Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4483

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4481 and Ac3H11_4482 overlap by 4 nucleotidesAc3H11_4482 and Ac3H11_4483 are separated by 183 nucleotidesAc3H11_4483 and Ac3H11_4484 are separated by 145 nucleotides Ac3H11_4481 - hypothetical protein, at 67,519 to 68,205 _4481 Ac3H11_4482 - Adenine-specific DNA methyltransferase, at 68,202 to 68,855 _4482 Ac3H11_4483 - Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD, at 69,039 to 70,553 _4483 Ac3H11_4484 - Glycine cleavage system transcriptional activator GcvA, at 70,699 to 71,604 _4484 Position (kb) 69 70 71Strain fitness (log2 ratio) -2 -1 0 1at 68.058 kb on + strand, within Ac3H11_4481at 68.059 kb on - strand, within Ac3H11_4481at 68.102 kb on + strand, within Ac3H11_4481at 68.102 kb on + strand, within Ac3H11_4481at 68.102 kb on + strand, within Ac3H11_4481at 68.102 kb on + strand, within Ac3H11_4481at 68.102 kb on + strand, within Ac3H11_4481at 68.103 kb on - strand, within Ac3H11_4481at 68.103 kb on - strand, within Ac3H11_4481at 68.103 kb on - strand, within Ac3H11_4481at 68.166 kb on + strandat 68.166 kb on + strandat 68.167 kb on - strandat 68.167 kb on - strandat 68.167 kb on - strandat 68.167 kb on - strandat 68.167 kb on - strandat 68.203 kb on + strandat 68.215 kb on - strandat 68.215 kb on - strandat 68.215 kb on - strandat 68.898 kb on - strandat 68.898 kb on - strandat 68.898 kb on - strandat 68.898 kb on - strandat 68.898 kb on - strandat 68.922 kb on - strandat 68.922 kb on - strandat 68.936 kb on - strandat 68.936 kb on - strandat 68.936 kb on - strandat 68.936 kb on - strandat 68.936 kb on - strandat 68.962 kb on + strandat 68.962 kb on + strandat 68.962 kb on + strandat 68.962 kb on + strandat 68.963 kb on - strandat 68.963 kb on - strandat 68.963 kb on - strandat 68.963 kb on - strandat 69.098 kb on - strandat 69.402 kb on + strand, within Ac3H11_4483at 69.402 kb on + strand, within Ac3H11_4483at 69.402 kb on + strand, within Ac3H11_4483at 69.402 kb on + strand, within Ac3H11_4483at 69.402 kb on + strand, within Ac3H11_4483at 69.402 kb on + strand, within Ac3H11_4483at 69.402 kb on + strand, within Ac3H11_4483at 69.402 kb on + strand, within Ac3H11_4483at 69.403 kb on - strand, within Ac3H11_4483at 69.409 kb on + strand, within Ac3H11_4483at 69.409 kb on + strand, within Ac3H11_4483at 69.410 kb on - strand, within Ac3H11_4483at 69.410 kb on - strand, within Ac3H11_4483at 69.410 kb on - strand, within Ac3H11_4483at 69.487 kb on + strand, within Ac3H11_4483at 69.487 kb on + strand, within Ac3H11_4483at 69.487 kb on + strand, within Ac3H11_4483at 69.487 kb on + strand, within Ac3H11_4483at 69.487 kb on + strand, within Ac3H11_4483at 69.487 kb on + strand, within Ac3H11_4483at 69.487 kb on + strand, within Ac3H11_4483at 69.487 kb on + strand, within Ac3H11_4483at 69.487 kb on + strand, within Ac3H11_4483at 69.487 kb on + strand, within Ac3H11_4483at 69.488 kb on - strand, within Ac3H11_4483at 69.488 kb on - strand, within Ac3H11_4483at 69.488 kb on - strand, within Ac3H11_4483at 69.488 kb on - strand, within Ac3H11_4483at 69.488 kb on - strand, within Ac3H11_4483at 69.488 kb on - strand, within Ac3H11_4483at 69.488 kb on - strand, within Ac3H11_4483at 69.683 kb on + strand, within Ac3H11_4483at 69.683 kb on + strand, within Ac3H11_4483at 69.684 kb on - strand, within Ac3H11_4483at 69.684 kb on - strand, within Ac3H11_4483at 69.691 kb on + strand, within Ac3H11_4483at 69.691 kb on + strand, within Ac3H11_4483at 69.692 kb on - strand, within Ac3H11_4483at 69.692 kb on - strand, within Ac3H11_4483at 69.692 kb on - strand, within Ac3H11_4483at 69.692 kb on - strand, within Ac3H11_4483at 69.928 kb on + strand, within Ac3H11_4483at 70.025 kb on - strand, within Ac3H11_4483at 70.108 kb on + strand, within Ac3H11_4483at 70.108 kb on + strand, within Ac3H11_4483at 70.108 kb on + strand, within Ac3H11_4483at 70.108 kb on + strand, within Ac3H11_4483at 70.108 kb on + strand, within Ac3H11_4483at 70.108 kb on + strand, within Ac3H11_4483at 70.109 kb on - strand, within Ac3H11_4483at 70.109 kb on - strand, within Ac3H11_4483at 70.109 kb on - strand, within Ac3H11_4483at 70.109 kb on - strand, within Ac3H11_4483at 70.109 kb on - strand, within Ac3H11_4483at 70.109 kb on - strand, within Ac3H11_4483at 70.109 kb on - strand, within Ac3H11_4483at 70.109 kb on - strand, within Ac3H11_4483at 70.109 kb on - strand, within Ac3H11_4483at 70.109 kb on - strand, within Ac3H11_4483at 70.109 kb on - strand, within Ac3H11_4483at 70.109 kb on - strand, within Ac3H11_4483at 70.111 kb on + strand, within Ac3H11_4483at 70.111 kb on + strand, within Ac3H11_4483at 70.112 kb on - strand, within Ac3H11_4483at 70.112 kb on - strand, within Ac3H11_4483at 70.112 kb on - strand, within Ac3H11_4483at 70.112 kb on - strand, within Ac3H11_4483at 70.112 kb on - strand, within Ac3H11_4483at 70.345 kb on + strand, within Ac3H11_4483at 70.345 kb on + strand, within Ac3H11_4483at 70.345 kb on + strand, within Ac3H11_4483at 70.345 kb on + strand, within Ac3H11_4483at 70.345 kb on + strand, within Ac3H11_4483at 70.345 kb on + strand, within Ac3H11_4483at 70.345 kb on + strand, within Ac3H11_4483at 70.345 kb on + strand, within Ac3H11_4483at 70.345 kb on + strand, within Ac3H11_4483at 70.346 kb on - strand, within Ac3H11_4483at 70.346 kb on - strand, within Ac3H11_4483at 70.346 kb on - strand, within Ac3H11_4483at 70.409 kb on - strandat 70.409 kb on - strandat 70.556 kb on + strandat 70.778 kb on + strandat 70.778 kb on + strandat 70.778 kb on + strandat 70.778 kb on + strandat 70.778 kb on + strandat 70.779 kb on - strandat 70.779 kb on - strandat 70.779 kb on - strandat 70.779 kb on - strandat 70.779 kb on - strandat 70.779 kb on - strandat 70.779 kb on - strandat 70.779 kb on - strandat 71.086 kb on + strand, within Ac3H11_4484at 71.086 kb on + strand, within Ac3H11_4484at 71.086 kb on + strand, within Ac3H11_4484at 71.086 kb on + strand, within Ac3H11_4484at 71.087 kb on - strand, within Ac3H11_4484at 71.087 kb on - strand, within Ac3H11_4484at 71.087 kb on - strand, within Ac3H11_4484at 71.087 kb on - strand, within Ac3H11_4484at 71.087 kb on - strand, within Ac3H11_4484at 71.123 kb on + strand, within Ac3H11_4484at 71.123 kb on + strand, within Ac3H11_4484at 71.124 kb on - strand, within Ac3H11_4484at 71.124 kb on - strand, within Ac3H11_4484at 71.170 kb on + strand, within Ac3H11_4484at 71.170 kb on + strand, within Ac3H11_4484at 71.170 kb on + strand, within Ac3H11_4484at 71.170 kb on + strand, within Ac3H11_4484at 71.170 kb on + strand, within Ac3H11_4484at 71.171 kb on - strand, within Ac3H11_4484at 71.171 kb on - strand, within Ac3H11_4484at 71.171 kb on - strand, within Ac3H11_4484at 71.369 kb on + strand, within Ac3H11_4484at 71.419 kb on + strand, within Ac3H11_4484at 71.419 kb on + strand, within Ac3H11_4484at 71.419 kb on + strand, within Ac3H11_4484at 71.419 kb on + strand, within Ac3H11_4484at 71.419 kb on + strand, within Ac3H11_4484at 71.419 kb on + strand, within Ac3H11_4484at 71.419 kb on + strand, within Ac3H11_4484at 71.420 kb on - strand, within Ac3H11_4484at 71.420 kb on - strand, within Ac3H11_4484

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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68,058 + Ac3H11_4481 0.78 -0.1
68,059 - Ac3H11_4481 0.79 +0.9
68,102 + Ac3H11_4481 0.85 -0.1
68,102 + Ac3H11_4481 0.85 +0.2
68,102 + Ac3H11_4481 0.85 -0.2
68,102 + Ac3H11_4481 0.85 -0.8
68,102 + Ac3H11_4481 0.85 +0.1
68,103 - Ac3H11_4481 0.85 -1.2
68,103 - Ac3H11_4481 0.85 -1.4
68,103 - Ac3H11_4481 0.85 -0.0
68,166 + -0.7
68,166 + -0.1
68,167 - +0.7
68,167 - -0.1
68,167 - +0.5
68,167 - -0.5
68,167 - +0.0
68,203 + +0.3
68,215 - +0.4
68,215 - -0.1
68,215 - -0.1
68,898 - -0.4
68,898 - +0.1
68,898 - -0.3
68,898 - +0.2
68,898 - +0.3
68,922 - +0.3
68,922 - +0.5
68,936 - -0.2
68,936 - +0.4
68,936 - +0.1
68,936 - +0.8
68,936 - +0.1
68,962 + +0.3
68,962 + +0.4
68,962 + +0.6
68,962 + -0.2
68,963 - -0.1
68,963 - +1.3
68,963 - -0.6
68,963 - +0.2
69,098 - +1.5
69,402 + Ac3H11_4483 0.24 -0.6
69,402 + Ac3H11_4483 0.24 -0.4
69,402 + Ac3H11_4483 0.24 +0.2
69,402 + Ac3H11_4483 0.24 -0.9
69,402 + Ac3H11_4483 0.24 -1.1
69,402 + Ac3H11_4483 0.24 -1.3
69,402 + Ac3H11_4483 0.24 -0.2
69,402 + Ac3H11_4483 0.24 -0.7
69,403 - Ac3H11_4483 0.24 -1.0
69,409 + Ac3H11_4483 0.24 -0.7
69,409 + Ac3H11_4483 0.24 -1.0
69,410 - Ac3H11_4483 0.24 -0.1
69,410 - Ac3H11_4483 0.24 +1.0
69,410 - Ac3H11_4483 0.24 -0.2
69,487 + Ac3H11_4483 0.30 -0.3
69,487 + Ac3H11_4483 0.30 -1.3
69,487 + Ac3H11_4483 0.30 -1.3
69,487 + Ac3H11_4483 0.30 -0.7
69,487 + Ac3H11_4483 0.30 -0.1
69,487 + Ac3H11_4483 0.30 -1.6
69,487 + Ac3H11_4483 0.30 -0.8
69,487 + Ac3H11_4483 0.30 +0.4
69,487 + Ac3H11_4483 0.30 -0.6
69,487 + Ac3H11_4483 0.30 -1.1
69,488 - Ac3H11_4483 0.30 -1.1
69,488 - Ac3H11_4483 0.30 -0.0
69,488 - Ac3H11_4483 0.30 -1.6
69,488 - Ac3H11_4483 0.30 -0.1
69,488 - Ac3H11_4483 0.30 -1.7
69,488 - Ac3H11_4483 0.30 -1.1
69,488 - Ac3H11_4483 0.30 -1.6
69,683 + Ac3H11_4483 0.43 -0.7
69,683 + Ac3H11_4483 0.43 -0.8
69,684 - Ac3H11_4483 0.43 -1.0
69,684 - Ac3H11_4483 0.43 -0.6
69,691 + Ac3H11_4483 0.43 -0.4
69,691 + Ac3H11_4483 0.43 -1.6
69,692 - Ac3H11_4483 0.43 -0.7
69,692 - Ac3H11_4483 0.43 +0.5
69,692 - Ac3H11_4483 0.43 -1.5
69,692 - Ac3H11_4483 0.43 +0.1
69,928 + Ac3H11_4483 0.59 -1.0
70,025 - Ac3H11_4483 0.65 -2.2
70,108 + Ac3H11_4483 0.71 +0.0
70,108 + Ac3H11_4483 0.71 -0.9
70,108 + Ac3H11_4483 0.71 -0.5
70,108 + Ac3H11_4483 0.71 -0.1
70,108 + Ac3H11_4483 0.71 +0.6
70,108 + Ac3H11_4483 0.71 -0.5
70,109 - Ac3H11_4483 0.71 -0.5
70,109 - Ac3H11_4483 0.71 -0.4
70,109 - Ac3H11_4483 0.71 -2.0
70,109 - Ac3H11_4483 0.71 -1.2
70,109 - Ac3H11_4483 0.71 -1.1
70,109 - Ac3H11_4483 0.71 -0.4
70,109 - Ac3H11_4483 0.71 -1.8
70,109 - Ac3H11_4483 0.71 -0.4
70,109 - Ac3H11_4483 0.71 -0.8
70,109 - Ac3H11_4483 0.71 -0.9
70,109 - Ac3H11_4483 0.71 +0.7
70,109 - Ac3H11_4483 0.71 -1.0
70,111 + Ac3H11_4483 0.71 +0.1
70,111 + Ac3H11_4483 0.71 +0.1
70,112 - Ac3H11_4483 0.71 -2.1
70,112 - Ac3H11_4483 0.71 -1.2
70,112 - Ac3H11_4483 0.71 -1.2
70,112 - Ac3H11_4483 0.71 -0.6
70,112 - Ac3H11_4483 0.71 -0.1
70,345 + Ac3H11_4483 0.86 +0.1
70,345 + Ac3H11_4483 0.86 -1.2
70,345 + Ac3H11_4483 0.86 -1.5
70,345 + Ac3H11_4483 0.86 +0.7
70,345 + Ac3H11_4483 0.86 -1.1
70,345 + Ac3H11_4483 0.86 -0.5
70,345 + Ac3H11_4483 0.86 +0.1
70,345 + Ac3H11_4483 0.86 -1.8
70,345 + Ac3H11_4483 0.86 -0.2
70,346 - Ac3H11_4483 0.86 -2.6
70,346 - Ac3H11_4483 0.86 -0.3
70,346 - Ac3H11_4483 0.86 -1.1
70,409 - -0.8
70,409 - -0.6
70,556 + +0.2
70,778 + +0.7
70,778 + -0.4
70,778 + -1.3
70,778 + -0.0
70,778 + -0.7
70,779 - -0.8
70,779 - +0.2
70,779 - -1.1
70,779 - -0.7
70,779 - -0.1
70,779 - +0.1
70,779 - +0.1
70,779 - -0.7
71,086 + Ac3H11_4484 0.43 -0.8
71,086 + Ac3H11_4484 0.43 -0.6
71,086 + Ac3H11_4484 0.43 -0.7
71,086 + Ac3H11_4484 0.43 -1.2
71,087 - Ac3H11_4484 0.43 -1.0
71,087 - Ac3H11_4484 0.43 -1.4
71,087 - Ac3H11_4484 0.43 -1.2
71,087 - Ac3H11_4484 0.43 -0.9
71,087 - Ac3H11_4484 0.43 -0.6
71,123 + Ac3H11_4484 0.47 -1.4
71,123 + Ac3H11_4484 0.47 -0.7
71,124 - Ac3H11_4484 0.47 -0.5
71,124 - Ac3H11_4484 0.47 -0.3
71,170 + Ac3H11_4484 0.52 +0.3
71,170 + Ac3H11_4484 0.52 -0.9
71,170 + Ac3H11_4484 0.52 -0.6
71,170 + Ac3H11_4484 0.52 -0.9
71,170 + Ac3H11_4484 0.52 -0.8
71,171 - Ac3H11_4484 0.52 -1.3
71,171 - Ac3H11_4484 0.52 -1.9
71,171 - Ac3H11_4484 0.52 -1.0
71,369 + Ac3H11_4484 0.74 -1.1
71,419 + Ac3H11_4484 0.79 -0.6
71,419 + Ac3H11_4484 0.79 -0.9
71,419 + Ac3H11_4484 0.79 -0.7
71,419 + Ac3H11_4484 0.79 +0.1
71,419 + Ac3H11_4484 0.79 -0.5
71,419 + Ac3H11_4484 0.79 -1.4
71,419 + Ac3H11_4484 0.79 -0.9
71,420 - Ac3H11_4484 0.80 -1.6
71,420 - Ac3H11_4484 0.80 +0.1

Or see this region's nucleotide sequence