Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3834

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3832 and Ac3H11_3833 are separated by 149 nucleotidesAc3H11_3833 and Ac3H11_3834 overlap by 13 nucleotidesAc3H11_3834 and Ac3H11_3835 are separated by 59 nucleotidesAc3H11_3835 and Ac3H11_3836 are separated by 61 nucleotides Ac3H11_3832 - integral membrane sensor hybrid histidine kinase, at 48,038 to 49,825 _3832 Ac3H11_3833 - probable membrane protein YPO2051, at 49,975 to 50,367 _3833 Ac3H11_3834 - hydrolase, alpha/beta fold family, at 50,355 to 51,245 _3834 Ac3H11_3835 - Probable 5-carboxymethyl-2-hydroxymuconate delta isomerase, at 51,305 to 51,664 _3835 Ac3H11_3836 - Para-aminobenzoate synthase, aminase component (EC 2.6.1.85) / Aminodeoxychorismate lyase (EC 4.1.3.38), at 51,726 to 53,558 _3836 Position (kb) 50 51 52Strain fitness (log2 ratio) -1 0 1at 49.909 kb on + strandat 49.909 kb on + strandat 49.909 kb on + strandat 50.251 kb on + strand, within Ac3H11_3833at 50.251 kb on + strand, within Ac3H11_3833at 50.252 kb on - strand, within Ac3H11_3833at 50.482 kb on - strand, within Ac3H11_3834at 50.598 kb on + strand, within Ac3H11_3834at 50.791 kb on - strand, within Ac3H11_3834at 50.935 kb on + strand, within Ac3H11_3834at 50.935 kb on + strand, within Ac3H11_3834at 50.935 kb on + strand, within Ac3H11_3834at 50.935 kb on + strand, within Ac3H11_3834at 50.994 kb on + strand, within Ac3H11_3834at 50.994 kb on + strand, within Ac3H11_3834at 50.995 kb on - strand, within Ac3H11_3834at 50.995 kb on - strand, within Ac3H11_3834at 50.995 kb on - strand, within Ac3H11_3834at 51.115 kb on - strand, within Ac3H11_3834at 51.115 kb on - strand, within Ac3H11_3834at 51.272 kb on + strandat 51.273 kb on - strandat 51.326 kb on + strandat 51.327 kb on - strandat 51.327 kb on - strandat 51.644 kb on + strandat 51.644 kb on + strandat 51.645 kb on - strandat 51.645 kb on - strandat 51.645 kb on - strandat 51.673 kb on + strandat 52.013 kb on - strand, within Ac3H11_3836at 52.037 kb on - strand, within Ac3H11_3836

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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49,909 + +1.0
49,909 + -1.0
49,909 + -1.4
50,251 + Ac3H11_3833 0.70 -1.1
50,251 + Ac3H11_3833 0.70 -0.4
50,252 - Ac3H11_3833 0.70 -0.4
50,482 - Ac3H11_3834 0.14 -0.8
50,598 + Ac3H11_3834 0.27 -0.6
50,791 - Ac3H11_3834 0.49 -0.4
50,935 + Ac3H11_3834 0.65 +0.5
50,935 + Ac3H11_3834 0.65 -0.4
50,935 + Ac3H11_3834 0.65 +0.3
50,935 + Ac3H11_3834 0.65 +0.8
50,994 + Ac3H11_3834 0.72 +0.7
50,994 + Ac3H11_3834 0.72 +0.7
50,995 - Ac3H11_3834 0.72 +0.1
50,995 - Ac3H11_3834 0.72 +0.6
50,995 - Ac3H11_3834 0.72 +0.7
51,115 - Ac3H11_3834 0.85 +0.6
51,115 - Ac3H11_3834 0.85 -0.4
51,272 + -1.5
51,273 - -0.4
51,326 + +0.1
51,327 - -0.4
51,327 - -0.4
51,644 + +0.5
51,644 + +0.0
51,645 - +0.0
51,645 - +0.2
51,645 - -0.2
51,673 + +0.2
52,013 - Ac3H11_3836 0.16 -1.6
52,037 - Ac3H11_3836 0.17 -0.3

Or see this region's nucleotide sequence