Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS06295

Experiment: R2A with Chloramphenicol 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chloramphenicol 0.005 mg/ml
1,544,203	+		CA265_RS06285	0.51	-0.3
1,544,215	-		CA265_RS06285	0.52	-1.0
1,544,294	+		CA265_RS06285	0.64	+0.6
1,544,294	+		CA265_RS06285	0.64	+0.6
1,544,295	-		CA265_RS06285	0.64	-0.6
1,544,327	+		CA265_RS06285	0.68	-0.7
1,544,337	+		CA265_RS06285	0.70	-0.4
1,544,348	+		CA265_RS06285	0.71	-0.9
1,544,349	-		CA265_RS06285	0.71	-0.2
1,544,387	+		CA265_RS06285	0.77	-0.2
1,544,440	+		CA265_RS06285	0.84	+0.3
1,544,440	+		CA265_RS06285	0.84	-0.2
1,544,440	+		CA265_RS06285	0.84	-0.2
1,544,460	+		CA265_RS06285	0.87	+0.4
1,544,522	-				+0.3
1,544,541	+				+0.6
1,545,119	-		CA265_RS06290	0.89	-2.0
1,545,153	-				-3.1
1,545,180	+				-0.4
1,545,188	+				-2.1
1,545,189	-				-1.8
1,545,258	-				-0.7
1,545,281	+				-1.9
1,545,349	-				-1.1
1,545,402	+				-2.2
1,545,471	+		CA265_RS06295	0.12	-1.4
1,545,483	+		CA265_RS06295	0.13	-3.0
1,545,527	+		CA265_RS06295	0.14	-1.2
1,545,529	+		CA265_RS06295	0.15	-0.8
1,545,654	+		CA265_RS06295	0.20	-2.2
1,545,691	-		CA265_RS06295	0.21	-1.3
1,545,747	+		CA265_RS06295	0.24	-1.4
1,545,777	+		CA265_RS06295	0.25	-1.6
1,545,777	+		CA265_RS06295	0.25	-0.9
1,545,778	-		CA265_RS06295	0.25	-1.8
1,545,799	-		CA265_RS06295	0.26	-2.6
1,545,886	-		CA265_RS06295	0.30	-2.3
1,545,888	+		CA265_RS06295	0.30	-2.4
1,545,888	+		CA265_RS06295	0.30	-0.4
1,545,947	+		CA265_RS06295	0.32	-1.8
1,545,989	-		CA265_RS06295	0.34	+0.4
1,546,074	-		CA265_RS06295	0.37	-2.3
1,546,097	+		CA265_RS06295	0.38	-1.5
1,546,161	-		CA265_RS06295	0.41	-1.8
1,546,164	+		CA265_RS06295	0.41	-1.2
1,546,164	+		CA265_RS06295	0.41	-1.3
1,546,170	+		CA265_RS06295	0.41	-1.4
1,546,194	-		CA265_RS06295	0.42	-1.7
1,546,194	-		CA265_RS06295	0.42	-1.2
1,546,234	-		CA265_RS06295	0.44	-3.1
1,546,260	+		CA265_RS06295	0.45	-0.6
1,546,299	+		CA265_RS06295	0.47	-1.6
1,546,502	+		CA265_RS06295	0.55	-0.3
1,546,509	-		CA265_RS06295	0.56	-0.9
1,546,669	+		CA265_RS06295	0.62	-0.9
1,546,693	-		CA265_RS06295	0.63	-2.8
1,546,704	+		CA265_RS06295	0.64	-2.7
1,546,814	+		CA265_RS06295	0.69	-2.0
1,546,814	+		CA265_RS06295	0.69	-0.8
1,546,837	-		CA265_RS06295	0.69	-2.4
1,546,902	-		CA265_RS06295	0.72	-1.6
1,546,935	+		CA265_RS06295	0.74	-0.9
1,546,935	+		CA265_RS06295	0.74	-1.8
1,546,936	-		CA265_RS06295	0.74	-1.5
1,546,969	-		CA265_RS06295	0.75	-2.1
1,547,010	-		CA265_RS06295	0.77	-0.7
1,547,244	+		CA265_RS06295	0.87	-1.6
1,547,245	-		CA265_RS06295	0.87	-2.8
1,547,375	+				-4.0
1,547,474	-				-1.9
1,547,482	-				-1.5
1,547,487	+				-1.1
1,547,487	+				-2.3
1,547,669	+				+1.4
1,547,683	-				-0.0
1,547,686	-				-2.6
1,547,724	+				-0.8
1,547,725	-				+0.7
1,547,786	-				-1.5
1,547,786	-				+0.2
1,547,801	+				+0.4
1,547,801	+				+0.2
1,547,832	+				+0.6
1,547,933	-				-0.8
1,547,936	-				-2.9
1,547,951	-				-1.6
1,547,951	-				-0.2
1,547,991	-				-0.7
1,548,020	-				-0.9
1,548,020	-				-0.9
1,548,053	-		CA265_RS06300	0.12	+0.0
1,548,075	+		CA265_RS06300	0.14	-0.0
1,548,122	+		CA265_RS06300	0.18	-0.6
1,548,151	+		CA265_RS06300	0.21	+0.4
1,548,151	+		CA265_RS06300	0.21	+0.1
1,548,152	-		CA265_RS06300	0.21	-0.9
1,548,160	+		CA265_RS06300	0.22	-0.2
1,548,161	-		CA265_RS06300	0.22	+0.5
1,548,164	+		CA265_RS06300	0.22	+1.6
1,548,165	-		CA265_RS06300	0.22	-2.1
1,548,217	+		CA265_RS06300	0.27	+0.4
1,548,217	+		CA265_RS06300	0.27	+0.5
1,548,218	-		CA265_RS06300	0.27	-0.9
1,548,249	+		CA265_RS06300	0.30	-0.7
1,548,249	+		CA265_RS06300	0.30	-1.0
1,548,250	-		CA265_RS06300	0.30	-0.2
1,548,276	+		CA265_RS06300	0.33	-0.6
1,548,276	+		CA265_RS06300	0.33	-0.7
1,548,293	-		CA265_RS06300	0.34	+0.3
1,548,293	-		CA265_RS06300	0.34	-0.0
1,548,432	-		CA265_RS06300	0.47	-0.2
1,548,460	+		CA265_RS06300	0.49	+0.2
1,548,475	+		CA265_RS06300	0.51	+0.6
1,548,476	-		CA265_RS06300	0.51	+0.9
1,548,481	+		CA265_RS06300	0.51	+1.9
1,548,487	+		CA265_RS06300	0.52	-0.8
1,548,497	+		CA265_RS06300	0.53	-0.4