Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3610

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3608 and Ac3H11_3609 are separated by 30 nucleotidesAc3H11_3609 and Ac3H11_3610 are separated by 90 nucleotidesAc3H11_3610 and Ac3H11_3611 overlap by 4 nucleotides Ac3H11_3608 - hypothetical protein, at 161,378 to 161,746 _3608 Ac3H11_3609 - Transcriptional regulator, IclR family, at 161,777 to 162,529 _3609 Ac3H11_3610 - Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-), at 162,620 to 163,465 _3610 Ac3H11_3611 - Monooxygenase, flavin-binding family, at 163,462 to 164,796 _3611 Position (kb) 162 163 164Strain fitness (log2 ratio) -2 -1 0 1 2 3at 161.669 kb on + strand, within Ac3H11_3608at 161.669 kb on + strand, within Ac3H11_3608at 161.669 kb on + strand, within Ac3H11_3608at 161.669 kb on + strand, within Ac3H11_3608at 161.669 kb on + strand, within Ac3H11_3608at 161.670 kb on - strand, within Ac3H11_3608at 161.670 kb on - strand, within Ac3H11_3608at 161.670 kb on - strand, within Ac3H11_3608at 161.670 kb on - strand, within Ac3H11_3608at 161.670 kb on - strand, within Ac3H11_3608at 161.670 kb on - strand, within Ac3H11_3608at 161.693 kb on - strand, within Ac3H11_3608at 161.718 kb on + strandat 161.734 kb on - strandat 161.746 kb on + strandat 161.746 kb on + strandat 161.746 kb on + strandat 161.746 kb on + strandat 161.746 kb on + strandat 161.746 kb on + strandat 161.746 kb on + strandat 161.746 kb on + strandat 161.746 kb on + strandat 161.747 kb on - strandat 161.747 kb on - strandat 161.747 kb on - strandat 161.747 kb on - strandat 161.747 kb on - strandat 161.747 kb on - strandat 161.747 kb on - strandat 161.747 kb on - strandat 161.747 kb on - strandat 161.747 kb on - strandat 161.747 kb on - strandat 161.747 kb on - strandat 161.747 kb on - strandat 161.763 kb on + strandat 161.778 kb on + strandat 161.779 kb on - strandat 161.779 kb on - strandat 161.835 kb on - strandat 161.835 kb on - strandat 161.835 kb on - strandat 161.945 kb on + strand, within Ac3H11_3609at 161.945 kb on + strand, within Ac3H11_3609at 161.945 kb on + strand, within Ac3H11_3609at 161.945 kb on + strand, within Ac3H11_3609at 161.946 kb on - strand, within Ac3H11_3609at 161.946 kb on - strand, within Ac3H11_3609at 161.946 kb on - strand, within Ac3H11_3609at 161.946 kb on - strand, within Ac3H11_3609at 161.970 kb on + strand, within Ac3H11_3609at 161.970 kb on + strand, within Ac3H11_3609at 162.195 kb on + strand, within Ac3H11_3609at 162.195 kb on + strand, within Ac3H11_3609at 162.195 kb on + strand, within Ac3H11_3609at 162.195 kb on + strand, within Ac3H11_3609at 162.195 kb on + strand, within Ac3H11_3609at 162.345 kb on + strand, within Ac3H11_3609at 162.346 kb on - strand, within Ac3H11_3609at 162.785 kb on + strand, within Ac3H11_3610at 162.785 kb on + strand, within Ac3H11_3610at 162.785 kb on + strand, within Ac3H11_3610at 162.785 kb on + strand, within Ac3H11_3610at 162.815 kb on - strand, within Ac3H11_3610at 162.815 kb on - strand, within Ac3H11_3610at 162.869 kb on - strand, within Ac3H11_3610at 163.169 kb on + strand, within Ac3H11_3610at 163.169 kb on + strand, within Ac3H11_3610at 163.645 kb on + strand, within Ac3H11_3611at 163.645 kb on + strand, within Ac3H11_3611at 163.645 kb on + strand, within Ac3H11_3611at 163.646 kb on - strand, within Ac3H11_3611at 163.646 kb on - strand, within Ac3H11_3611at 163.750 kb on + strand, within Ac3H11_3611at 163.750 kb on + strand, within Ac3H11_3611at 163.792 kb on + strand, within Ac3H11_3611at 163.997 kb on - strand, within Ac3H11_3611at 164.086 kb on + strand, within Ac3H11_3611at 164.086 kb on + strand, within Ac3H11_3611at 164.087 kb on - strand, within Ac3H11_3611at 164.122 kb on + strand, within Ac3H11_3611at 164.125 kb on + strand, within Ac3H11_3611at 164.125 kb on + strand, within Ac3H11_3611at 164.125 kb on + strand, within Ac3H11_3611at 164.125 kb on + strand, within Ac3H11_3611at 164.125 kb on + strand, within Ac3H11_3611at 164.126 kb on - strand, within Ac3H11_3611at 164.140 kb on + strand, within Ac3H11_3611at 164.140 kb on + strand, within Ac3H11_3611at 164.140 kb on + strand, within Ac3H11_3611at 164.140 kb on + strand, within Ac3H11_3611at 164.140 kb on + strand, within Ac3H11_3611at 164.140 kb on + strand, within Ac3H11_3611at 164.141 kb on - strand, within Ac3H11_3611at 164.141 kb on - strandat 164.141 kb on - strand, within Ac3H11_3611at 164.276 kb on - strand, within Ac3H11_3611at 164.284 kb on + strand, within Ac3H11_3611at 164.285 kb on - strand, within Ac3H11_3611at 164.285 kb on - strand, within Ac3H11_3611at 164.285 kb on - strand, within Ac3H11_3611at 164.285 kb on - strand, within Ac3H11_3611at 164.413 kb on + strand, within Ac3H11_3611at 164.413 kb on + strand, within Ac3H11_3611at 164.414 kb on - strand, within Ac3H11_3611at 164.441 kb on - strand, within Ac3H11_3611at 164.452 kb on + strand, within Ac3H11_3611at 164.452 kb on + strand, within Ac3H11_3611at 164.453 kb on - strand, within Ac3H11_3611

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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161,669 + Ac3H11_3608 0.79 +0.4
161,669 + Ac3H11_3608 0.79 +0.3
161,669 + Ac3H11_3608 0.79 -0.1
161,669 + Ac3H11_3608 0.79 -0.8
161,669 + Ac3H11_3608 0.79 +0.5
161,670 - Ac3H11_3608 0.79 -0.8
161,670 - Ac3H11_3608 0.79 +0.7
161,670 - Ac3H11_3608 0.79 -0.7
161,670 - Ac3H11_3608 0.79 +0.1
161,670 - Ac3H11_3608 0.79 -0.3
161,670 - Ac3H11_3608 0.79 +0.1
161,693 - Ac3H11_3608 0.85 -0.2
161,718 + -0.1
161,734 - +0.2
161,746 + +0.5
161,746 + +0.5
161,746 + -0.4
161,746 + +1.1
161,746 + -0.8
161,746 + -0.4
161,746 + +1.1
161,746 + -2.1
161,746 + -0.6
161,747 - -0.3
161,747 - +0.3
161,747 - -0.0
161,747 - +0.3
161,747 - -0.9
161,747 - +0.3
161,747 - -0.1
161,747 - -0.3
161,747 - +0.1
161,747 - -0.2
161,747 - -1.3
161,747 - +1.5
161,747 - +0.2
161,763 + -0.5
161,778 + -0.9
161,779 - -1.0
161,779 - +0.6
161,835 - +0.9
161,835 - +0.5
161,835 - -0.7
161,945 + Ac3H11_3609 0.22 -0.9
161,945 + Ac3H11_3609 0.22 +0.3
161,945 + Ac3H11_3609 0.22 +1.1
161,945 + Ac3H11_3609 0.22 -0.3
161,946 - Ac3H11_3609 0.22 +0.0
161,946 - Ac3H11_3609 0.22 +1.2
161,946 - Ac3H11_3609 0.22 -2.1
161,946 - Ac3H11_3609 0.22 -0.9
161,970 + Ac3H11_3609 0.26 -1.7
161,970 + Ac3H11_3609 0.26 -0.9
162,195 + Ac3H11_3609 0.56 -0.6
162,195 + Ac3H11_3609 0.56 +0.6
162,195 + Ac3H11_3609 0.56 -0.8
162,195 + Ac3H11_3609 0.56 +1.5
162,195 + Ac3H11_3609 0.56 +0.5
162,345 + Ac3H11_3609 0.75 +1.0
162,346 - Ac3H11_3609 0.76 -0.0
162,785 + Ac3H11_3610 0.20 -1.2
162,785 + Ac3H11_3610 0.20 +0.1
162,785 + Ac3H11_3610 0.20 -0.9
162,785 + Ac3H11_3610 0.20 +1.2
162,815 - Ac3H11_3610 0.23 +0.3
162,815 - Ac3H11_3610 0.23 +1.5
162,869 - Ac3H11_3610 0.29 -0.5
163,169 + Ac3H11_3610 0.65 -0.9
163,169 + Ac3H11_3610 0.65 +0.1
163,645 + Ac3H11_3611 0.14 +0.3
163,645 + Ac3H11_3611 0.14 -0.6
163,645 + Ac3H11_3611 0.14 +0.2
163,646 - Ac3H11_3611 0.14 -0.1
163,646 - Ac3H11_3611 0.14 +0.9
163,750 + Ac3H11_3611 0.22 -0.9
163,750 + Ac3H11_3611 0.22 +0.7
163,792 + Ac3H11_3611 0.25 +0.1
163,997 - Ac3H11_3611 0.40 -1.1
164,086 + Ac3H11_3611 0.47 +0.8
164,086 + Ac3H11_3611 0.47 +1.1
164,087 - Ac3H11_3611 0.47 +0.2
164,122 + Ac3H11_3611 0.49 -0.4
164,125 + Ac3H11_3611 0.50 +0.9
164,125 + Ac3H11_3611 0.50 -0.5
164,125 + Ac3H11_3611 0.50 +1.5
164,125 + Ac3H11_3611 0.50 -0.1
164,125 + Ac3H11_3611 0.50 -1.1
164,126 - Ac3H11_3611 0.50 +2.7
164,140 + Ac3H11_3611 0.51 +1.1
164,140 + Ac3H11_3611 0.51 -0.7
164,140 + Ac3H11_3611 0.51 +1.2
164,140 + Ac3H11_3611 0.51 -0.1
164,140 + Ac3H11_3611 0.51 -0.4
164,140 + Ac3H11_3611 0.51 +0.4
164,141 - Ac3H11_3611 0.51 +0.4
164,141 - +1.1
164,141 - Ac3H11_3611 0.51 +0.4
164,276 - Ac3H11_3611 0.61 +0.8
164,284 + Ac3H11_3611 0.62 +0.8
164,285 - Ac3H11_3611 0.62 -0.4
164,285 - Ac3H11_3611 0.62 +0.1
164,285 - Ac3H11_3611 0.62 -0.4
164,285 - Ac3H11_3611 0.62 +0.2
164,413 + Ac3H11_3611 0.71 +1.1
164,413 + Ac3H11_3611 0.71 +0.7
164,414 - Ac3H11_3611 0.71 +0.9
164,441 - Ac3H11_3611 0.73 -0.6
164,452 + Ac3H11_3611 0.74 +3.1
164,452 + Ac3H11_3611 0.74 -0.2
164,453 - Ac3H11_3611 0.74 +0.6

Or see this region's nucleotide sequence