.7 861,534 + CCNA_00798 0.15 -1.0 861,539 + CCNA_00798 0.15 -1.9 861,540 + CCNA_00798 0.15 -0.2 861,542 - CCNA_00798 0.16 -0.2 861,602 - CCNA_00798 0.19 -1.1 861,602 - CCNA_00798 0.19 -2.1 861,602 - CCNA_00798 0.19 -1.2 861,616 + CCNA_00798 0.20 -0.1 861,655 + CCNA_00798 0.23 -0.7 861,655 + CCNA_00798 0.23 -0.2 861,655 + CCNA_00798 0.23 -1.4 861,663 - CCNA_00798 0.23 -1.1 861,764 + CCNA_00798 0.29 -2.7 861,764 + CCNA_00798 0.29 -1.5 861,788 + CCNA_00798 0.31 -0.4 861,796 - CCNA_00798 0.31 -1.4 861,796 - CCNA_00798 0.31 -2.5 861,825 + CCNA_00798 0.33 -2.5 861,840 - CCNA_00798 0.34 -1.4 861,841 - CCNA_00798 0.34 -0.6 861,866 + CCNA_00798 0.36 -1.2 861,874 - CCNA_00798 0.36 -2.5 861,874 - CCNA_00798 0.36 -0.6 861,874 - CCNA_00798 0.36 -2.8 861,889 - CCNA_00798 0.37 -1.7 861,889 - CCNA_00798 0.37 -1.9 861,889 - CCNA_00798 0.37 -1.8 861,891 - CCNA_00798 0.37 +1.0 861,891 - CCNA_00798 0.37 -0.9 861,891 - CCNA_00798 0.37 +1.7 861,919 + CCNA_00798 0.39 -2.7 861,919 + CCNA_00798 0.39 -1.9 861,919 + CCNA_00798 0.39 -1.4 861,927 - CCNA_00798 0.40 +1.4 861,941 - CCNA_00798 0.40 -3.0 861,945 + CCNA_00798 0.41 -2.3 861,945 + CCNA_00798 0.41 +0.3 861,951 - CCNA_00798 0.41 +0.9 861,953 - CCNA_00798 0.41 -0.4 862,013 + CCNA_00798 0.45 -0.4 862,013 - CCNA_00798 0.45 -0.2 862,058 - CCNA_00798 0.48 -1.7 862,130 + CCNA_00798 0.52 -1.8 862,131 + CCNA_00798 0.52 -1.9 862,133 - CCNA_00798 0.52 -0.7 862,177 - CCNA_00798 0.55 -1.3 862,214 - CCNA_00798 0.58 -1.0 862,228 - CCNA_00798 0.58 -1.1 862,277 - CCNA_00798 0.61 -1.6
Or see this region's nucleotide sequence