Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4429

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4427 and Ac3H11_4428 overlap by 4 nucleotidesAc3H11_4428 and Ac3H11_4429 are separated by 94 nucleotidesAc3H11_4429 and Ac3H11_4430 are separated by 213 nucleotidesAc3H11_4430 and Ac3H11_4431 are separated by 19 nucleotides Ac3H11_4427 - Probable transmembrane protein, at 4,120 to 5,073 _4427 Ac3H11_4428 - Molybdopterin-binding protein, at 5,070 to 5,891 _4428 Ac3H11_4429 - Glutamine synthetase type I (EC 6.3.1.2), at 5,986 to 7,479 _4429 Ac3H11_4430 - FIG01198927: hypothetical protein, at 7,693 to 8,205 _4430 Ac3H11_4431 - Nitrogen regulation protein NtrB (EC 2.7.13.3), at 8,225 to 9,313 _4431 Position (kb) 5 6 7 8Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5.034 kb on + strandat 5.034 kb on + strandat 5.035 kb on - strandat 5.187 kb on + strand, within Ac3H11_4428at 5.187 kb on + strand, within Ac3H11_4428at 5.187 kb on + strand, within Ac3H11_4428at 5.196 kb on + strand, within Ac3H11_4428at 5.196 kb on + strand, within Ac3H11_4428at 5.196 kb on + strand, within Ac3H11_4428at 5.196 kb on + strand, within Ac3H11_4428at 5.197 kb on - strand, within Ac3H11_4428at 5.197 kb on - strand, within Ac3H11_4428at 5.197 kb on - strand, within Ac3H11_4428at 5.392 kb on + strand, within Ac3H11_4428at 5.392 kb on + strand, within Ac3H11_4428at 5.392 kb on + strand, within Ac3H11_4428at 5.392 kb on + strand, within Ac3H11_4428at 5.393 kb on - strand, within Ac3H11_4428at 5.415 kb on + strand, within Ac3H11_4428at 5.415 kb on + strand, within Ac3H11_4428at 5.416 kb on - strand, within Ac3H11_4428at 5.496 kb on + strand, within Ac3H11_4428at 5.496 kb on + strand, within Ac3H11_4428at 5.496 kb on + strand, within Ac3H11_4428at 5.496 kb on + strand, within Ac3H11_4428at 5.496 kb on + strand, within Ac3H11_4428at 5.496 kb on + strand, within Ac3H11_4428at 5.496 kb on + strand, within Ac3H11_4428at 5.496 kb on + strand, within Ac3H11_4428at 5.496 kb on + strand, within Ac3H11_4428at 5.497 kb on - strand, within Ac3H11_4428at 5.497 kb on - strand, within Ac3H11_4428at 5.497 kb on - strand, within Ac3H11_4428at 5.497 kb on - strand, within Ac3H11_4428at 5.497 kb on - strand, within Ac3H11_4428at 5.497 kb on - strand, within Ac3H11_4428at 5.610 kb on + strand, within Ac3H11_4428at 5.611 kb on - strand, within Ac3H11_4428at 5.624 kb on + strand, within Ac3H11_4428at 5.661 kb on + strand, within Ac3H11_4428at 5.662 kb on - strand, within Ac3H11_4428at 5.662 kb on - strand, within Ac3H11_4428at 5.763 kb on + strand, within Ac3H11_4428at 5.763 kb on + strand, within Ac3H11_4428at 5.763 kb on + strand, within Ac3H11_4428at 5.763 kb on + strand, within Ac3H11_4428at 5.764 kb on - strand, within Ac3H11_4428at 5.764 kb on - strand, within Ac3H11_4428at 5.774 kb on + strand, within Ac3H11_4428at 5.775 kb on - strand, within Ac3H11_4428at 5.775 kb on - strand, within Ac3H11_4428at 5.775 kb on - strand, within Ac3H11_4428at 5.775 kb on - strand, within Ac3H11_4428at 5.775 kb on - strand, within Ac3H11_4428at 5.775 kb on - strand, within Ac3H11_4428at 5.775 kb on - strand, within Ac3H11_4428at 5.956 kb on + strandat 5.956 kb on + strandat 5.957 kb on - strandat 5.976 kb on + strandat 5.976 kb on + strandat 5.976 kb on + strandat 5.976 kb on + strandat 5.977 kb on - strandat 5.977 kb on - strandat 5.977 kb on - strandat 5.984 kb on + strandat 6.015 kb on + strandat 6.015 kb on + strandat 7.477 kb on + strandat 7.477 kb on + strandat 7.478 kb on - strandat 7.478 kb on - strandat 7.478 kb on - strandat 7.478 kb on - strandat 7.478 kb on - strandat 7.598 kb on + strandat 7.599 kb on - strandat 7.654 kb on + strandat 7.654 kb on + strandat 7.655 kb on - strandat 7.765 kb on + strand, within Ac3H11_4430at 7.766 kb on - strand, within Ac3H11_4430at 7.783 kb on + strand, within Ac3H11_4430at 7.783 kb on + strand, within Ac3H11_4430at 7.783 kb on + strand, within Ac3H11_4430at 7.783 kb on + strand, within Ac3H11_4430at 7.784 kb on - strand, within Ac3H11_4430at 7.784 kb on - strand, within Ac3H11_4430at 7.784 kb on - strand, within Ac3H11_4430at 7.784 kb on - strand, within Ac3H11_4430at 7.784 kb on - strand, within Ac3H11_4430at 7.784 kb on - strand, within Ac3H11_4430at 8.047 kb on + strand, within Ac3H11_4430at 8.047 kb on + strand, within Ac3H11_4430at 8.047 kb on + strand, within Ac3H11_4430at 8.047 kb on + strand, within Ac3H11_4430at 8.048 kb on - strand, within Ac3H11_4430at 8.048 kb on - strand, within Ac3H11_4430at 8.048 kb on - strand, within Ac3H11_4430at 8.048 kb on - strand, within Ac3H11_4430at 8.048 kb on - strand, within Ac3H11_4430at 8.101 kb on + strand, within Ac3H11_4430at 8.101 kb on + strand, within Ac3H11_4430at 8.102 kb on - strand, within Ac3H11_4430at 8.203 kb on + strandat 8.203 kb on + strandat 8.203 kb on + strandat 8.203 kb on + strandat 8.203 kb on + strandat 8.204 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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5,034 + -0.0
5,034 + +0.3
5,035 - +0.5
5,187 + Ac3H11_4428 0.14 +3.3
5,187 + Ac3H11_4428 0.14 +0.8
5,187 + Ac3H11_4428 0.14 -0.5
5,196 + Ac3H11_4428 0.15 +0.9
5,196 + Ac3H11_4428 0.15 +0.2
5,196 + Ac3H11_4428 0.15 -0.1
5,196 + Ac3H11_4428 0.15 -2.4
5,197 - Ac3H11_4428 0.15 -0.2
5,197 - Ac3H11_4428 0.15 -0.3
5,197 - Ac3H11_4428 0.15 -0.1
5,392 + Ac3H11_4428 0.39 +1.5
5,392 + Ac3H11_4428 0.39 +0.8
5,392 + Ac3H11_4428 0.39 +0.8
5,392 + Ac3H11_4428 0.39 +0.1
5,393 - Ac3H11_4428 0.39 +0.1
5,415 + Ac3H11_4428 0.42 +0.4
5,415 + Ac3H11_4428 0.42 -0.0
5,416 - Ac3H11_4428 0.42 -0.7
5,496 + Ac3H11_4428 0.52 +0.6
5,496 + Ac3H11_4428 0.52 -0.9
5,496 + Ac3H11_4428 0.52 +1.4
5,496 + Ac3H11_4428 0.52 -0.8
5,496 + Ac3H11_4428 0.52 -0.9
5,496 + Ac3H11_4428 0.52 -0.2
5,496 + Ac3H11_4428 0.52 +1.0
5,496 + Ac3H11_4428 0.52 +0.1
5,496 + Ac3H11_4428 0.52 +0.8
5,497 - Ac3H11_4428 0.52 +1.0
5,497 - Ac3H11_4428 0.52 +0.1
5,497 - Ac3H11_4428 0.52 +1.2
5,497 - Ac3H11_4428 0.52 +2.9
5,497 - Ac3H11_4428 0.52 +0.3
5,497 - Ac3H11_4428 0.52 -0.3
5,610 + Ac3H11_4428 0.66 +0.2
5,611 - Ac3H11_4428 0.66 +0.2
5,624 + Ac3H11_4428 0.67 -0.2
5,661 + Ac3H11_4428 0.72 -0.7
5,662 - Ac3H11_4428 0.72 +1.2
5,662 - Ac3H11_4428 0.72 -0.7
5,763 + Ac3H11_4428 0.84 +0.8
5,763 + Ac3H11_4428 0.84 -0.1
5,763 + Ac3H11_4428 0.84 +0.4
5,763 + Ac3H11_4428 0.84 +1.0
5,764 - Ac3H11_4428 0.84 -0.9
5,764 - Ac3H11_4428 0.84 -0.3
5,774 + Ac3H11_4428 0.86 +1.2
5,775 - Ac3H11_4428 0.86 -0.6
5,775 - Ac3H11_4428 0.86 +0.5
5,775 - Ac3H11_4428 0.86 -0.6
5,775 - Ac3H11_4428 0.86 +1.4
5,775 - Ac3H11_4428 0.86 +0.3
5,775 - Ac3H11_4428 0.86 -0.2
5,775 - Ac3H11_4428 0.86 +0.1
5,956 + +1.0
5,956 + +0.3
5,957 - -3.0
5,976 + -0.7
5,976 + +0.7
5,976 + +0.9
5,976 + -0.1
5,977 - -3.5
5,977 - -2.7
5,977 - -2.0
5,984 + +0.3
6,015 + -0.7
6,015 + -3.0
7,477 + -2.0
7,477 + -0.4
7,478 - -0.2
7,478 - -0.1
7,478 - -0.5
7,478 - -1.7
7,478 - -2.4
7,598 + +0.6
7,599 - +0.3
7,654 + +0.7
7,654 + +0.3
7,655 - +0.9
7,765 + Ac3H11_4430 0.14 +0.2
7,766 - Ac3H11_4430 0.14 -1.1
7,783 + Ac3H11_4430 0.18 +0.1
7,783 + Ac3H11_4430 0.18 +0.9
7,783 + Ac3H11_4430 0.18 +1.6
7,783 + Ac3H11_4430 0.18 -0.4
7,784 - Ac3H11_4430 0.18 -0.1
7,784 - Ac3H11_4430 0.18 +0.6
7,784 - Ac3H11_4430 0.18 -0.6
7,784 - Ac3H11_4430 0.18 -0.4
7,784 - Ac3H11_4430 0.18 +0.2
7,784 - Ac3H11_4430 0.18 +0.1
8,047 + Ac3H11_4430 0.69 -0.1
8,047 + Ac3H11_4430 0.69 -0.5
8,047 + Ac3H11_4430 0.69 +0.9
8,047 + Ac3H11_4430 0.69 -0.4
8,048 - Ac3H11_4430 0.69 -0.6
8,048 - Ac3H11_4430 0.69 -0.2
8,048 - Ac3H11_4430 0.69 +0.8
8,048 - Ac3H11_4430 0.69 -1.1
8,048 - Ac3H11_4430 0.69 -0.5
8,101 + Ac3H11_4430 0.80 -0.3
8,101 + Ac3H11_4430 0.80 +0.4
8,102 - Ac3H11_4430 0.80 +2.6
8,203 + +1.3
8,203 + +0.0
8,203 + -0.8
8,203 + -0.1
8,203 + -0.0
8,204 - -0.1

Or see this region's nucleotide sequence