Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS19990

Experiment: R2A with Chloramphenicol 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chloramphenicol 0.005 mg/ml
4,942,947	-				-0.0
4,943,005	+				+0.6
4,943,009	-				+0.4
4,943,036	-				+0.6
4,943,132	+		CA265_RS19980	0.29	+0.4
4,943,133	-		CA265_RS19980	0.29	-1.4
4,943,158	-		CA265_RS19980	0.35	-0.4
4,943,201	+		CA265_RS19980	0.45	-0.1
4,943,201	+		CA265_RS19980	0.45	-0.5
4,943,285	+		CA265_RS19980	0.64	-1.0
4,943,285	+		CA265_RS19980	0.64	+0.4
4,943,290	+		CA265_RS19980	0.65	-0.4
4,943,348	+		CA265_RS19980	0.79	-2.0
4,943,354	+		CA265_RS19980	0.80	+1.0
4,943,354	+		CA265_RS19980	0.80	-0.4
4,943,369	+		CA265_RS19980	0.83	+0.5
4,943,370	-		CA265_RS19980	0.84	-0.2
4,943,370	-		CA265_RS19980	0.84	-0.1
4,943,413	-				+0.4
4,943,429	+				-0.5
4,943,430	-				-1.2
4,943,430	-				+0.5
4,943,431	+				-0.1
4,943,451	+				+2.0
4,943,472	-		CA265_RS19985	0.12	+0.5
4,943,490	+		CA265_RS19985	0.16	+0.2
4,943,491	-		CA265_RS19985	0.17	+0.0
4,943,491	-		CA265_RS19985	0.17	-0.2
4,943,511	-		CA265_RS19985	0.22	-0.9
4,943,514	+		CA265_RS19985	0.23	+0.2
4,943,515	-		CA265_RS19985	0.23	+0.2
4,943,515	-		CA265_RS19985	0.23	-0.4
4,943,546	-		CA265_RS19985	0.31	-1.0
4,943,552	+		CA265_RS19985	0.33	+1.0
4,943,552	+		CA265_RS19985	0.33	-0.2
4,943,552	+		CA265_RS19985	0.33	-0.2
4,943,585	+		CA265_RS19985	0.42	+1.4
4,943,589	+		CA265_RS19985	0.43	-1.3
4,943,610	-		CA265_RS19985	0.48	-0.9
4,943,661	+		CA265_RS19985	0.62	+0.5
4,943,662	-		CA265_RS19985	0.62	-0.7
4,943,662	-		CA265_RS19985	0.62	-0.8
4,943,662	-		CA265_RS19985	0.62	-0.6
4,943,728	-		CA265_RS19985	0.79	-0.0
4,943,805	+				+0.4
4,943,817	+				-0.0
4,943,848	+				+0.7
4,943,860	+				-0.3
4,943,885	-				+0.3
4,943,915	+		CA265_RS19990	0.21	-1.0
4,943,940	+		CA265_RS19990	0.30	+0.1
4,943,976	-		CA265_RS19990	0.44	-1.0
4,943,985	-		CA265_RS19990	0.47	-1.3
4,944,015	+		CA265_RS19990	0.58	+0.0
4,944,103	-				-0.8
4,944,116	+				-0.7
4,944,117	-				-0.3
4,944,158	+				+0.8
4,944,158	+				+0.1
4,944,163	+				+0.7
4,944,171	+				-0.5
4,944,179	+				-0.5
4,944,179	+				+0.8
4,944,183	+				+0.3
4,944,183	+				-1.7
4,944,194	+				+0.3
4,944,201	-				-0.8
4,944,298	+				-0.3
4,944,301	+				-1.0
4,944,351	+		CA265_RS19995	0.14	+1.4
4,944,373	+		CA265_RS19995	0.17	-0.5
4,944,373	+		CA265_RS19995	0.17	+0.2
4,944,565	-		CA265_RS19995	0.35	-0.6
4,944,565	-		CA265_RS19995	0.35	-1.9
4,944,565	-		CA265_RS19995	0.35	-0.0
4,944,568	+		CA265_RS19995	0.35	+0.7
4,944,569	-		CA265_RS19995	0.35	+0.0
4,944,620	-		CA265_RS19995	0.40	-0.1
4,944,732	-		CA265_RS19995	0.51	+0.6
4,944,735	+		CA265_RS19995	0.51	+2.8
4,944,736	-		CA265_RS19995	0.51	-1.4
4,944,779	+		CA265_RS19995	0.55	-1.1
4,944,784	+		CA265_RS19995	0.56	-0.5
4,944,808	+		CA265_RS19995	0.58	-0.4
4,944,808	+		CA265_RS19995	0.58	+0.0
4,944,821	-		CA265_RS19995	0.59	-0.4
4,944,891	+		CA265_RS19995	0.66	+0.5
4,944,919	-		CA265_RS19995	0.69	-0.9
4,944,929	-		CA265_RS19995	0.70	+0.7
4,944,929	-		CA265_RS19995	0.70	+1.5
4,944,940	+		CA265_RS19995	0.71	-0.5
4,944,941	-		CA265_RS19995	0.71	+0.1
4,944,997	-		CA265_RS19995	0.76	+0.2
4,944,997	-		CA265_RS19995	0.76	-1.4
4,945,010	+		CA265_RS19995	0.77	-1.0
4,945,010	+		CA265_RS19995	0.77	+1.0
4,945,022	-		CA265_RS19995	0.78	-0.8
4,945,084	-		CA265_RS19995	0.84	-0.5
4,945,103	+		CA265_RS19995	0.86	-0.0
4,945,103	+		CA265_RS19995	0.86	+0.3
4,945,104	-		CA265_RS19995	0.86	+0.5
4,945,104	-		CA265_RS19995	0.86	-0.0
4,945,122	+		CA265_RS19995	0.88	+0.2
4,945,123	-		CA265_RS19995	0.88	-0.1
4,945,125	-		CA265_RS19995	0.88	-0.2