Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03656

Experiment: Putrescine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03655 and CCNA_03656 are separated by 9 nucleotidesCCNA_03656 and CCNA_03657 are separated by 12 nucleotidesCCNA_03657 and CCNA_03658 are separated by 12 nucleotides CCNA_03655: CCNA_03655 - folylpolyglutamate synthase/dihydrofolate synthase, at 3,816,172 to 3,817,485 _03655 CCNA_03656: CCNA_03656 - acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, at 3,817,495 to 3,818,418 _03656 CCNA_03657: CCNA_03657 - tryptophan synthase alpha chain, at 3,818,431 to 3,819,258 _03657 CCNA_03658: CCNA_03658 - tryptophan synthase beta chain, at 3,819,271 to 3,820,491 _03658 Position (kb) 3817 3818 3819Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 3817.444 kb on - strandat 3817.444 kb on - strandat 3817.444 kb on - strandat 3817.492 kb on + strandat 3817.492 kb on + strandat 3817.492 kb on + strandat 3817.492 kb on + strandat 3817.492 kb on + strandat 3817.500 kb on - strandat 3817.500 kb on - strandat 3817.500 kb on - strandat 3817.500 kb on - strandat 3817.500 kb on - strandat 3817.500 kb on - strandat 3817.500 kb on - strandat 3818.422 kb on - strandat 3818.429 kb on - strandat 3818.436 kb on - strandat 3818.463 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.480 kb on - strandat 3818.542 kb on + strand, within CCNA_03657at 3818.550 kb on - strand, within CCNA_03657at 3818.646 kb on - strand, within CCNA_03657at 3818.659 kb on + strand, within CCNA_03657at 3818.671 kb on + strand, within CCNA_03657at 3818.744 kb on - strand, within CCNA_03657at 3818.790 kb on - strandat 3818.893 kb on - strand, within CCNA_03657at 3818.926 kb on - strand, within CCNA_03657at 3818.936 kb on + strand, within CCNA_03657at 3818.945 kb on + strand, within CCNA_03657at 3818.953 kb on + strand, within CCNA_03657at 3818.958 kb on - strand, within CCNA_03657at 3819.011 kb on - strand, within CCNA_03657at 3819.019 kb on - strand, within CCNA_03657at 3819.078 kb on - strand, within CCNA_03657at 3819.092 kb on - strand, within CCNA_03657at 3819.108 kb on - strand, within CCNA_03657at 3819.255 kb on - strandat 3819.276 kb on - strandat 3819.308 kb on - strandat 3819.347 kb on + strandat 3819.355 kb on - strandat 3819.361 kb on - strandat 3819.371 kb on - strandat 3819.391 kb on - strandat 3819.402 kb on - strand, within CCNA_03658

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (N)
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3,817,444 - +1.5
3,817,444 - +1.4
3,817,444 - -1.2
3,817,492 + -2.5
3,817,492 + -1.3
3,817,492 + -1.4
3,817,492 + -1.6
3,817,492 + -1.2
3,817,500 - +2.0
3,817,500 - +1.9
3,817,500 - +1.4
3,817,500 - +2.7
3,817,500 - +1.8
3,817,500 - +1.7
3,817,500 - +1.2
3,818,422 - +2.4
3,818,429 - +0.0
3,818,436 - +1.3
3,818,463 - -4.8
3,818,470 - -1.9
3,818,470 - -0.8
3,818,470 - -4.4
3,818,470 - -1.6
3,818,470 - -1.2
3,818,470 - -1.8
3,818,470 - -2.1
3,818,470 - -1.4
3,818,470 - -1.8
3,818,470 - -2.1
3,818,470 - +0.4
3,818,470 - +0.2
3,818,470 - -3.4
3,818,470 - -0.7
3,818,470 - -2.5
3,818,470 - -2.5
3,818,470 - -3.0
3,818,470 - +3.6
3,818,470 - -2.5
3,818,470 - +2.9
3,818,470 - -2.0
3,818,480 - -3.9
3,818,542 + CCNA_03657 0.13 -1.2
3,818,550 - CCNA_03657 0.14 -2.4
3,818,646 - CCNA_03657 0.26 -3.1
3,818,659 + CCNA_03657 0.28 -1.8
3,818,671 + CCNA_03657 0.29 -1.8
3,818,744 - CCNA_03657 0.38 -3.5
3,818,790 - +0.2
3,818,893 - CCNA_03657 0.56 -2.2
3,818,926 - CCNA_03657 0.60 -4.6
3,818,936 + CCNA_03657 0.61 -2.3
3,818,945 + CCNA_03657 0.62 +0.2
3,818,953 + CCNA_03657 0.63 -1.5
3,818,958 - CCNA_03657 0.64 -2.9
3,819,011 - CCNA_03657 0.70 -1.2
3,819,019 - CCNA_03657 0.71 -2.8
3,819,078 - CCNA_03657 0.78 -4.9
3,819,092 - CCNA_03657 0.80 -3.4
3,819,108 - CCNA_03657 0.82 -3.3
3,819,255 - -1.7
3,819,276 - -2.6
3,819,308 - +0.2
3,819,347 + -1.8
3,819,355 - -4.5
3,819,361 - -3.1
3,819,371 - -3.4
3,819,391 - -1.9
3,819,402 - CCNA_03658 0.11 -4.2

Or see this region's nucleotide sequence