Experiment: Putrescine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01897 and CCNA_01898 overlap by 4 nucleotides CCNA_01898 and CCNA_01899 overlap by 4 nucleotides
CCNA_01897: CCNA_01897 - metal-dependent hydrolase, at 2,040,047 to 2,040,853
_01897
CCNA_01898: CCNA_01898 - Mg-dependent Dnase TatD, at 2,040,850 to 2,041,638
_01898
CCNA_01899: CCNA_01899 - DNA polymerase III, delta, at 2,041,635 to 2,042,645
_01899
Position (kb)
2040
2041
2042 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2039.902 kb on + strand at 2039.904 kb on + strand at 2039.910 kb on - strand at 2039.922 kb on + strand at 2039.922 kb on + strand at 2039.923 kb on - strand at 2039.930 kb on - strand at 2039.930 kb on - strand at 2039.968 kb on - strand at 2040.019 kb on - strand at 2040.058 kb on + strand at 2040.140 kb on + strand, within CCNA_01897 at 2040.150 kb on + strand, within CCNA_01897 at 2040.174 kb on + strand, within CCNA_01897 at 2040.219 kb on + strand, within CCNA_01897 at 2040.227 kb on - strand, within CCNA_01897 at 2040.227 kb on - strand, within CCNA_01897 at 2040.277 kb on + strand, within CCNA_01897 at 2040.280 kb on + strand, within CCNA_01897 at 2040.303 kb on + strand, within CCNA_01897 at 2040.303 kb on + strand, within CCNA_01897 at 2040.303 kb on + strand, within CCNA_01897 at 2040.311 kb on - strand, within CCNA_01897 at 2040.386 kb on + strand, within CCNA_01897 at 2040.392 kb on + strand, within CCNA_01897 at 2040.480 kb on - strand, within CCNA_01897 at 2040.480 kb on - strand, within CCNA_01897 at 2040.498 kb on - strand, within CCNA_01897 at 2040.508 kb on - strand, within CCNA_01897 at 2040.581 kb on + strand, within CCNA_01897 at 2040.603 kb on - strand, within CCNA_01897 at 2040.608 kb on - strand, within CCNA_01897 at 2040.626 kb on + strand, within CCNA_01897 at 2040.626 kb on + strand, within CCNA_01897 at 2040.644 kb on + strand, within CCNA_01897 at 2040.645 kb on - strand, within CCNA_01897 at 2040.677 kb on - strand, within CCNA_01897 at 2040.709 kb on + strand, within CCNA_01897 at 2040.714 kb on + strand, within CCNA_01897 at 2040.737 kb on + strand at 2040.752 kb on - strand, within CCNA_01897 at 2040.766 kb on + strand, within CCNA_01897 at 2040.766 kb on + strand, within CCNA_01897 at 2040.777 kb on + strand at 2040.782 kb on + strand at 2040.846 kb on + strand at 2040.859 kb on - strand at 2040.906 kb on - strand at 2040.911 kb on - strand at 2040.927 kb on - strand at 2041.016 kb on - strand, within CCNA_01898 at 2041.067 kb on - strand, within CCNA_01898 at 2041.099 kb on + strand, within CCNA_01898 at 2041.107 kb on - strand, within CCNA_01898 at 2041.107 kb on - strand, within CCNA_01898 at 2041.154 kb on - strand, within CCNA_01898 at 2041.160 kb on + strand, within CCNA_01898 at 2041.263 kb on + strand, within CCNA_01898 at 2041.283 kb on + strand, within CCNA_01898 at 2041.314 kb on - strand, within CCNA_01898 at 2041.350 kb on - strand, within CCNA_01898 at 2041.374 kb on - strand, within CCNA_01898 at 2041.406 kb on - strand, within CCNA_01898 at 2041.408 kb on + strand, within CCNA_01898 at 2041.413 kb on + strand, within CCNA_01898 at 2041.426 kb on - strand, within CCNA_01898 at 2041.496 kb on + strand, within CCNA_01898 at 2041.512 kb on - strand, within CCNA_01898 at 2041.512 kb on - strand, within CCNA_01898 at 2041.513 kb on - strand at 2041.574 kb on + strand at 2041.582 kb on - strand at 2041.588 kb on + strand at 2041.624 kb on - strand at 2041.640 kb on + strand at 2041.653 kb on - strand at 2041.678 kb on + strand at 2041.678 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine (N) remove 2,039,902 + -1.2 2,039,904 + -0.5 2,039,910 - -1.2 2,039,922 + +1.3 2,039,922 + -2.1 2,039,923 - +0.0 2,039,930 - -2.5 2,039,930 - -1.0 2,039,968 - -0.6 2,040,019 - -1.0 2,040,058 + -0.9 2,040,140 + CCNA_01897 0.12 +1.2 2,040,150 + CCNA_01897 0.13 -1.4 2,040,174 + CCNA_01897 0.16 -0.4 2,040,219 + CCNA_01897 0.21 -3.6 2,040,227 - CCNA_01897 0.22 -0.3 2,040,227 - CCNA_01897 0.22 -2.0 2,040,277 + CCNA_01897 0.29 -2.3 2,040,280 + CCNA_01897 0.29 -1.0 2,040,303 + CCNA_01897 0.32 -0.8 2,040,303 + CCNA_01897 0.32 -1.3 2,040,303 + CCNA_01897 0.32 -0.4 2,040,311 - CCNA_01897 0.33 -1.1 2,040,386 + CCNA_01897 0.42 -1.4 2,040,392 + CCNA_01897 0.43 -0.8 2,040,480 - CCNA_01897 0.54 -1.2 2,040,480 - CCNA_01897 0.54 -0.6 2,040,498 - CCNA_01897 0.56 +0.2 2,040,508 - CCNA_01897 0.57 -1.8 2,040,581 + CCNA_01897 0.66 -2.1 2,040,603 - CCNA_01897 0.69 +0.6 2,040,608 - CCNA_01897 0.70 -0.7 2,040,626 + CCNA_01897 0.72 +0.9 2,040,626 + CCNA_01897 0.72 -0.4 2,040,644 + CCNA_01897 0.74 -1.0 2,040,645 - CCNA_01897 0.74 -0.9 2,040,677 - CCNA_01897 0.78 -0.2 2,040,709 + CCNA_01897 0.82 -0.9 2,040,714 + CCNA_01897 0.83 -1.3 2,040,737 + +0.6 2,040,752 - CCNA_01897 0.87 +0.4 2,040,766 + CCNA_01897 0.89 +0.3 2,040,766 + CCNA_01897 0.89 +0.3 2,040,777 + -2.1 2,040,782 + -1.9 2,040,846 + -0.6 2,040,859 - -1.3 2,040,906 - +1.1 2,040,911 - +1.9 2,040,927 - -1.0 2,041,016 - CCNA_01898 0.21 -0.1 2,041,067 - CCNA_01898 0.28 -0.3 2,041,099 + CCNA_01898 0.32 -2.2 2,041,107 - CCNA_01898 0.33 -0.1 2,041,107 - CCNA_01898 0.33 +2.2 2,041,154 - CCNA_01898 0.39 +1.9 2,041,160 + CCNA_01898 0.39 -2.7 2,041,263 + CCNA_01898 0.52 -1.9 2,041,283 + CCNA_01898 0.55 -1.9 2,041,314 - CCNA_01898 0.59 -1.1 2,041,350 - CCNA_01898 0.63 +0.5 2,041,374 - CCNA_01898 0.66 +0.3 2,041,406 - CCNA_01898 0.70 -0.3 2,041,408 + CCNA_01898 0.71 +0.9 2,041,413 + CCNA_01898 0.71 -0.3 2,041,426 - CCNA_01898 0.73 +1.0 2,041,496 + CCNA_01898 0.82 -1.2 2,041,512 - CCNA_01898 0.84 +1.5 2,041,512 - CCNA_01898 0.84 +0.4 2,041,513 - +1.3 2,041,574 + +0.3 2,041,582 - -1.8 2,041,588 + -0.5 2,041,624 - -1.1 2,041,640 + -1.0 2,041,653 - +2.4 2,041,678 + -0.5 2,041,678 + +0.9
Or see this region's nucleotide sequence