Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS13295

Experiment: R2A with Chloramphenicol 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chloramphenicol 0.005 mg/ml
3,300,268	-		CA265_RS13285	0.70	-1.5
3,300,294	+		CA265_RS13285	0.72	-0.4
3,300,307	-		CA265_RS13285	0.73	+0.1
3,300,308	+		CA265_RS13285	0.73	+0.2
3,300,309	-		CA265_RS13285	0.73	+1.9
3,300,554	+				+0.3
3,300,555	-				+0.7
3,300,583	+				+0.2
3,300,583	+				+0.2
3,300,594	+				+0.7
3,300,620	-				-0.7
3,300,708	+				-0.3
3,300,708	+				-0.6
3,300,851	-				-0.6
3,300,874	-				-1.1
3,300,909	+				+0.5
3,300,909	+				+0.4
3,300,917	-				+0.8
3,300,961	+				-0.8
3,301,118	+				+0.0
3,301,124	+				-0.3
3,301,124	+				-0.2
3,301,124	+				-0.0
3,301,125	-				+0.6
3,301,229	-				-1.0
3,301,229	-				-0.2
3,301,229	-				-0.3
3,301,252	+				+0.1
3,301,253	-				-0.1
3,301,372	-				-0.4
3,301,382	-				-0.7
3,301,385	+				+0.8
3,301,385	+				+1.5
3,301,386	-				+0.2
3,301,386	-				+0.1
3,301,406	+				-0.0
3,301,474	-				-0.2
3,301,534	+		CA265_RS13295	0.11	-0.7
3,301,552	+		CA265_RS13295	0.12	-0.1
3,301,617	-		CA265_RS13295	0.15	-0.3
3,301,678	+		CA265_RS13295	0.17	-0.2
3,301,678	+		CA265_RS13295	0.17	+0.2
3,301,784	-		CA265_RS13295	0.21	-0.2
3,301,784	-		CA265_RS13295	0.21	-0.3
3,301,825	-		CA265_RS13295	0.23	-0.1
3,301,862	+		CA265_RS13295	0.25	-0.2
3,301,862	+		CA265_RS13295	0.25	+0.0
3,301,918	-		CA265_RS13295	0.27	+0.1
3,301,939	+		CA265_RS13295	0.28	+0.7
3,301,940	-		CA265_RS13295	0.28	+0.3
3,301,941	+		CA265_RS13295	0.28	+0.3
3,302,012	-		CA265_RS13295	0.31	-0.0
3,302,090	+		CA265_RS13295	0.34	-0.3
3,302,135	-		CA265_RS13295	0.36	+0.2
3,302,135	-		CA265_RS13295	0.36	+0.1
3,302,157	+		CA265_RS13295	0.36	-0.1
3,302,194	+		CA265_RS13295	0.38	+0.9
3,302,227	+		CA265_RS13295	0.39	+0.9
3,302,289	-		CA265_RS13295	0.42	+0.3
3,302,301	+		CA265_RS13295	0.42	+0.1
3,302,302	-		CA265_RS13295	0.42	+0.7
3,302,304	-		CA265_RS13295	0.42	-1.5
3,302,359	+		CA265_RS13295	0.44	+0.3
3,302,364	+		CA265_RS13295	0.45	+0.1
3,302,377	+		CA265_RS13295	0.45	-0.8
3,302,377	+		CA265_RS13295	0.45	-0.4
3,302,377	+		CA265_RS13295	0.45	-0.6
3,302,378	-		CA265_RS13295	0.45	+1.1
3,302,436	+		CA265_RS13295	0.48	+0.1
3,302,436	+		CA265_RS13295	0.48	+0.4
3,302,436	+		CA265_RS13295	0.48	-0.0
3,302,437	-		CA265_RS13295	0.48	+0.3
3,302,452	+		CA265_RS13295	0.48	-0.4
3,302,453	-		CA265_RS13295	0.48	-1.0
3,302,456	+		CA265_RS13295	0.48	-0.1
3,302,467	-		CA265_RS13295	0.49	-0.6
3,302,537	+		CA265_RS13295	0.52	+0.6
3,302,545	+		CA265_RS13295	0.52	+0.5
3,302,545	+		CA265_RS13295	0.52	-0.1
3,302,549	+		CA265_RS13295	0.52	-0.2
3,302,550	-		CA265_RS13295	0.52	-0.1
3,302,640	-		CA265_RS13295	0.56	+0.3
3,302,642	+		CA265_RS13295	0.56	-0.1
3,302,654	+		CA265_RS13295	0.56	-0.4
3,302,669	+		CA265_RS13295	0.57	+0.4
3,302,670	-		CA265_RS13295	0.57	-0.3
3,302,685	+		CA265_RS13295	0.58	+0.3
3,302,722	-		CA265_RS13295	0.59	+1.0
3,302,750	+		CA265_RS13295	0.60	-0.2
3,302,750	+		CA265_RS13295	0.60	+0.0
3,302,783	+		CA265_RS13295	0.62	+1.0
3,302,867	-		CA265_RS13295	0.65	+0.2
3,302,876	+		CA265_RS13295	0.65	+0.9
3,302,876	+		CA265_RS13295	0.65	-0.1
3,302,877	-		CA265_RS13295	0.65	+0.1
3,302,877	-		CA265_RS13295	0.65	-0.7
3,302,877	-		CA265_RS13295	0.65	-0.1
3,302,936	-		CA265_RS13295	0.68	+0.4
3,303,015	-		CA265_RS13295	0.71	-0.7
3,303,099	-		CA265_RS13295	0.74	+0.0
3,303,114	+		CA265_RS13295	0.75	+0.1
3,303,139	+		CA265_RS13295	0.76	+0.7
3,303,139	+		CA265_RS13295	0.76	-0.4
3,303,139	+		CA265_RS13295	0.76	-0.9
3,303,144	+		CA265_RS13295	0.76	+0.5
3,303,264	+		CA265_RS13295	0.81	-0.4
3,303,300	+		CA265_RS13295	0.82	-0.5
3,303,302	+		CA265_RS13295	0.82	+0.5
3,303,303	-		CA265_RS13295	0.82	-0.7
3,303,303	-		CA265_RS13295	0.82	-0.4
3,303,303	-		CA265_RS13295	0.82	-0.5
3,303,366	+		CA265_RS13295	0.85	+0.1
3,303,407	+		CA265_RS13295	0.87	+0.4
3,303,408	-		CA265_RS13295	0.87	-0.4
3,303,411	-		CA265_RS13295	0.87	-0.6
3,303,441	-		CA265_RS13295	0.88	-0.0
3,303,443	-		CA265_RS13295	0.88	-0.8
3,303,473	+		CA265_RS13295	0.89	-0.4
3,303,532	-				-0.1
3,303,533	+				-0.1
3,303,600	+				-0.1
3,303,601	-				-0.8
3,303,644	+				-0.3
3,303,677	+				+0.5
3,303,677	+				-0.1
3,303,692	+				+0.6
3,303,740	+				-0.4
3,303,761	+				+0.6
3,303,761	+				+0.4
3,303,762	-				+0.3
3,303,814	+				-0.9
3,303,853	-				+0.3
3,303,853	-				-0.5
3,303,911	-		CA265_RS13300	0.15	-0.9
3,303,972	+		CA265_RS13300	0.20	+0.4
3,304,024	+		CA265_RS13300	0.25	+0.5
3,304,024	+		CA265_RS13300	0.25	-1.1
3,304,024	+		CA265_RS13300	0.25	+0.3
3,304,025	-		CA265_RS13300	0.25	+0.1
3,304,025	-		CA265_RS13300	0.25	-0.3
3,304,025	-		CA265_RS13300	0.25	+0.3
3,304,025	-		CA265_RS13300	0.25	+0.3
3,304,025	-		CA265_RS13300	0.25	-0.5
3,304,029	-		CA265_RS13300	0.25	+0.5
3,304,038	+		CA265_RS13300	0.26	-0.2
3,304,038	+		CA265_RS13300	0.26	-1.6
3,304,038	+		CA265_RS13300	0.26	-0.6
3,304,039	-		CA265_RS13300	0.26	-0.3
3,304,039	-		CA265_RS13300	0.26	-0.6
3,304,039	-		CA265_RS13300	0.26	+1.0
3,304,043	-		CA265_RS13300	0.26	-0.5
3,304,043	-		CA265_RS13300	0.26	-0.1
3,304,043	-		CA265_RS13300	0.26	-1.1
3,304,057	-		CA265_RS13300	0.28	-1.2
3,304,057	-		CA265_RS13300	0.28	-1.0
3,304,182	+		CA265_RS13300	0.39	-0.0
3,304,228	-		CA265_RS13300	0.43	+0.7
3,304,300	+		CA265_RS13300	0.49	-0.3
3,304,498	+		CA265_RS13300	0.66	+0.2
3,304,498	+		CA265_RS13300	0.66	-0.0
3,304,499	-		CA265_RS13300	0.66	+0.4
3,304,499	-		CA265_RS13300	0.66	-0.0
3,304,499	-		CA265_RS13300	0.66	+0.5
3,304,499	-		CA265_RS13300	0.66	-0.0
3,304,499	-		CA265_RS13300	0.66	-0.5
3,304,502	-		CA265_RS13300	0.67	-0.3
3,304,529	+		CA265_RS13300	0.69	-0.3
3,304,530	-		CA265_RS13300	0.69	-0.6
3,304,568	-		CA265_RS13300	0.72	+0.2
3,304,575	-		CA265_RS13300	0.73	-0.3
3,304,605	-		CA265_RS13300	0.76	-0.6
3,304,608	-		CA265_RS13300	0.76	+0.5
3,304,651	-		CA265_RS13300	0.80	-0.6
3,304,693	-		CA265_RS13300	0.83	-1.0
3,304,693	-		CA265_RS13300	0.83	-1.6
3,304,709	+		CA265_RS13300	0.85	+0.1
3,304,709	+		CA265_RS13300	0.85	+0.7