Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01583

Experiment: Putrescine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_01580 and CCNA_01581 are separated by 108 nucleotidesCCNA_01581 and CCNA_01582 are separated by 114 nucleotidesCCNA_01582 and CCNA_01583 are separated by 69 nucleotidesCCNA_01583 and CCNA_03954 overlap by 239 nucleotidesCCNA_03954 and CCNA_01584 are separated by 75 nucleotides CCNA_01580: CCNA_01580 - M15 superfamily membrane peptidase, at 1,696,883 to 1,697,533 _01580 CCNA_01581: CCNA_01581 - hypothetical protein, at 1,697,642 to 1,697,974 _01581 CCNA_01582: CCNA_01582 - Glutathione-dependent formaldehyde-activating enzyme, at 1,698,089 to 1,698,451 _01582 CCNA_01583: CCNA_01583 - phosphate-binding protein, at 1,698,521 to 1,699,561 _01583 CCNA_03954: CCNA_03954 - hypothetical protein, at 1,699,323 to 1,699,610 _03954 CCNA_01584: CCNA_01584 - multimodular transpeptidase-transglycosylase PBP 1A, at 1,699,686 to 1,702,070 _01584 Position (kb) 1698 1699 1700Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7at 1697.545 kb on + strandat 1697.584 kb on + strandat 1697.612 kb on - strandat 1697.634 kb on + strandat 1697.634 kb on + strandat 1697.644 kb on - strandat 1697.644 kb on - strandat 1697.651 kb on + strandat 1697.669 kb on + strandat 1697.760 kb on + strand, within CCNA_01581at 1697.773 kb on - strand, within CCNA_01581at 1697.829 kb on - strand, within CCNA_01581at 1697.850 kb on - strand, within CCNA_01581at 1697.850 kb on - strand, within CCNA_01581at 1698.002 kb on - strandat 1698.018 kb on + strandat 1698.018 kb on + strandat 1698.126 kb on + strand, within CCNA_01582at 1698.136 kb on + strand, within CCNA_01582at 1698.237 kb on - strand, within CCNA_01582at 1698.389 kb on - strand, within CCNA_01582at 1698.396 kb on - strand, within CCNA_01582at 1698.406 kb on + strand, within CCNA_01582at 1698.421 kb on + strandat 1698.429 kb on - strandat 1698.721 kb on - strand, within CCNA_01583at 1698.721 kb on - strand, within CCNA_01583at 1698.762 kb on + strand, within CCNA_01583at 1698.895 kb on - strand, within CCNA_01583at 1699.027 kb on + strand, within CCNA_01583at 1699.036 kb on + strandat 1699.044 kb on + strand, within CCNA_01583at 1699.152 kb on - strand, within CCNA_01583at 1699.164 kb on + strand, within CCNA_01583at 1699.342 kb on - strandat 1699.484 kb on - strandat 1699.484 kb on - strandat 1699.578 kb on - strand, within CCNA_03954at 1699.597 kb on - strandat 1699.607 kb on - strandat 1699.607 kb on - strandat 1699.678 kb on - strandat 1699.726 kb on - strandat 1699.786 kb on - strandat 1699.899 kb on - strandat 1699.939 kb on - strand, within CCNA_01584at 1699.941 kb on + strand, within CCNA_01584at 1699.971 kb on + strand, within CCNA_01584at 1700.000 kb on - strand, within CCNA_01584at 1700.013 kb on + strand, within CCNA_01584at 1700.016 kb on - strand, within CCNA_01584at 1700.021 kb on - strand, within CCNA_01584at 1700.031 kb on - strand, within CCNA_01584at 1700.063 kb on + strand, within CCNA_01584at 1700.086 kb on + strand, within CCNA_01584at 1700.124 kb on + strand, within CCNA_01584at 1700.137 kb on + strand, within CCNA_01584at 1700.139 kb on - strand, within CCNA_01584at 1700.170 kb on - strand, within CCNA_01584at 1700.202 kb on + strand, within CCNA_01584at 1700.232 kb on + strand, within CCNA_01584at 1700.240 kb on - strand, within CCNA_01584at 1700.240 kb on - strand, within CCNA_01584at 1700.244 kb on + strand, within CCNA_01584at 1700.245 kb on - strand, within CCNA_01584at 1700.250 kb on - strand, within CCNA_01584at 1700.269 kb on - strand, within CCNA_01584at 1700.276 kb on + strand, within CCNA_01584at 1700.291 kb on + strandat 1700.299 kb on - strand, within CCNA_01584at 1700.302 kb on + strand, within CCNA_01584at 1700.320 kb on - strand, within CCNA_01584at 1700.375 kb on - strand, within CCNA_01584at 1700.390 kb on - strand, within CCNA_01584at 1700.403 kb on + strand, within CCNA_01584at 1700.411 kb on - strand, within CCNA_01584at 1700.434 kb on + strand, within CCNA_01584at 1700.439 kb on + strand, within CCNA_01584at 1700.441 kb on + strand, within CCNA_01584at 1700.452 kb on - strand, within CCNA_01584at 1700.475 kb on + strand, within CCNA_01584at 1700.483 kb on - strand, within CCNA_01584at 1700.490 kb on - strand, within CCNA_01584at 1700.553 kb on + strand, within CCNA_01584at 1700.561 kb on + strand, within CCNA_01584

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (N)
remove
1,697,545 + +1.8
1,697,584 + +2.1
1,697,612 - +3.3
1,697,634 + +1.7
1,697,634 + +0.9
1,697,644 - -0.1
1,697,644 - -1.2
1,697,651 + +1.4
1,697,669 + -0.3
1,697,760 + CCNA_01581 0.35 +0.1
1,697,773 - CCNA_01581 0.39 +0.7
1,697,829 - CCNA_01581 0.56 +0.9
1,697,850 - CCNA_01581 0.62 +0.5
1,697,850 - CCNA_01581 0.62 +3.1
1,698,002 - -0.3
1,698,018 + +2.3
1,698,018 + +0.4
1,698,126 + CCNA_01582 0.10 +0.7
1,698,136 + CCNA_01582 0.13 +0.8
1,698,237 - CCNA_01582 0.41 +0.3
1,698,389 - CCNA_01582 0.83 +0.9
1,698,396 - CCNA_01582 0.85 -1.3
1,698,406 + CCNA_01582 0.87 -0.4
1,698,421 + +1.0
1,698,429 - +1.3
1,698,721 - CCNA_01583 0.19 +3.9
1,698,721 - CCNA_01583 0.19 +5.3
1,698,762 + CCNA_01583 0.23 +2.9
1,698,895 - CCNA_01583 0.36 +4.9
1,699,027 + CCNA_01583 0.49 +3.4
1,699,036 + +2.4
1,699,044 + CCNA_01583 0.50 +4.7
1,699,152 - CCNA_01583 0.61 +6.8
1,699,164 + CCNA_01583 0.62 +5.2
1,699,342 - +4.8
1,699,484 - +5.1
1,699,484 - +5.2
1,699,578 - CCNA_03954 0.89 +0.9
1,699,597 - +1.4
1,699,607 - +0.9
1,699,607 - +1.0
1,699,678 - +1.2
1,699,726 - +0.3
1,699,786 - +0.8
1,699,899 - +0.7
1,699,939 - CCNA_01584 0.11 +0.8
1,699,941 + CCNA_01584 0.11 -0.1
1,699,971 + CCNA_01584 0.12 +3.4
1,700,000 - CCNA_01584 0.13 +0.7
1,700,013 + CCNA_01584 0.14 +0.5
1,700,016 - CCNA_01584 0.14 +0.7
1,700,021 - CCNA_01584 0.14 +1.0
1,700,031 - CCNA_01584 0.14 +0.4
1,700,063 + CCNA_01584 0.16 -1.1
1,700,086 + CCNA_01584 0.17 -1.9
1,700,124 + CCNA_01584 0.18 -0.6
1,700,137 + CCNA_01584 0.19 +0.6
1,700,139 - CCNA_01584 0.19 -2.0
1,700,170 - CCNA_01584 0.20 +1.4
1,700,202 + CCNA_01584 0.22 +1.7
1,700,232 + CCNA_01584 0.23 -0.3
1,700,240 - CCNA_01584 0.23 +1.3
1,700,240 - CCNA_01584 0.23 +0.5
1,700,244 + CCNA_01584 0.23 -1.0
1,700,245 - CCNA_01584 0.23 +0.6
1,700,250 - CCNA_01584 0.24 +0.7
1,700,269 - CCNA_01584 0.24 +0.3
1,700,276 + CCNA_01584 0.25 +0.5
1,700,291 + +2.3
1,700,299 - CCNA_01584 0.26 +1.0
1,700,302 + CCNA_01584 0.26 -3.4
1,700,320 - CCNA_01584 0.27 +0.0
1,700,375 - CCNA_01584 0.29 +1.2
1,700,390 - CCNA_01584 0.30 +1.5
1,700,403 + CCNA_01584 0.30 +0.5
1,700,411 - CCNA_01584 0.30 -0.6
1,700,434 + CCNA_01584 0.31 -1.5
1,700,439 + CCNA_01584 0.32 +0.9
1,700,441 + CCNA_01584 0.32 -1.2
1,700,452 - CCNA_01584 0.32 +0.9
1,700,475 + CCNA_01584 0.33 -1.7
1,700,483 - CCNA_01584 0.33 +1.0
1,700,490 - CCNA_01584 0.34 +1.4
1,700,553 + CCNA_01584 0.36 -1.0
1,700,561 + CCNA_01584 0.37 +0.2

Or see this region's nucleotide sequence