Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS20870

Experiment: reconstituted MRS with Amylopectin from maize 10 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	reconstituted MRS with Amylopectin from maize 10 mg/ml
1,105,716	-		BBR_RS14845	0.45	+0.9
1,105,765	+		BBR_RS14845	0.53	-1.3
1,105,817	-		BBR_RS14845	0.61	-0.4
1,105,832	-		BBR_RS14845	0.64	-1.1
1,105,914	-		BBR_RS14845	0.77	-1.7
1,105,918	+		BBR_RS14845	0.78	-1.5
1,105,952	+		BBR_RS14845	0.84	-0.9
1,106,043	+				+0.7
1,106,046	-				-1.3
1,106,090	-				+0.7
1,106,152	-				-1.8
1,106,177	-				+1.1
1,106,189	+				+0.3
1,106,189	+				-0.5
1,106,194	+				+0.6
1,106,202	-				-0.5
1,106,204	+				-0.5
1,106,243	+		BBR_RS14850	0.14	+0.6
1,106,391	-		BBR_RS14850	0.55	+0.6
1,106,489	-		BBR_RS14850	0.82	+0.1
1,106,529	-				+0.3
1,106,537	-				+1.1
1,106,569	-				+2.1
1,106,685	-				+0.1
1,106,726	+		BBR_RS20870	0.22	-2.8
1,106,801	+		BBR_RS20870	0.64	-1.5
1,106,885	+				-0.4
1,106,888	-				-0.1
1,106,933	+				+0.3
1,106,933	+				-0.3
1,106,946	-				-2.4
1,106,968	-				+0.0
1,106,988	+				+1.7
1,107,000	+				+0.7
1,107,010	+				+0.6
1,107,050	-				-1.2
1,107,050	-				+0.2
1,107,079	+				+0.2
1,107,118	-				+0.2
1,107,244	-		BBR_RS14860	0.17	-1.4
1,107,253	-		BBR_RS14860	0.17	+0.9
1,107,267	+		BBR_RS14860	0.18	+1.0
1,107,270	-		BBR_RS14860	0.19	-0.4
1,107,291	-		BBR_RS14860	0.20	+1.2
1,107,296	+		BBR_RS14860	0.21	-0.1
1,107,296	+		BBR_RS14860	0.21	+0.1
1,107,296	+		BBR_RS14860	0.21	-0.4
1,107,355	-		BBR_RS14860	0.25	-2.2
1,107,377	-		BBR_RS14860	0.26	-0.3
1,107,388	-		BBR_RS14860	0.27	-0.7
1,107,406	-		BBR_RS14860	0.29	+0.4
1,107,451	-		BBR_RS14860	0.32	-0.1
1,107,531	-		BBR_RS14860	0.38	+0.7
1,107,559	-		BBR_RS14860	0.40	-0.2
1,107,564	-		BBR_RS14860	0.40	+0.4
1,107,576	+		BBR_RS14860	0.41	+0.3
1,107,675	+		BBR_RS14860	0.48	-0.6
1,107,779	-		BBR_RS14860	0.56	-0.1
1,107,791	+		BBR_RS14860	0.57	+0.7
1,107,791	+		BBR_RS14860	0.57	+0.0
1,107,803	+		BBR_RS14860	0.58	+1.0
1,107,803	+		BBR_RS14860	0.58	+0.2
1,107,811	-		BBR_RS14860	0.58	-0.8