Experiment: R2A with Chloramphenicol 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS24355 and CA265_RS24360 are separated by 6 nucleotides CA265_RS24360 and CA265_RS24365 are separated by 6 nucleotides CA265_RS24365 and CA265_RS24370 are separated by 49 nucleotides CA265_RS24370 and CA265_RS24375 are separated by 212 nucleotides CA265_RS24375 and CA265_RS24380 are separated by 5 nucleotides
CA265_RS24355: CA265_RS24355 - transcriptional regulator, at 5,932,291 to 5,932,614
_RS24355
CA265_RS24360: CA265_RS24360 - ATPase, at 5,932,621 to 5,933,088
_RS24360
CA265_RS24365: CA265_RS24365 - DoxX-like family protein, at 5,933,095 to 5,933,478
_RS24365
CA265_RS24370: CA265_RS24370 - hypothetical protein, at 5,933,528 to 5,934,112
_RS24370
CA265_RS24375: CA265_RS24375 - hypothetical protein, at 5,934,325 to 5,934,540
_RS24375
CA265_RS24380: CA265_RS24380 - hypothetical protein, at 5,934,546 to 5,935,121
_RS24380
Position (kb) 5933
5934
5935 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5932.584 kb on + strand at 5932.584 kb on + strand at 5932.617 kb on + strand at 5932.617 kb on + strand at 5932.618 kb on - strand at 5932.717 kb on + strand, within CA265_RS24360 at 5932.718 kb on - strand, within CA265_RS24360 at 5932.783 kb on + strand, within CA265_RS24360 at 5932.793 kb on - strand, within CA265_RS24360 at 5932.851 kb on - strand, within CA265_RS24360 at 5932.851 kb on - strand, within CA265_RS24360 at 5932.888 kb on + strand, within CA265_RS24360 at 5932.962 kb on + strand, within CA265_RS24360 at 5933.016 kb on - strand, within CA265_RS24360 at 5933.041 kb on - strand, within CA265_RS24360 at 5933.081 kb on + strand at 5933.082 kb on - strand at 5933.115 kb on + strand at 5933.147 kb on + strand, within CA265_RS24365 at 5933.199 kb on - strand, within CA265_RS24365 at 5933.204 kb on + strand, within CA265_RS24365 at 5933.204 kb on + strand, within CA265_RS24365 at 5933.231 kb on - strand, within CA265_RS24365 at 5933.241 kb on + strand, within CA265_RS24365 at 5933.242 kb on - strand, within CA265_RS24365 at 5933.244 kb on - strand, within CA265_RS24365 at 5933.244 kb on - strand, within CA265_RS24365 at 5933.408 kb on + strand, within CA265_RS24365 at 5933.408 kb on + strand, within CA265_RS24365 at 5933.408 kb on + strand, within CA265_RS24365 at 5933.491 kb on + strand at 5933.492 kb on - strand at 5933.660 kb on - strand, within CA265_RS24370 at 5933.989 kb on - strand, within CA265_RS24370 at 5934.012 kb on - strand, within CA265_RS24370 at 5934.026 kb on - strand, within CA265_RS24370 at 5934.176 kb on + strand at 5934.203 kb on + strand at 5934.551 kb on + strand at 5934.609 kb on - strand, within CA265_RS24380 at 5934.727 kb on + strand, within CA265_RS24380 at 5934.777 kb on + strand, within CA265_RS24380 at 5934.778 kb on - strand, within CA265_RS24380 at 5934.827 kb on - strand, within CA265_RS24380 at 5934.827 kb on - strand, within CA265_RS24380 at 5934.848 kb on - strand, within CA265_RS24380 at 5934.886 kb on + strand, within CA265_RS24380 at 5934.887 kb on - strand, within CA265_RS24380 at 5934.890 kb on + strand, within CA265_RS24380 at 5934.891 kb on - strand, within CA265_RS24380 at 5934.891 kb on - strand, within CA265_RS24380 at 5934.933 kb on + strand, within CA265_RS24380 at 5935.080 kb on + strand at 5935.084 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chloramphenicol 0.005 mg/ml remove 5,932,584 + -0.3 5,932,584 + -0.2 5,932,617 + -0.2 5,932,617 + -1.4 5,932,618 - -0.0 5,932,717 + CA265_RS24360 0.21 -0.4 5,932,718 - CA265_RS24360 0.21 +0.4 5,932,783 + CA265_RS24360 0.35 -0.7 5,932,793 - CA265_RS24360 0.37 +0.9 5,932,851 - CA265_RS24360 0.49 +0.7 5,932,851 - CA265_RS24360 0.49 +0.9 5,932,888 + CA265_RS24360 0.57 -1.9 5,932,962 + CA265_RS24360 0.73 -0.9 5,933,016 - CA265_RS24360 0.84 -1.7 5,933,041 - CA265_RS24360 0.90 -0.5 5,933,081 + +2.1 5,933,082 - +1.0 5,933,115 + -0.5 5,933,147 + CA265_RS24365 0.14 +0.3 5,933,199 - CA265_RS24365 0.27 +0.2 5,933,204 + CA265_RS24365 0.28 -1.1 5,933,204 + CA265_RS24365 0.28 -1.7 5,933,231 - CA265_RS24365 0.35 -0.3 5,933,241 + CA265_RS24365 0.38 +0.4 5,933,242 - CA265_RS24365 0.38 +0.0 5,933,244 - CA265_RS24365 0.39 +0.6 5,933,244 - CA265_RS24365 0.39 +1.0 5,933,408 + CA265_RS24365 0.82 -0.5 5,933,408 + CA265_RS24365 0.82 +0.8 5,933,408 + CA265_RS24365 0.82 -0.7 5,933,491 + -0.0 5,933,492 - +0.0 5,933,660 - CA265_RS24370 0.23 +0.5 5,933,989 - CA265_RS24370 0.79 +0.2 5,934,012 - CA265_RS24370 0.83 +1.0 5,934,026 - CA265_RS24370 0.85 +0.2 5,934,176 + +0.5 5,934,203 + -1.6 5,934,551 + -0.0 5,934,609 - CA265_RS24380 0.11 +0.3 5,934,727 + CA265_RS24380 0.31 -1.7 5,934,777 + CA265_RS24380 0.40 -0.5 5,934,778 - CA265_RS24380 0.40 +0.4 5,934,827 - CA265_RS24380 0.49 +0.2 5,934,827 - CA265_RS24380 0.49 +0.7 5,934,848 - CA265_RS24380 0.52 -1.0 5,934,886 + CA265_RS24380 0.59 +1.6 5,934,887 - CA265_RS24380 0.59 -1.4 5,934,890 + CA265_RS24380 0.60 +0.6 5,934,891 - CA265_RS24380 0.60 +0.0 5,934,891 - CA265_RS24380 0.60 -0.8 5,934,933 + CA265_RS24380 0.67 -0.3 5,935,080 + +0.9 5,935,084 - +0.2
Or see this region's nucleotide sequence