Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00501

Experiment: Putrescine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00499 and CCNA_00500 overlap by 4 nucleotidesCCNA_00500 and CCNA_00501 overlap by 4 nucleotidesCCNA_00501 and CCNA_00502 are separated by 56 nucleotidesCCNA_00502 and CCNA_00503 are separated by 98 nucleotides CCNA_00499: CCNA_00499 - hypothetical protein, at 515,480 to 515,845 _00499 CCNA_00500: CCNA_00500 - hydroxymethylglutaryl-CoA lyase, at 515,842 to 516,741 _00500 CCNA_00501: CCNA_00501 - glucosyltransferase, at 516,738 to 518,417 _00501 CCNA_00502: CCNA_00502 - glycosyl transferase family protein, at 518,474 to 519,211 _00502 CCNA_00503: CCNA_00503 - hypothetical protein, at 519,310 to 519,732 _00503 Position (kb) 516 517 518 519Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 515.767 kb on + strand, within CCNA_00499at 515.820 kb on - strandat 515.846 kb on - strandat 516.744 kb on - strandat 516.744 kb on - strandat 516.744 kb on - strandat 516.748 kb on + strandat 516.768 kb on - strandat 516.820 kb on - strandat 516.821 kb on - strandat 516.821 kb on - strandat 516.856 kb on + strandat 516.861 kb on + strandat 516.934 kb on - strand, within CCNA_00501at 517.036 kb on - strand, within CCNA_00501at 517.068 kb on + strand, within CCNA_00501at 517.164 kb on - strand, within CCNA_00501at 517.224 kb on - strand, within CCNA_00501at 517.229 kb on + strand, within CCNA_00501at 517.254 kb on - strand, within CCNA_00501at 517.317 kb on + strand, within CCNA_00501at 517.317 kb on + strand, within CCNA_00501at 517.392 kb on - strand, within CCNA_00501at 517.403 kb on - strand, within CCNA_00501at 517.473 kb on - strand, within CCNA_00501at 517.521 kb on + strand, within CCNA_00501at 517.586 kb on - strand, within CCNA_00501at 517.586 kb on - strand, within CCNA_00501at 517.671 kb on - strand, within CCNA_00501at 517.710 kb on - strand, within CCNA_00501at 517.710 kb on - strand, within CCNA_00501at 517.710 kb on - strand, within CCNA_00501at 517.710 kb on - strand, within CCNA_00501at 517.710 kb on - strand, within CCNA_00501at 517.716 kb on - strand, within CCNA_00501at 517.792 kb on + strand, within CCNA_00501at 517.792 kb on + strand, within CCNA_00501at 517.847 kb on - strand, within CCNA_00501at 517.847 kb on - strand, within CCNA_00501at 517.903 kb on + strand, within CCNA_00501at 517.903 kb on + strand, within CCNA_00501at 517.903 kb on + strand, within CCNA_00501at 517.903 kb on + strand, within CCNA_00501at 517.903 kb on + strand, within CCNA_00501at 517.903 kb on + strand, within CCNA_00501at 517.911 kb on - strand, within CCNA_00501at 517.911 kb on - strand, within CCNA_00501at 517.911 kb on - strand, within CCNA_00501at 517.911 kb on - strand, within CCNA_00501at 517.911 kb on - strand, within CCNA_00501at 517.911 kb on - strand, within CCNA_00501at 517.911 kb on - strand, within CCNA_00501at 517.911 kb on - strand, within CCNA_00501at 517.918 kb on + strand, within CCNA_00501at 517.918 kb on + strand, within CCNA_00501at 517.918 kb on + strand, within CCNA_00501at 517.918 kb on + strand, within CCNA_00501at 517.918 kb on + strand, within CCNA_00501at 517.918 kb on + strand, within CCNA_00501at 517.918 kb on + strand, within CCNA_00501at 517.918 kb on + strand, within CCNA_00501at 517.918 kb on + strand, within CCNA_00501at 517.918 kb on + strand, within CCNA_00501at 517.926 kb on - strand, within CCNA_00501at 517.926 kb on - strand, within CCNA_00501at 517.926 kb on - strand, within CCNA_00501at 517.926 kb on - strand, within CCNA_00501at 517.926 kb on - strand, within CCNA_00501at 517.926 kb on - strand, within CCNA_00501at 517.926 kb on - strand, within CCNA_00501at 517.926 kb on - strand, within CCNA_00501at 517.926 kb on - strand, within CCNA_00501at 517.926 kb on - strand, within CCNA_00501at 517.947 kb on - strand, within CCNA_00501at 517.972 kb on + strand, within CCNA_00501at 517.980 kb on - strand, within CCNA_00501at 517.980 kb on - strand, within CCNA_00501at 518.053 kb on + strand, within CCNA_00501at 518.128 kb on - strand, within CCNA_00501at 518.131 kb on + strand, within CCNA_00501at 518.139 kb on - strand, within CCNA_00501at 518.344 kb on + strandat 518.433 kb on - strandat 518.461 kb on + strandat 518.774 kb on + strand, within CCNA_00502at 519.206 kb on + strandat 519.214 kb on - strandat 519.214 kb on - strandat 519.251 kb on - strandat 519.258 kb on + strandat 519.259 kb on + strandat 519.259 kb on + strandat 519.259 kb on + strandat 519.259 kb on + strandat 519.259 kb on + strandat 519.259 kb on + strandat 519.267 kb on - strandat 519.267 kb on - strandat 519.267 kb on - strandat 519.299 kb on + strandat 519.312 kb on - strandat 519.312 kb on - strandat 519.328 kb on + strandat 519.336 kb on - strandat 519.365 kb on + strand, within CCNA_00503at 519.373 kb on - strand, within CCNA_00503at 519.375 kb on + strand, within CCNA_00503at 519.383 kb on - strand, within CCNA_00503at 519.384 kb on + strand, within CCNA_00503at 519.391 kb on - strand, within CCNA_00503at 519.414 kb on - strand, within CCNA_00503

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (N)
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515,767 + CCNA_00499 0.78 +0.5
515,820 - +1.2
515,846 - +0.7
516,744 - +1.1
516,744 - +0.6
516,744 - +1.0
516,748 + +0.6
516,768 - +1.7
516,820 - -1.4
516,821 - -1.9
516,821 - -2.5
516,856 + -2.9
516,861 + -2.1
516,934 - CCNA_00501 0.12 -1.1
517,036 - CCNA_00501 0.18 +1.8
517,068 + CCNA_00501 0.20 -2.6
517,164 - CCNA_00501 0.25 -3.6
517,224 - CCNA_00501 0.29 -1.2
517,229 + CCNA_00501 0.29 +0.2
517,254 - CCNA_00501 0.31 -3.8
517,317 + CCNA_00501 0.34 -0.7
517,317 + CCNA_00501 0.34 -0.2
517,392 - CCNA_00501 0.39 -0.1
517,403 - CCNA_00501 0.40 -1.5
517,473 - CCNA_00501 0.44 -0.6
517,521 + CCNA_00501 0.47 -1.9
517,586 - CCNA_00501 0.50 -0.3
517,586 - CCNA_00501 0.50 -2.6
517,671 - CCNA_00501 0.56 -1.4
517,710 - CCNA_00501 0.58 -2.0
517,710 - CCNA_00501 0.58 -1.5
517,710 - CCNA_00501 0.58 -1.4
517,710 - CCNA_00501 0.58 -1.5
517,710 - CCNA_00501 0.58 -2.7
517,716 - CCNA_00501 0.58 -0.7
517,792 + CCNA_00501 0.63 -0.2
517,792 + CCNA_00501 0.63 -1.2
517,847 - CCNA_00501 0.66 -0.2
517,847 - CCNA_00501 0.66 -1.6
517,903 + CCNA_00501 0.69 -1.6
517,903 + CCNA_00501 0.69 -2.2
517,903 + CCNA_00501 0.69 -0.6
517,903 + CCNA_00501 0.69 -2.1
517,903 + CCNA_00501 0.69 -2.0
517,903 + CCNA_00501 0.69 -2.0
517,911 - CCNA_00501 0.70 +0.4
517,911 - CCNA_00501 0.70 -2.7
517,911 - CCNA_00501 0.70 -0.3
517,911 - CCNA_00501 0.70 -0.6
517,911 - CCNA_00501 0.70 -0.4
517,911 - CCNA_00501 0.70 -0.4
517,911 - CCNA_00501 0.70 -1.3
517,911 - CCNA_00501 0.70 -0.1
517,918 + CCNA_00501 0.70 -2.5
517,918 + CCNA_00501 0.70 -0.7
517,918 + CCNA_00501 0.70 -1.6
517,918 + CCNA_00501 0.70 -0.2
517,918 + CCNA_00501 0.70 -0.1
517,918 + CCNA_00501 0.70 -0.1
517,918 + CCNA_00501 0.70 -0.2
517,918 + CCNA_00501 0.70 -2.4
517,918 + CCNA_00501 0.70 -0.1
517,918 + CCNA_00501 0.70 -0.4
517,926 - CCNA_00501 0.71 -3.4
517,926 - CCNA_00501 0.71 -1.3
517,926 - CCNA_00501 0.71 -0.2
517,926 - CCNA_00501 0.71 -2.2
517,926 - CCNA_00501 0.71 -0.9
517,926 - CCNA_00501 0.71 -2.1
517,926 - CCNA_00501 0.71 +1.8
517,926 - CCNA_00501 0.71 -0.6
517,926 - CCNA_00501 0.71 -0.7
517,926 - CCNA_00501 0.71 -2.0
517,947 - CCNA_00501 0.72 -1.2
517,972 + CCNA_00501 0.73 -2.5
517,980 - CCNA_00501 0.74 +0.2
517,980 - CCNA_00501 0.74 -0.7
518,053 + CCNA_00501 0.78 -1.2
518,128 - CCNA_00501 0.83 -2.5
518,131 + CCNA_00501 0.83 -2.8
518,139 - CCNA_00501 0.83 -0.8
518,344 + -1.7
518,433 - +0.1
518,461 + -1.1
518,774 + CCNA_00502 0.41 -0.0
519,206 + +1.4
519,214 - -0.8
519,214 - -2.7
519,251 - +2.6
519,258 + +1.2
519,259 + +1.4
519,259 + +1.7
519,259 + +1.2
519,259 + +1.6
519,259 + -2.2
519,259 + +0.2
519,267 - -0.0
519,267 - -0.0
519,267 - +0.3
519,299 + +2.2
519,312 - -1.8
519,312 - -0.4
519,328 + +0.4
519,336 - -1.0
519,365 + CCNA_00503 0.13 -0.0
519,373 - CCNA_00503 0.15 -0.1
519,375 + CCNA_00503 0.15 +0.3
519,383 - CCNA_00503 0.17 +1.3
519,384 + CCNA_00503 0.17 +2.8
519,391 - CCNA_00503 0.19 -1.2
519,414 - CCNA_00503 0.25 +0.1

Or see this region's nucleotide sequence