Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS21195

Experiment: R2A with Chloramphenicol 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chloramphenicol 0.005 mg/ml
5,217,055	-		CA265_RS21185	0.82	-2.6
5,217,061	+		CA265_RS21185	0.82	-1.4
5,217,062	-		CA265_RS21185	0.82	-2.6
5,217,096	-		CA265_RS21185	0.84	-2.2
5,217,099	+		CA265_RS21185	0.85	-0.6
5,217,109	-		CA265_RS21185	0.85	-0.6
5,217,291	-				-2.0
5,217,347	-				+0.5
5,217,378	+				+0.0
5,217,383	-				+0.9
5,217,397	-				-1.0
5,217,437	+				+0.4
5,217,454	+				-0.2
5,217,474	+				-0.6
5,217,500	+		CA265_RS21190	0.11	-0.9
5,217,533	-		CA265_RS21190	0.17	+0.2
5,217,533	-		CA265_RS21190	0.17	-0.4
5,217,587	-				+1.4
5,217,596	+		CA265_RS21190	0.30	+1.1
5,217,662	+		CA265_RS21190	0.42	+0.3
5,217,662	+		CA265_RS21190	0.42	+0.7
5,217,662	+		CA265_RS21190	0.42	+0.0
5,217,695	+		CA265_RS21190	0.49	-0.4
5,217,703	+		CA265_RS21190	0.50	+0.3
5,217,703	+		CA265_RS21190	0.50	-0.2
5,217,707	-		CA265_RS21190	0.51	-0.5
5,217,715	-		CA265_RS21190	0.53	+0.6
5,217,717	-		CA265_RS21190	0.53	+0.7
5,217,783	+		CA265_RS21190	0.66	-0.5
5,217,788	+		CA265_RS21190	0.67	-0.2
5,217,789	-		CA265_RS21190	0.67	+1.7
5,217,841	-		CA265_RS21190	0.77	-0.1
5,217,844	+		CA265_RS21190	0.78	+0.6
5,217,845	-		CA265_RS21190	0.78	+1.4
5,217,901	+		CA265_RS21190	0.89	-1.3
5,217,924	+				+0.0
5,217,933	+				+0.9
5,217,933	+				-0.0
5,217,955	-				-0.1
5,218,008	+				+1.1
5,218,008	+				-0.8
5,218,121	-				-1.0
5,218,165	+				-1.9
5,218,194	+				-2.0
5,218,210	+				+1.9
5,218,221	+		CA265_RS21195	0.10	-0.1
5,218,223	+		CA265_RS21195	0.10	-2.4
5,218,224	-		CA265_RS21195	0.10	+0.0
5,218,358	-		CA265_RS21195	0.18	+0.4
5,218,371	-		CA265_RS21195	0.19	-1.3
5,218,371	-		CA265_RS21195	0.19	-0.9
5,218,406	-		CA265_RS21195	0.21	-2.1
5,218,406	-		CA265_RS21195	0.21	-0.5
5,218,490	+		CA265_RS21195	0.27	-0.1
5,218,503	-		CA265_RS21195	0.27	-0.6
5,218,516	+		CA265_RS21195	0.28	-1.1
5,218,529	-		CA265_RS21195	0.29	-1.3
5,218,529	-		CA265_RS21195	0.29	-0.4
5,218,684	-		CA265_RS21195	0.38	-0.5
5,218,684	-		CA265_RS21195	0.38	-0.7
5,218,685	+		CA265_RS21195	0.38	+0.5
5,218,686	-		CA265_RS21195	0.38	+0.4
5,218,745	-		CA265_RS21195	0.42	-0.3
5,218,780	+		CA265_RS21195	0.44	+0.0
5,218,832	-		CA265_RS21195	0.47	+0.3
5,218,838	-		CA265_RS21195	0.48	-0.2
5,218,875	+		CA265_RS21195	0.50	-0.3
5,218,876	-		CA265_RS21195	0.50	-0.3
5,218,889	-		CA265_RS21195	0.51	-1.7
5,218,900	+		CA265_RS21195	0.51	-0.7
5,218,915	-		CA265_RS21195	0.52	-0.3
5,218,931	-		CA265_RS21195	0.53	-2.9
5,218,964	-		CA265_RS21195	0.55	-0.1
5,218,976	-		CA265_RS21195	0.56	+0.3
5,218,996	+		CA265_RS21195	0.57	-0.4
5,218,997	-		CA265_RS21195	0.57	+0.2
5,219,000	-		CA265_RS21195	0.58	-0.4
5,219,014	+		CA265_RS21195	0.58	-0.7
5,219,087	-		CA265_RS21195	0.63	+1.1
5,219,087	-		CA265_RS21195	0.63	+0.7
5,219,087	-		CA265_RS21195	0.63	-2.0
5,219,107	+		CA265_RS21195	0.64	-1.0
5,219,108	-		CA265_RS21195	0.64	+0.9
5,219,123	+		CA265_RS21195	0.65	-1.4
5,219,178	+		CA265_RS21195	0.68	-0.2
5,219,178	+		CA265_RS21195	0.68	+0.1
5,219,181	+		CA265_RS21195	0.69	-0.2
5,219,182	-		CA265_RS21195	0.69	-0.2
5,219,244	+		CA265_RS21195	0.72	-0.8
5,219,260	+		CA265_RS21195	0.73	-0.4
5,219,261	-		CA265_RS21195	0.73	-0.1
5,219,365	-		CA265_RS21195	0.80	-0.7
5,219,367	-		CA265_RS21195	0.80	-1.0
5,219,388	+		CA265_RS21195	0.81	-0.1
5,219,389	-		CA265_RS21195	0.81	-1.0
5,219,495	+		CA265_RS21195	0.88	-0.1
5,219,513	-		CA265_RS21195	0.89	-1.1
5,219,638	+				+1.2
5,219,638	+				-1.3
5,219,639	-				-1.1
5,219,639	-				-0.1
5,219,639	-				-0.0
5,219,767	-				+0.3