Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS14810

Experiment: reconstituted MRS with Amylopectin from maize 10 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	reconstituted MRS with Amylopectin from maize 10 mg/ml
1,096,067	+				-0.5
1,096,077	+				-0.6
1,096,085	-				+0.1
1,096,247	-		BBR_RS14805	0.24	-2.1
1,096,269	+		BBR_RS14805	0.26	+0.2
1,096,329	-		BBR_RS14805	0.32	+1.4
1,096,396	+		BBR_RS14805	0.39	+0.4
1,096,428	+		BBR_RS14805	0.42	+0.2
1,096,441	+		BBR_RS14805	0.43	+0.7
1,096,451	+		BBR_RS14805	0.45	-1.3
1,096,539	-		BBR_RS14805	0.54	+0.1
1,096,557	+		BBR_RS14805	0.55	+1.3
1,096,597	+		BBR_RS14805	0.59	-0.1
1,096,624	-		BBR_RS14805	0.62	-2.1
1,096,631	+		BBR_RS14805	0.63	-0.2
1,096,707	+		BBR_RS14805	0.71	-0.8
1,096,729	+		BBR_RS14805	0.73	-0.6
1,096,742	+		BBR_RS14805	0.74	+1.0
1,096,802	-		BBR_RS14805	0.81	-0.1
1,096,802	-		BBR_RS14805	0.81	-0.4
1,097,056	+				-2.2
1,097,056	+				-0.0
1,097,063	-				+1.4
1,097,064	-				-0.9
1,097,128	-				-1.0
1,097,128	-				+0.4
1,097,128	-				-0.1
1,097,128	-				-1.0
1,097,139	+				-0.4
1,097,145	+				-0.3
1,097,154	-				-1.3
1,097,155	-				-1.0
1,097,157	+				-2.2
1,097,159	-				-1.8
1,097,188	-		BBR_RS14810	0.12	-0.4
1,097,269	-		BBR_RS14810	0.19	-1.0
1,097,271	-		BBR_RS14810	0.19	-0.8
1,097,271	-		BBR_RS14810	0.19	-1.0
1,097,279	-		BBR_RS14810	0.20	-1.3
1,097,286	-		BBR_RS14810	0.20	-1.6
1,097,287	+		BBR_RS14810	0.20	-2.0
1,097,326	+		BBR_RS14810	0.24	-2.1
1,097,326	+		BBR_RS14810	0.24	-0.8
1,097,350	-		BBR_RS14810	0.26	+0.2
1,097,411	+		BBR_RS14810	0.31	+0.1
1,097,419	-		BBR_RS14810	0.31	-2.9
1,097,428	-		BBR_RS14810	0.32	-1.4
1,097,430	-		BBR_RS14810	0.32	-2.5
1,097,446	-		BBR_RS14810	0.34	-1.0
1,097,446	-		BBR_RS14810	0.34	-1.0
1,097,470	-		BBR_RS14810	0.36	-1.1
1,097,496	-		BBR_RS14810	0.38	-1.9
1,097,503	+		BBR_RS14810	0.38	-1.7
1,097,522	+		BBR_RS14810	0.40	-2.0
1,097,537	+		BBR_RS14810	0.41	-0.5
1,097,542	+		BBR_RS14810	0.42	+0.8
1,097,550	-		BBR_RS14810	0.42	+0.1
1,097,555	-		BBR_RS14810	0.43	-1.6
1,097,555	-		BBR_RS14810	0.43	-1.6
1,097,568	+		BBR_RS14810	0.44	-0.3
1,097,633	+		BBR_RS14810	0.49	-0.9
1,097,651	-		BBR_RS14810	0.51	-2.4
1,097,664	-		BBR_RS14810	0.52	-1.3
1,097,702	+		BBR_RS14810	0.55	-2.2
1,097,702	+		BBR_RS14810	0.55	+0.3
1,097,702	+		BBR_RS14810	0.55	-0.8
1,097,710	-		BBR_RS14810	0.56	-2.5
1,097,710	-		BBR_RS14810	0.56	-1.2
1,097,710	-		BBR_RS14810	0.56	-2.2
1,097,710	-		BBR_RS14810	0.56	-1.4
1,097,710	-		BBR_RS14810	0.56	-2.5
1,097,710	-		BBR_RS14810	0.56	-0.9
1,097,712	-		BBR_RS14810	0.56	-2.1
1,097,851	-		BBR_RS14810	0.68	-0.6
1,097,901	-		BBR_RS14810	0.72	-0.8
1,097,935	+		BBR_RS14810	0.75	-2.5
1,097,992	-		BBR_RS14810	0.80	-0.2
1,098,064	-		BBR_RS14810	0.86	-1.0
1,098,102	-		BBR_RS14810	0.89	-2.1
1,098,107	+		BBR_RS14810	0.89	-0.9
1,098,131	+				-1.9
1,098,139	-				-2.1
1,098,245	-				-0.3
1,098,281	-				-0.8
1,098,294	-				+0.9
1,098,294	-				+0.9
1,098,528	+				-0.1
1,098,619	+				+0.2
1,098,633	-				-0.5
1,098,646	+		BBR_RS14815	0.11	+0.0
1,098,730	+		BBR_RS14815	0.21	-0.8
1,098,738	-		BBR_RS14815	0.22	+1.1
1,098,744	+		BBR_RS14815	0.23	-1.0
1,098,748	-		BBR_RS14815	0.24	+0.5
1,098,857	+		BBR_RS14815	0.37	-0.7
1,098,885	+		BBR_RS14815	0.40	+0.0
1,098,885	+		BBR_RS14815	0.40	+0.3
1,098,895	-		BBR_RS14815	0.41	-0.6
1,098,918	-		BBR_RS14815	0.44	-1.0
1,098,969	-		BBR_RS14815	0.50	+0.4
1,099,019	+		BBR_RS14815	0.56	-0.5
1,099,029	-		BBR_RS14815	0.57	+0.1
1,099,037	-		BBR_RS14815	0.58	-0.2
1,099,039	-		BBR_RS14815	0.58	+0.3
1,099,107	-		BBR_RS14815	0.66	-0.5
1,099,139	-		BBR_RS14815	0.70	+1.0
1,099,190	+		BBR_RS14815	0.76	+0.5
1,099,214	+		BBR_RS14815	0.79	+0.3
1,099,214	+		BBR_RS14815	0.79	+0.2
1,099,222	-		BBR_RS14815	0.80	+0.1
1,099,222	-		BBR_RS14815	0.80	+0.2
1,099,231	-		BBR_RS14815	0.81	-0.2