Experiment: R2A with Chloramphenicol 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS20480 and CA265_RS20485 overlap by 11 nucleotides CA265_RS20485 and CA265_RS20490 overlap by 4 nucleotides
CA265_RS20480: CA265_RS20480 - restriction endonuclease subunit S, at 5,065,361 to 5,066,758
_RS20480
CA265_RS20485: CA265_RS20485 - hypothetical protein, at 5,066,748 to 5,068,364
_RS20485
CA265_RS20490: CA265_RS20490 - hypothetical protein, at 5,068,361 to 5,069,899
_RS20490
Position (kb) 5066
5067
5068
5069 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5065.802 kb on - strand, within CA265_RS20480 at 5065.802 kb on - strand, within CA265_RS20480 at 5065.807 kb on - strand, within CA265_RS20480 at 5065.807 kb on - strand, within CA265_RS20480 at 5065.914 kb on - strand, within CA265_RS20480 at 5065.960 kb on + strand, within CA265_RS20480 at 5065.961 kb on - strand, within CA265_RS20480 at 5065.961 kb on - strand, within CA265_RS20480 at 5065.970 kb on + strand, within CA265_RS20480 at 5065.970 kb on + strand, within CA265_RS20480 at 5065.970 kb on + strand, within CA265_RS20480 at 5065.970 kb on + strand, within CA265_RS20480 at 5065.970 kb on + strand, within CA265_RS20480 at 5065.970 kb on + strand, within CA265_RS20480 at 5065.970 kb on + strand, within CA265_RS20480 at 5065.971 kb on - strand, within CA265_RS20480 at 5065.971 kb on - strand, within CA265_RS20480 at 5065.989 kb on + strand, within CA265_RS20480 at 5066.024 kb on + strand, within CA265_RS20480 at 5066.025 kb on - strand, within CA265_RS20480 at 5066.084 kb on - strand, within CA265_RS20480 at 5066.183 kb on - strand, within CA265_RS20480 at 5066.185 kb on + strand, within CA265_RS20480 at 5066.236 kb on + strand, within CA265_RS20480 at 5066.250 kb on + strand, within CA265_RS20480 at 5066.250 kb on + strand, within CA265_RS20480 at 5066.261 kb on - strand, within CA265_RS20480 at 5066.268 kb on + strand, within CA265_RS20480 at 5066.300 kb on + strand, within CA265_RS20480 at 5066.301 kb on - strand, within CA265_RS20480 at 5066.326 kb on + strand, within CA265_RS20480 at 5066.357 kb on - strand, within CA265_RS20480 at 5066.390 kb on - strand, within CA265_RS20480 at 5066.433 kb on - strand, within CA265_RS20480 at 5066.545 kb on - strand, within CA265_RS20480 at 5066.627 kb on - strand at 5066.658 kb on + strand at 5066.674 kb on - strand at 5066.779 kb on - strand at 5066.780 kb on + strand at 5066.831 kb on + strand at 5066.835 kb on - strand at 5066.844 kb on + strand at 5066.844 kb on + strand at 5066.894 kb on + strand at 5066.920 kb on + strand, within CA265_RS20485 at 5066.920 kb on + strand, within CA265_RS20485 at 5066.974 kb on + strand, within CA265_RS20485 at 5066.975 kb on - strand, within CA265_RS20485 at 5066.988 kb on + strand, within CA265_RS20485 at 5066.989 kb on - strand, within CA265_RS20485 at 5066.989 kb on - strand, within CA265_RS20485 at 5066.989 kb on - strand, within CA265_RS20485 at 5067.047 kb on - strand, within CA265_RS20485 at 5067.093 kb on + strand, within CA265_RS20485 at 5067.094 kb on - strand, within CA265_RS20485 at 5067.094 kb on - strand, within CA265_RS20485 at 5067.096 kb on + strand, within CA265_RS20485 at 5067.160 kb on + strand, within CA265_RS20485 at 5067.161 kb on - strand, within CA265_RS20485 at 5067.190 kb on + strand, within CA265_RS20485 at 5067.221 kb on + strand, within CA265_RS20485 at 5067.266 kb on - strand, within CA265_RS20485 at 5067.334 kb on + strand, within CA265_RS20485 at 5067.335 kb on - strand, within CA265_RS20485 at 5067.428 kb on + strand, within CA265_RS20485 at 5067.429 kb on - strand, within CA265_RS20485 at 5067.433 kb on + strand, within CA265_RS20485 at 5067.433 kb on + strand, within CA265_RS20485 at 5067.434 kb on - strand, within CA265_RS20485 at 5067.468 kb on - strand, within CA265_RS20485 at 5067.595 kb on + strand, within CA265_RS20485 at 5067.596 kb on - strand, within CA265_RS20485 at 5067.599 kb on + strand, within CA265_RS20485 at 5067.601 kb on + strand, within CA265_RS20485 at 5067.602 kb on - strand, within CA265_RS20485 at 5067.624 kb on + strand, within CA265_RS20485 at 5067.625 kb on - strand, within CA265_RS20485 at 5067.626 kb on + strand, within CA265_RS20485 at 5067.626 kb on + strand, within CA265_RS20485 at 5067.627 kb on - strand, within CA265_RS20485 at 5067.653 kb on - strand, within CA265_RS20485 at 5067.679 kb on + strand, within CA265_RS20485 at 5067.695 kb on - strand, within CA265_RS20485 at 5067.751 kb on + strand, within CA265_RS20485 at 5067.782 kb on - strand, within CA265_RS20485 at 5067.816 kb on + strand, within CA265_RS20485 at 5067.834 kb on - strand, within CA265_RS20485 at 5067.860 kb on - strand, within CA265_RS20485 at 5067.860 kb on - strand, within CA265_RS20485 at 5067.926 kb on - strand, within CA265_RS20485 at 5067.934 kb on - strand, within CA265_RS20485 at 5067.986 kb on - strand, within CA265_RS20485 at 5067.986 kb on - strand, within CA265_RS20485 at 5067.986 kb on - strand, within CA265_RS20485 at 5068.179 kb on - strand, within CA265_RS20485 at 5068.238 kb on + strand at 5068.238 kb on + strand at 5068.239 kb on - strand at 5068.239 kb on - strand at 5068.348 kb on + strand at 5068.348 kb on + strand at 5068.348 kb on + strand at 5068.383 kb on + strand at 5068.441 kb on + strand at 5068.441 kb on + strand at 5068.442 kb on - strand at 5068.445 kb on - strand at 5068.452 kb on + strand at 5068.481 kb on - strand at 5068.500 kb on + strand at 5068.544 kb on - strand, within CA265_RS20490 at 5068.555 kb on - strand, within CA265_RS20490 at 5068.603 kb on + strand, within CA265_RS20490 at 5068.667 kb on - strand, within CA265_RS20490 at 5068.676 kb on + strand, within CA265_RS20490 at 5068.677 kb on - strand, within CA265_RS20490 at 5068.677 kb on - strand, within CA265_RS20490 at 5068.805 kb on - strand, within CA265_RS20490 at 5068.805 kb on - strand, within CA265_RS20490 at 5068.805 kb on - strand, within CA265_RS20490 at 5068.814 kb on - strand, within CA265_RS20490 at 5068.831 kb on - strand, within CA265_RS20490 at 5068.850 kb on + strand, within CA265_RS20490 at 5069.017 kb on + strand, within CA265_RS20490 at 5069.021 kb on - strand, within CA265_RS20490 at 5069.034 kb on + strand, within CA265_RS20490 at 5069.062 kb on - strand, within CA265_RS20490 at 5069.130 kb on + strand, within CA265_RS20490 at 5069.131 kb on - strand, within CA265_RS20490 at 5069.199 kb on + strand, within CA265_RS20490 at 5069.200 kb on - strand, within CA265_RS20490 at 5069.274 kb on + strand, within CA265_RS20490 at 5069.308 kb on - strand, within CA265_RS20490 at 5069.314 kb on - strand, within CA265_RS20490 at 5069.324 kb on - strand, within CA265_RS20490 at 5069.343 kb on + strand, within CA265_RS20490
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chloramphenicol 0.005 mg/ml remove 5,065,802 - CA265_RS20480 0.32 -0.7 5,065,802 - CA265_RS20480 0.32 +0.7 5,065,807 - CA265_RS20480 0.32 +0.5 5,065,807 - CA265_RS20480 0.32 -0.2 5,065,914 - CA265_RS20480 0.40 -0.4 5,065,960 + CA265_RS20480 0.43 +0.2 5,065,961 - CA265_RS20480 0.43 +0.2 5,065,961 - CA265_RS20480 0.43 -0.3 5,065,970 + CA265_RS20480 0.44 -0.1 5,065,970 + CA265_RS20480 0.44 +0.4 5,065,970 + CA265_RS20480 0.44 -0.4 5,065,970 + CA265_RS20480 0.44 -0.4 5,065,970 + CA265_RS20480 0.44 +0.8 5,065,970 + CA265_RS20480 0.44 -0.5 5,065,970 + CA265_RS20480 0.44 +0.6 5,065,971 - CA265_RS20480 0.44 -0.0 5,065,971 - CA265_RS20480 0.44 +0.8 5,065,989 + CA265_RS20480 0.45 -0.0 5,066,024 + CA265_RS20480 0.47 +0.2 5,066,025 - CA265_RS20480 0.47 +0.4 5,066,084 - CA265_RS20480 0.52 -0.9 5,066,183 - CA265_RS20480 0.59 -0.0 5,066,185 + CA265_RS20480 0.59 +1.4 5,066,236 + CA265_RS20480 0.63 -0.7 5,066,250 + CA265_RS20480 0.64 -0.2 5,066,250 + CA265_RS20480 0.64 +0.2 5,066,261 - CA265_RS20480 0.64 +1.0 5,066,268 + CA265_RS20480 0.65 -0.1 5,066,300 + CA265_RS20480 0.67 -0.3 5,066,301 - CA265_RS20480 0.67 +0.3 5,066,326 + CA265_RS20480 0.69 +0.6 5,066,357 - CA265_RS20480 0.71 +0.3 5,066,390 - CA265_RS20480 0.74 -0.2 5,066,433 - CA265_RS20480 0.77 -0.2 5,066,545 - CA265_RS20480 0.85 +0.3 5,066,627 - +0.5 5,066,658 + -1.0 5,066,674 - +0.1 5,066,779 - -1.2 5,066,780 + +0.3 5,066,831 + +0.2 5,066,835 - +0.6 5,066,844 + +0.2 5,066,844 + -0.2 5,066,894 + +0.1 5,066,920 + CA265_RS20485 0.11 +0.1 5,066,920 + CA265_RS20485 0.11 +0.2 5,066,974 + CA265_RS20485 0.14 +1.7 5,066,975 - CA265_RS20485 0.14 +1.0 5,066,988 + CA265_RS20485 0.15 -1.9 5,066,989 - CA265_RS20485 0.15 -0.5 5,066,989 - CA265_RS20485 0.15 +0.0 5,066,989 - CA265_RS20485 0.15 -0.4 5,067,047 - CA265_RS20485 0.18 +1.4 5,067,093 + CA265_RS20485 0.21 -0.7 5,067,094 - CA265_RS20485 0.21 +0.7 5,067,094 - CA265_RS20485 0.21 -0.6 5,067,096 + CA265_RS20485 0.22 -0.0 5,067,160 + CA265_RS20485 0.25 -0.3 5,067,161 - CA265_RS20485 0.26 +1.1 5,067,190 + CA265_RS20485 0.27 -0.9 5,067,221 + CA265_RS20485 0.29 -2.0 5,067,266 - CA265_RS20485 0.32 -0.2 5,067,334 + CA265_RS20485 0.36 -0.2 5,067,335 - CA265_RS20485 0.36 +0.0 5,067,428 + CA265_RS20485 0.42 -0.0 5,067,429 - CA265_RS20485 0.42 -0.3 5,067,433 + CA265_RS20485 0.42 -0.3 5,067,433 + CA265_RS20485 0.42 -1.8 5,067,434 - CA265_RS20485 0.42 -0.0 5,067,468 - CA265_RS20485 0.45 -0.9 5,067,595 + CA265_RS20485 0.52 +0.5 5,067,596 - CA265_RS20485 0.52 -0.2 5,067,599 + CA265_RS20485 0.53 -0.3 5,067,601 + CA265_RS20485 0.53 +0.5 5,067,602 - CA265_RS20485 0.53 +1.0 5,067,624 + CA265_RS20485 0.54 +1.0 5,067,625 - CA265_RS20485 0.54 -0.3 5,067,626 + CA265_RS20485 0.54 -1.0 5,067,626 + CA265_RS20485 0.54 -0.0 5,067,627 - CA265_RS20485 0.54 +0.3 5,067,653 - CA265_RS20485 0.56 +0.6 5,067,679 + CA265_RS20485 0.58 -0.4 5,067,695 - CA265_RS20485 0.59 -2.0 5,067,751 + CA265_RS20485 0.62 +0.4 5,067,782 - CA265_RS20485 0.64 -1.4 5,067,816 + CA265_RS20485 0.66 +2.0 5,067,834 - CA265_RS20485 0.67 +0.7 5,067,860 - CA265_RS20485 0.69 +0.6 5,067,860 - CA265_RS20485 0.69 +0.1 5,067,926 - CA265_RS20485 0.73 +1.2 5,067,934 - CA265_RS20485 0.73 +0.8 5,067,986 - CA265_RS20485 0.77 +0.4 5,067,986 - CA265_RS20485 0.77 -0.4 5,067,986 - CA265_RS20485 0.77 +0.1 5,068,179 - CA265_RS20485 0.88 +0.4 5,068,238 + +0.6 5,068,238 + +0.4 5,068,239 - -1.0 5,068,239 - +0.5 5,068,348 + -1.1 5,068,348 + +0.1 5,068,348 + +0.6 5,068,383 + +0.2 5,068,441 + +0.0 5,068,441 + +1.4 5,068,442 - +0.0 5,068,445 - -0.2 5,068,452 + -0.4 5,068,481 - +0.1 5,068,500 + +0.4 5,068,544 - CA265_RS20490 0.12 +0.3 5,068,555 - CA265_RS20490 0.13 +0.4 5,068,603 + CA265_RS20490 0.16 +0.4 5,068,667 - CA265_RS20490 0.20 +0.9 5,068,676 + CA265_RS20490 0.20 -1.9 5,068,677 - CA265_RS20490 0.21 -0.4 5,068,677 - CA265_RS20490 0.21 +0.0 5,068,805 - CA265_RS20490 0.29 -1.8 5,068,805 - CA265_RS20490 0.29 +0.9 5,068,805 - CA265_RS20490 0.29 +0.2 5,068,814 - CA265_RS20490 0.29 +0.4 5,068,831 - CA265_RS20490 0.31 -0.2 5,068,850 + CA265_RS20490 0.32 -0.7 5,069,017 + CA265_RS20490 0.43 -0.8 5,069,021 - CA265_RS20490 0.43 -0.2 5,069,034 + CA265_RS20490 0.44 +0.9 5,069,062 - CA265_RS20490 0.46 -0.1 5,069,130 + CA265_RS20490 0.50 -0.8 5,069,131 - CA265_RS20490 0.50 +0.3 5,069,199 + CA265_RS20490 0.54 -0.8 5,069,200 - CA265_RS20490 0.55 -0.1 5,069,274 + CA265_RS20490 0.59 +0.1 5,069,308 - CA265_RS20490 0.62 -0.2 5,069,314 - CA265_RS20490 0.62 +0.2 5,069,324 - CA265_RS20490 0.63 +0.8 5,069,343 + CA265_RS20490 0.64 -0.6
Or see this region's nucleotide sequence