Experiment: Putrescine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00388 and CCNA_00389 are separated by 97 nucleotides CCNA_00389 and CCNA_00390 are separated by 103 nucleotides CCNA_00390 and CCNA_00391 overlap by 4 nucleotides CCNA_00391 and CCNA_00392 are separated by 80 nucleotides
CCNA_00388: CCNA_00388 - esterase lipase Family protein, at 404,125 to 405,006
_00388
CCNA_00389: CCNA_00389 - aminomethyltransferase family protein, at 405,104 to 405,895
_00389
CCNA_00390: CCNA_00390 - ADP-heptose--LPS heptosyltransferase, at 405,999 to 407,213
_00390
CCNA_00391: CCNA_00391 - hypothetical protein, at 407,210 to 407,767
_00391
CCNA_00392: CCNA_00392 - dihydroorotase, at 407,848 to 409,182
_00392
Position (kb) 405
406
407
408 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 405.103 kb on - strand at 405.119 kb on - strand at 405.313 kb on - strand, within CCNA_00389 at 405.428 kb on + strand, within CCNA_00389 at 405.452 kb on + strand, within CCNA_00389 at 405.516 kb on - strand, within CCNA_00389 at 405.724 kb on + strand, within CCNA_00389 at 405.941 kb on - strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.999 kb on + strand at 406.009 kb on + strand at 406.009 kb on + strand at 406.107 kb on + strand at 406.185 kb on - strand, within CCNA_00390 at 406.190 kb on + strand, within CCNA_00390 at 406.190 kb on + strand, within CCNA_00390 at 406.190 kb on + strand, within CCNA_00390 at 406.196 kb on + strand, within CCNA_00390 at 406.210 kb on + strand, within CCNA_00390 at 406.210 kb on + strand, within CCNA_00390 at 406.335 kb on + strand, within CCNA_00390 at 406.347 kb on + strand, within CCNA_00390 at 406.373 kb on + strand, within CCNA_00390 at 406.419 kb on + strand, within CCNA_00390 at 406.419 kb on + strand, within CCNA_00390 at 406.451 kb on + strand, within CCNA_00390 at 406.459 kb on - strand, within CCNA_00390 at 406.559 kb on + strand, within CCNA_00390 at 406.614 kb on - strand, within CCNA_00390 at 406.671 kb on - strand, within CCNA_00390 at 406.698 kb on + strand, within CCNA_00390 at 406.698 kb on + strand, within CCNA_00390 at 406.706 kb on - strand, within CCNA_00390 at 406.727 kb on + strand, within CCNA_00390 at 406.816 kb on + strand, within CCNA_00390 at 406.840 kb on + strand, within CCNA_00390 at 406.855 kb on + strand, within CCNA_00390 at 406.863 kb on - strand, within CCNA_00390 at 406.898 kb on + strand, within CCNA_00390 at 406.898 kb on + strand, within CCNA_00390 at 406.941 kb on + strand, within CCNA_00390 at 406.943 kb on + strand, within CCNA_00390 at 406.943 kb on + strand, within CCNA_00390 at 406.943 kb on + strand, within CCNA_00390 at 406.943 kb on + strand, within CCNA_00390 at 406.943 kb on + strand, within CCNA_00390 at 406.943 kb on + strand, within CCNA_00390 at 406.951 kb on - strand, within CCNA_00390 at 406.951 kb on - strand, within CCNA_00390 at 406.976 kb on + strand, within CCNA_00390 at 406.976 kb on + strand, within CCNA_00390 at 406.984 kb on - strand, within CCNA_00390 at 407.064 kb on + strand, within CCNA_00390 at 407.064 kb on + strand, within CCNA_00390 at 407.064 kb on + strand, within CCNA_00390 at 407.064 kb on + strand, within CCNA_00390 at 407.064 kb on + strand, within CCNA_00390 at 407.064 kb on + strand, within CCNA_00390 at 407.064 kb on + strand, within CCNA_00390 at 407.064 kb on + strand, within CCNA_00390 at 407.064 kb on + strand, within CCNA_00390 at 407.064 kb on + strand, within CCNA_00390 at 407.064 kb on + strand, within CCNA_00390 at 407.072 kb on - strand, within CCNA_00390 at 407.072 kb on - strand, within CCNA_00390 at 407.072 kb on - strand, within CCNA_00390 at 407.072 kb on - strand, within CCNA_00390 at 407.072 kb on - strand, within CCNA_00390 at 407.072 kb on - strand, within CCNA_00390 at 407.072 kb on - strand, within CCNA_00390 at 407.072 kb on - strand, within CCNA_00390 at 407.072 kb on - strand, within CCNA_00390 at 407.072 kb on - strand, within CCNA_00390 at 407.077 kb on - strand, within CCNA_00390 at 407.129 kb on - strand at 407.137 kb on - strand at 407.158 kb on + strand at 407.158 kb on + strand at 407.166 kb on - strand at 407.168 kb on + strand at 407.168 kb on + strand at 407.175 kb on + strand at 407.176 kb on - strand at 407.176 kb on - strand at 407.183 kb on - strand at 407.203 kb on - strand at 407.215 kb on + strand at 407.244 kb on + strand at 407.269 kb on - strand, within CCNA_00391 at 407.269 kb on - strand, within CCNA_00391 at 407.269 kb on - strand, within CCNA_00391 at 407.299 kb on + strand, within CCNA_00391 at 407.376 kb on - strand, within CCNA_00391 at 407.383 kb on + strand, within CCNA_00391 at 407.391 kb on - strand, within CCNA_00391 at 407.409 kb on - strand, within CCNA_00391 at 407.411 kb on + strand, within CCNA_00391 at 407.419 kb on - strand, within CCNA_00391 at 407.455 kb on + strand, within CCNA_00391 at 407.502 kb on - strand, within CCNA_00391 at 407.529 kb on + strand, within CCNA_00391 at 407.529 kb on + strand, within CCNA_00391 at 407.608 kb on + strand, within CCNA_00391 at 407.608 kb on + strand, within CCNA_00391 at 407.608 kb on + strand, within CCNA_00391 at 407.608 kb on + strand, within CCNA_00391 at 407.608 kb on + strand, within CCNA_00391 at 407.608 kb on + strand, within CCNA_00391 at 407.608 kb on + strand, within CCNA_00391 at 407.608 kb on + strand, within CCNA_00391 at 407.608 kb on + strand, within CCNA_00391 at 407.608 kb on + strand, within CCNA_00391 at 407.608 kb on + strand, within CCNA_00391 at 407.608 kb on + strand, within CCNA_00391 at 407.608 kb on + strand, within CCNA_00391 at 407.608 kb on + strand, within CCNA_00391 at 407.608 kb on + strand, within CCNA_00391 at 407.608 kb on + strand, within CCNA_00391 at 407.608 kb on + strand, within CCNA_00391 at 407.608 kb on + strand, within CCNA_00391 at 407.608 kb on + strand, within CCNA_00391 at 407.608 kb on + strand, within CCNA_00391 at 407.616 kb on - strand, within CCNA_00391 at 407.616 kb on - strand, within CCNA_00391 at 407.627 kb on + strand, within CCNA_00391 at 407.650 kb on + strand, within CCNA_00391 at 407.650 kb on - strand, within CCNA_00391 at 407.652 kb on + strand, within CCNA_00391 at 407.656 kb on + strand, within CCNA_00391 at 407.665 kb on - strand, within CCNA_00391 at 407.665 kb on - strand, within CCNA_00391 at 407.691 kb on + strand, within CCNA_00391 at 407.692 kb on - strand, within CCNA_00391 at 407.701 kb on + strand, within CCNA_00391 at 407.719 kb on + strand at 407.729 kb on + strand at 407.730 kb on + strand at 407.737 kb on - strand at 407.761 kb on + strand at 407.769 kb on - strand at 407.796 kb on + strand at 407.796 kb on + strand at 407.796 kb on + strand at 407.804 kb on - strand at 407.804 kb on - strand at 407.814 kb on - strand at 407.820 kb on + strand at 407.820 kb on + strand at 407.820 kb on + strand at 407.821 kb on + strand at 407.828 kb on - strand at 407.829 kb on - strand at 407.830 kb on + strand at 407.858 kb on + strand at 407.858 kb on + strand at 407.858 kb on + strand at 407.858 kb on + strand at 407.872 kb on - strand at 407.902 kb on + strand at 407.975 kb on - strand at 407.983 kb on + strand, within CCNA_00392 at 407.983 kb on + strand, within CCNA_00392 at 408.097 kb on + strand, within CCNA_00392 at 408.097 kb on + strand, within CCNA_00392 at 408.097 kb on + strand, within CCNA_00392 at 408.097 kb on + strand, within CCNA_00392 at 408.097 kb on + strand, within CCNA_00392 at 408.097 kb on + strand, within CCNA_00392 at 408.105 kb on - strand, within CCNA_00392 at 408.105 kb on - strand, within CCNA_00392 at 408.105 kb on - strand, within CCNA_00392 at 408.118 kb on + strand, within CCNA_00392 at 408.129 kb on + strand, within CCNA_00392 at 408.129 kb on + strand, within CCNA_00392 at 408.144 kb on + strand, within CCNA_00392 at 408.157 kb on - strand, within CCNA_00392
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine (N) remove 405,103 - -0.3 405,119 - -0.4 405,313 - CCNA_00389 0.26 +3.0 405,428 + CCNA_00389 0.41 +0.9 405,452 + CCNA_00389 0.44 +1.6 405,516 - CCNA_00389 0.52 +1.3 405,724 + CCNA_00389 0.78 -0.9 405,941 - +1.3 405,983 + -2.6 405,983 + -2.6 405,983 + -1.2 405,983 + +0.3 405,983 + -0.9 405,983 + -0.4 405,983 + -2.5 405,983 + -0.4 405,983 + -0.5 405,983 + -0.8 405,983 + -0.4 405,983 + -0.6 405,983 + +0.7 405,983 + -1.0 405,983 + -3.3 405,983 + -0.3 405,983 + -1.0 405,983 + -0.7 405,983 + -0.2 405,983 + -0.7 405,983 + +0.3 405,983 + -2.4 405,983 + -0.6 405,983 + -0.8 405,983 + +1.0 405,983 + -0.3 405,983 + -2.3 405,983 + -0.1 405,983 + -0.0 405,983 + +0.4 405,983 + +0.1 405,983 + -0.4 405,983 + -0.7 405,991 - -1.9 405,991 - -2.0 405,991 - -1.5 405,991 - +0.1 405,991 - -1.8 405,991 - -1.4 405,991 - -1.0 405,991 - -1.9 405,991 - +0.7 405,991 - -1.4 405,991 - +0.1 405,991 - -3.3 405,991 - -2.1 405,991 - -1.4 405,991 - -0.9 405,991 - -2.4 405,991 - -2.0 405,991 - -0.3 405,991 - +0.2 405,991 - -3.0 405,991 - -1.2 405,991 - +0.6 405,991 - -3.4 405,991 - -0.1 405,991 - -2.1 405,991 - -1.1 405,991 - -1.7 405,991 - -1.6 405,999 + -0.5 406,009 + -3.3 406,009 + -1.5 406,107 + -1.8 406,185 - CCNA_00390 0.15 -2.3 406,190 + CCNA_00390 0.16 -1.6 406,190 + CCNA_00390 0.16 -3.5 406,190 + CCNA_00390 0.16 -1.6 406,196 + CCNA_00390 0.16 +0.2 406,210 + CCNA_00390 0.17 -2.2 406,210 + CCNA_00390 0.17 -1.0 406,335 + CCNA_00390 0.28 -1.3 406,347 + CCNA_00390 0.29 -1.4 406,373 + CCNA_00390 0.31 -2.6 406,419 + CCNA_00390 0.35 -1.9 406,419 + CCNA_00390 0.35 -2.6 406,451 + CCNA_00390 0.37 -2.9 406,459 - CCNA_00390 0.38 -0.6 406,559 + CCNA_00390 0.46 -1.9 406,614 - CCNA_00390 0.51 -1.9 406,671 - CCNA_00390 0.55 -1.1 406,698 + CCNA_00390 0.58 -0.9 406,698 + CCNA_00390 0.58 -1.0 406,706 - CCNA_00390 0.58 -2.0 406,727 + CCNA_00390 0.60 -1.4 406,816 + CCNA_00390 0.67 -1.8 406,840 + CCNA_00390 0.69 -1.6 406,855 + CCNA_00390 0.70 +1.4 406,863 - CCNA_00390 0.71 -1.5 406,898 + CCNA_00390 0.74 -0.6 406,898 + CCNA_00390 0.74 -1.6 406,941 + CCNA_00390 0.78 -0.4 406,943 + CCNA_00390 0.78 -1.5 406,943 + CCNA_00390 0.78 -1.6 406,943 + CCNA_00390 0.78 -1.7 406,943 + CCNA_00390 0.78 -0.6 406,943 + CCNA_00390 0.78 -3.2 406,943 + CCNA_00390 0.78 -1.7 406,951 - CCNA_00390 0.78 -2.1 406,951 - CCNA_00390 0.78 -0.4 406,976 + CCNA_00390 0.80 -0.4 406,976 + CCNA_00390 0.80 +0.8 406,984 - CCNA_00390 0.81 -1.1 407,064 + CCNA_00390 0.88 -1.3 407,064 + CCNA_00390 0.88 -1.3 407,064 + CCNA_00390 0.88 -0.1 407,064 + CCNA_00390 0.88 -0.6 407,064 + CCNA_00390 0.88 -0.5 407,064 + CCNA_00390 0.88 -0.7 407,064 + CCNA_00390 0.88 -0.9 407,064 + CCNA_00390 0.88 -0.8 407,064 + CCNA_00390 0.88 -1.2 407,064 + CCNA_00390 0.88 -0.7 407,064 + CCNA_00390 0.88 -1.9 407,072 - CCNA_00390 0.88 -1.1 407,072 - CCNA_00390 0.88 -1.5 407,072 - CCNA_00390 0.88 -0.6 407,072 - CCNA_00390 0.88 -0.7 407,072 - CCNA_00390 0.88 -2.0 407,072 - CCNA_00390 0.88 -1.9 407,072 - CCNA_00390 0.88 -0.8 407,072 - CCNA_00390 0.88 -3.7 407,072 - CCNA_00390 0.88 -0.1 407,072 - CCNA_00390 0.88 -1.2 407,077 - CCNA_00390 0.89 -1.9 407,129 - +0.1 407,137 - -1.2 407,158 + +0.4 407,158 + +0.4 407,166 - -0.7 407,168 + +1.2 407,168 + +0.2 407,175 + -0.0 407,176 - -0.9 407,176 - -2.9 407,183 - -1.9 407,203 - -2.0 407,215 + +0.9 407,244 + +0.7 407,269 - CCNA_00391 0.11 -1.1 407,269 - CCNA_00391 0.11 +0.5 407,269 - CCNA_00391 0.11 -2.9 407,299 + CCNA_00391 0.16 +2.0 407,376 - CCNA_00391 0.30 -0.9 407,383 + CCNA_00391 0.31 +1.5 407,391 - CCNA_00391 0.32 -1.6 407,409 - CCNA_00391 0.36 -0.2 407,411 + CCNA_00391 0.36 +1.4 407,419 - CCNA_00391 0.37 -1.4 407,455 + CCNA_00391 0.44 +1.6 407,502 - CCNA_00391 0.52 -0.1 407,529 + CCNA_00391 0.57 -1.3 407,529 + CCNA_00391 0.57 +1.4 407,608 + CCNA_00391 0.71 +0.4 407,608 + CCNA_00391 0.71 -0.0 407,608 + CCNA_00391 0.71 +0.9 407,608 + CCNA_00391 0.71 -0.2 407,608 + CCNA_00391 0.71 -0.1 407,608 + CCNA_00391 0.71 +1.9 407,608 + CCNA_00391 0.71 +0.1 407,608 + CCNA_00391 0.71 +2.3 407,608 + CCNA_00391 0.71 +1.4 407,608 + CCNA_00391 0.71 +0.9 407,608 + CCNA_00391 0.71 +0.6 407,608 + CCNA_00391 0.71 +0.2 407,608 + CCNA_00391 0.71 -0.6 407,608 + CCNA_00391 0.71 +0.6 407,608 + CCNA_00391 0.71 -0.3 407,608 + CCNA_00391 0.71 +0.9 407,608 + CCNA_00391 0.71 +0.9 407,608 + CCNA_00391 0.71 +1.2 407,608 + CCNA_00391 0.71 +0.1 407,608 + CCNA_00391 0.71 +0.7 407,616 - CCNA_00391 0.73 -1.1 407,616 - CCNA_00391 0.73 -1.3 407,627 + CCNA_00391 0.75 +0.7 407,650 + CCNA_00391 0.79 +1.3 407,650 - CCNA_00391 0.79 -0.6 407,652 + CCNA_00391 0.79 +1.5 407,656 + CCNA_00391 0.80 +1.0 407,665 - CCNA_00391 0.82 +0.7 407,665 - CCNA_00391 0.82 -1.0 407,691 + CCNA_00391 0.86 +0.1 407,692 - CCNA_00391 0.86 +0.1 407,701 + CCNA_00391 0.88 +1.0 407,719 + +1.1 407,729 + +0.4 407,730 + +1.3 407,737 - -0.0 407,761 + +1.0 407,769 - +0.4 407,796 + +2.4 407,796 + +2.3 407,796 + +2.1 407,804 - -1.9 407,804 - -0.7 407,814 - -0.4 407,820 + +2.4 407,820 + +1.9 407,820 + +0.3 407,821 + +2.3 407,828 - -1.5 407,829 - -1.8 407,830 + +0.4 407,858 + +0.4 407,858 + -2.3 407,858 + -0.7 407,858 + -0.4 407,872 - +0.9 407,902 + -0.7 407,975 - -2.3 407,983 + CCNA_00392 0.10 -1.4 407,983 + CCNA_00392 0.10 -2.1 408,097 + CCNA_00392 0.19 -1.1 408,097 + CCNA_00392 0.19 -2.5 408,097 + CCNA_00392 0.19 -1.0 408,097 + CCNA_00392 0.19 -0.8 408,097 + CCNA_00392 0.19 -0.8 408,097 + CCNA_00392 0.19 -1.7 408,105 - CCNA_00392 0.19 -0.9 408,105 - CCNA_00392 0.19 -1.1 408,105 - CCNA_00392 0.19 -0.6 408,118 + CCNA_00392 0.20 -1.3 408,129 + CCNA_00392 0.21 -1.3 408,129 + CCNA_00392 0.21 -3.9 408,144 + CCNA_00392 0.22 -1.5 408,157 - CCNA_00392 0.23 -1.6
Or see this region's nucleotide sequence