Experiment: R2A with Chloramphenicol 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS19160 and CA265_RS19165 are separated by 149 nucleotides CA265_RS19165 and CA265_RS19170 are separated by 62 nucleotides
CA265_RS19160: CA265_RS19160 - glutamine--fructose-6-phosphate transaminase (isomerizing), at 4,761,105 to 4,762,943
_RS19160
CA265_RS19165: CA265_RS19165 - serine hydroxymethyltransferase, at 4,763,093 to 4,764,364
_RS19165
CA265_RS19170: CA265_RS19170 - chromosome segregation protein ScpA, at 4,764,427 to 4,765,170
_RS19170
Position (kb) 4763
4764
4765 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4762.974 kb on - strand at 4762.974 kb on - strand at 4763.016 kb on + strand at 4763.036 kb on + strand at 4763.048 kb on + strand at 4763.086 kb on + strand at 4763.088 kb on + strand at 4763.088 kb on + strand at 4763.088 kb on + strand at 4763.094 kb on + strand at 4763.094 kb on + strand at 4763.094 kb on + strand at 4763.095 kb on - strand at 4763.117 kb on + strand at 4763.251 kb on + strand, within CA265_RS19165 at 4763.306 kb on - strand at 4763.407 kb on + strand, within CA265_RS19165 at 4763.488 kb on - strand, within CA265_RS19165 at 4763.488 kb on - strand, within CA265_RS19165 at 4763.722 kb on + strand, within CA265_RS19165 at 4763.960 kb on + strand, within CA265_RS19165 at 4764.117 kb on - strand, within CA265_RS19165 at 4764.260 kb on + strand at 4764.269 kb on - strand at 4764.272 kb on + strand at 4764.335 kb on - strand at 4764.418 kb on + strand at 4764.448 kb on - strand at 4764.540 kb on + strand, within CA265_RS19170 at 4764.541 kb on - strand, within CA265_RS19170 at 4764.583 kb on - strand, within CA265_RS19170 at 4764.586 kb on - strand, within CA265_RS19170 at 4764.630 kb on + strand, within CA265_RS19170 at 4764.631 kb on - strand, within CA265_RS19170 at 4764.632 kb on + strand, within CA265_RS19170 at 4764.633 kb on - strand, within CA265_RS19170 at 4764.651 kb on + strand, within CA265_RS19170 at 4764.680 kb on + strand, within CA265_RS19170 at 4764.717 kb on + strand, within CA265_RS19170 at 4764.719 kb on + strand, within CA265_RS19170 at 4764.789 kb on + strand, within CA265_RS19170 at 4764.790 kb on - strand, within CA265_RS19170 at 4764.874 kb on + strand, within CA265_RS19170 at 4764.904 kb on - strand, within CA265_RS19170 at 4764.925 kb on + strand, within CA265_RS19170 at 4765.007 kb on - strand, within CA265_RS19170 at 4765.032 kb on + strand, within CA265_RS19170 at 4765.033 kb on - strand, within CA265_RS19170 at 4765.035 kb on - strand, within CA265_RS19170 at 4765.035 kb on - strand, within CA265_RS19170 at 4765.083 kb on + strand, within CA265_RS19170 at 4765.084 kb on - strand, within CA265_RS19170 at 4765.292 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chloramphenicol 0.005 mg/ml remove 4,762,974 - +3.2 4,762,974 - -0.4 4,763,016 + +0.3 4,763,036 + -0.5 4,763,048 + +0.5 4,763,086 + +2.9 4,763,088 + +0.8 4,763,088 + +0.4 4,763,088 + +1.0 4,763,094 + +0.3 4,763,094 + -0.2 4,763,094 + +0.7 4,763,095 - +0.3 4,763,117 + -0.1 4,763,251 + CA265_RS19165 0.12 +0.7 4,763,306 - +0.9 4,763,407 + CA265_RS19165 0.25 -2.6 4,763,488 - CA265_RS19165 0.31 -0.3 4,763,488 - CA265_RS19165 0.31 -1.6 4,763,722 + CA265_RS19165 0.49 -1.2 4,763,960 + CA265_RS19165 0.68 -1.6 4,764,117 - CA265_RS19165 0.81 +0.6 4,764,260 + -1.0 4,764,269 - +0.6 4,764,272 + +1.3 4,764,335 - +0.9 4,764,418 + +0.9 4,764,448 - +0.3 4,764,540 + CA265_RS19170 0.15 +0.3 4,764,541 - CA265_RS19170 0.15 -0.4 4,764,583 - CA265_RS19170 0.21 -0.4 4,764,586 - CA265_RS19170 0.21 -0.1 4,764,630 + CA265_RS19170 0.27 +0.5 4,764,631 - CA265_RS19170 0.27 +0.0 4,764,632 + CA265_RS19170 0.28 +1.6 4,764,633 - CA265_RS19170 0.28 +0.7 4,764,651 + CA265_RS19170 0.30 -0.1 4,764,680 + CA265_RS19170 0.34 +2.3 4,764,717 + CA265_RS19170 0.39 +0.8 4,764,719 + CA265_RS19170 0.39 +0.4 4,764,789 + CA265_RS19170 0.49 +0.6 4,764,790 - CA265_RS19170 0.49 -0.6 4,764,874 + CA265_RS19170 0.60 +0.1 4,764,904 - CA265_RS19170 0.64 +0.9 4,764,925 + CA265_RS19170 0.67 +0.5 4,765,007 - CA265_RS19170 0.78 -0.4 4,765,032 + CA265_RS19170 0.81 +0.6 4,765,033 - CA265_RS19170 0.81 +0.3 4,765,035 - CA265_RS19170 0.82 +0.2 4,765,035 - CA265_RS19170 0.82 +0.5 4,765,083 + CA265_RS19170 0.88 +1.1 4,765,084 - CA265_RS19170 0.88 +1.5 4,765,292 - +1.1
Or see this region's nucleotide sequence