Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000846 and ABIE53_000847 are separated by 116 nucleotides ABIE53_000847 and ABIE53_000848 are separated by 80 nucleotides ABIE53_000848 and ABIE53_000849 are separated by 3 nucleotides ABIE53_000849 and ABIE53_000850 are separated by 226 nucleotides
ABIE53_000846: ABIE53_000846 - cob(I)alamin adenosyltransferase, at 918,411 to 918,965
_000846
ABIE53_000847: ABIE53_000847 - nitric oxide dioxygenase, at 919,082 to 920,287
_000847
ABIE53_000848: ABIE53_000848 - putative XRE-type DNA-binding protein, at 920,368 to 920,700
_000848
ABIE53_000849: ABIE53_000849 - phage-related protein, at 920,704 to 921,042
_000849
ABIE53_000850: ABIE53_000850 - 3-deoxy-7-phosphoheptulonate synthase, at 921,269 to 922,342
_000850
Position (kb) 919
920
921 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 918.122 kb on - strand at 918.122 kb on - strand at 918.241 kb on + strand at 918.241 kb on + strand at 918.241 kb on + strand at 918.241 kb on + strand at 918.241 kb on + strand at 918.241 kb on + strand at 918.241 kb on + strand at 918.242 kb on - strand at 918.242 kb on - strand at 918.242 kb on - strand at 918.242 kb on - strand at 918.242 kb on - strand at 918.242 kb on - strand at 918.242 kb on - strand at 918.242 kb on - strand at 918.242 kb on - strand at 918.242 kb on - strand at 918.242 kb on - strand at 918.242 kb on - strand at 918.242 kb on - strand at 918.242 kb on - strand at 918.243 kb on + strand at 918.243 kb on + strand at 918.244 kb on - strand at 918.244 kb on - strand at 918.244 kb on - strand at 918.272 kb on + strand at 918.272 kb on + strand at 918.272 kb on + strand at 918.272 kb on + strand at 918.272 kb on + strand at 918.272 kb on + strand at 918.272 kb on + strand at 918.272 kb on + strand at 918.272 kb on + strand at 918.273 kb on - strand at 918.273 kb on - strand at 918.273 kb on - strand at 918.273 kb on - strand at 918.273 kb on - strand at 918.273 kb on - strand at 918.273 kb on - strand at 918.273 kb on - strand at 918.273 kb on - strand at 918.273 kb on - strand at 918.273 kb on - strand at 918.273 kb on - strand at 918.273 kb on - strand at 918.273 kb on - strand at 918.273 kb on - strand at 918.273 kb on - strand at 918.286 kb on + strand at 918.287 kb on - strand at 918.301 kb on + strand at 918.345 kb on - strand at 918.345 kb on - strand at 918.424 kb on + strand at 918.488 kb on - strand, within ABIE53_000846 at 918.705 kb on + strand, within ABIE53_000846 at 918.705 kb on + strand, within ABIE53_000846 at 918.705 kb on + strand, within ABIE53_000846 at 918.706 kb on - strand, within ABIE53_000846 at 918.706 kb on - strand, within ABIE53_000846 at 918.706 kb on - strand, within ABIE53_000846 at 918.861 kb on + strand, within ABIE53_000846 at 918.861 kb on + strand, within ABIE53_000846 at 918.861 kb on + strand, within ABIE53_000846 at 918.861 kb on + strand, within ABIE53_000846 at 918.861 kb on + strand, within ABIE53_000846 at 918.861 kb on + strand, within ABIE53_000846 at 918.862 kb on - strand, within ABIE53_000846 at 918.862 kb on - strand, within ABIE53_000846 at 918.862 kb on - strand, within ABIE53_000846 at 918.862 kb on - strand, within ABIE53_000846 at 918.862 kb on - strand, within ABIE53_000846 at 918.862 kb on - strand, within ABIE53_000846 at 918.963 kb on + strand at 918.964 kb on - strand at 918.964 kb on - strand at 918.985 kb on - strand at 918.985 kb on - strand at 918.985 kb on - strand at 918.985 kb on - strand at 919.042 kb on - strand at 919.044 kb on - strand at 919.050 kb on + strand at 919.051 kb on - strand at 919.077 kb on + strand at 919.077 kb on + strand at 919.077 kb on + strand at 919.078 kb on - strand at 919.172 kb on + strand at 919.172 kb on + strand at 919.173 kb on - strand at 919.271 kb on + strand, within ABIE53_000847 at 919.271 kb on + strand, within ABIE53_000847 at 919.271 kb on + strand, within ABIE53_000847 at 919.272 kb on - strand, within ABIE53_000847 at 919.272 kb on - strand, within ABIE53_000847 at 919.277 kb on + strand, within ABIE53_000847 at 919.277 kb on + strand, within ABIE53_000847 at 919.277 kb on + strand, within ABIE53_000847 at 919.277 kb on + strand, within ABIE53_000847 at 919.413 kb on + strand, within ABIE53_000847 at 919.413 kb on + strand, within ABIE53_000847 at 919.413 kb on + strand, within ABIE53_000847 at 919.463 kb on + strand, within ABIE53_000847 at 919.463 kb on + strand, within ABIE53_000847 at 919.464 kb on - strand, within ABIE53_000847 at 919.508 kb on + strand, within ABIE53_000847 at 919.509 kb on - strand, within ABIE53_000847 at 919.509 kb on - strand, within ABIE53_000847 at 919.509 kb on - strand, within ABIE53_000847 at 919.590 kb on - strand, within ABIE53_000847 at 919.590 kb on - strand, within ABIE53_000847 at 919.640 kb on + strand, within ABIE53_000847 at 919.640 kb on + strand, within ABIE53_000847 at 919.641 kb on - strand, within ABIE53_000847 at 919.641 kb on - strand, within ABIE53_000847 at 919.694 kb on + strand, within ABIE53_000847 at 919.694 kb on + strand, within ABIE53_000847 at 919.694 kb on + strand, within ABIE53_000847 at 919.694 kb on + strand, within ABIE53_000847 at 919.694 kb on + strand, within ABIE53_000847 at 919.695 kb on - strand, within ABIE53_000847 at 919.695 kb on - strand, within ABIE53_000847 at 919.695 kb on - strand, within ABIE53_000847 at 919.695 kb on - strand, within ABIE53_000847 at 920.066 kb on + strand, within ABIE53_000847 at 920.066 kb on + strand, within ABIE53_000847 at 920.066 kb on + strand, within ABIE53_000847 at 920.067 kb on - strand, within ABIE53_000847 at 920.067 kb on - strand, within ABIE53_000847 at 920.067 kb on - strand, within ABIE53_000847 at 920.067 kb on - strand, within ABIE53_000847 at 920.067 kb on - strand, within ABIE53_000847 at 920.106 kb on - strand, within ABIE53_000847 at 920.106 kb on - strand, within ABIE53_000847 at 920.171 kb on + strand at 920.171 kb on + strand at 920.172 kb on - strand at 920.172 kb on - strand at 920.174 kb on + strand at 920.174 kb on + strand at 920.175 kb on - strand at 920.175 kb on - strand at 920.175 kb on - strand at 920.286 kb on - strand at 920.286 kb on - strand at 920.299 kb on + strand at 920.299 kb on + strand at 920.299 kb on + strand at 920.299 kb on + strand at 920.299 kb on + strand at 920.299 kb on + strand at 920.300 kb on - strand at 920.300 kb on - strand at 920.300 kb on - strand at 920.300 kb on - strand at 920.807 kb on + strand, within ABIE53_000849 at 920.847 kb on - strand, within ABIE53_000849 at 920.847 kb on - strand, within ABIE53_000849 at 921.042 kb on + strand at 921.058 kb on - strand at 921.119 kb on + strand at 921.119 kb on + strand at 921.120 kb on - strand at 921.124 kb on + strand at 921.128 kb on + strand at 921.128 kb on + strand at 921.128 kb on + strand at 921.129 kb on - strand at 921.129 kb on - strand at 921.129 kb on - strand at 921.129 kb on - strand at 921.129 kb on - strand at 921.210 kb on + strand at 921.211 kb on - strand at 921.250 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 918,122 - +1.8 918,122 - +2.3 918,241 + +1.9 918,241 + -0.6 918,241 + +0.8 918,241 + -0.4 918,241 + +0.9 918,241 + -0.3 918,241 + -0.4 918,242 - +1.5 918,242 - +1.6 918,242 - +1.3 918,242 - +1.3 918,242 - +1.0 918,242 - +1.2 918,242 - -0.9 918,242 - +3.1 918,242 - +0.1 918,242 - +2.2 918,242 - +2.1 918,242 - +1.2 918,242 - -0.7 918,242 - +1.4 918,243 + -1.3 918,243 + +1.2 918,244 - +1.8 918,244 - +1.0 918,244 - +0.6 918,272 + +1.1 918,272 + +2.6 918,272 + -0.4 918,272 + -0.2 918,272 + -0.1 918,272 + +1.9 918,272 + +0.4 918,272 + -0.6 918,272 + -0.9 918,273 - +1.2 918,273 - +2.1 918,273 - -0.5 918,273 - +1.5 918,273 - +1.0 918,273 - -0.1 918,273 - +1.6 918,273 - +1.9 918,273 - +0.9 918,273 - +0.9 918,273 - +1.0 918,273 - +1.6 918,273 - +0.6 918,273 - +1.2 918,273 - +1.9 918,273 - +1.0 918,286 + -0.9 918,287 - +1.3 918,301 + +0.5 918,345 - +3.1 918,345 - +1.2 918,424 + -0.3 918,488 - ABIE53_000846 0.14 -0.2 918,705 + ABIE53_000846 0.53 +1.9 918,705 + ABIE53_000846 0.53 +1.3 918,705 + ABIE53_000846 0.53 -0.8 918,706 - ABIE53_000846 0.53 +1.1 918,706 - ABIE53_000846 0.53 +0.6 918,706 - ABIE53_000846 0.53 -0.0 918,861 + ABIE53_000846 0.81 +2.0 918,861 + ABIE53_000846 0.81 -1.6 918,861 + ABIE53_000846 0.81 -0.7 918,861 + ABIE53_000846 0.81 -1.2 918,861 + ABIE53_000846 0.81 -0.2 918,861 + ABIE53_000846 0.81 +0.3 918,862 - ABIE53_000846 0.81 +2.4 918,862 - ABIE53_000846 0.81 +0.9 918,862 - ABIE53_000846 0.81 +0.5 918,862 - ABIE53_000846 0.81 -0.4 918,862 - ABIE53_000846 0.81 +1.3 918,862 - ABIE53_000846 0.81 +2.9 918,963 + -0.1 918,964 - +0.8 918,964 - +0.9 918,985 - +1.5 918,985 - +0.8 918,985 - +0.9 918,985 - -0.1 919,042 - +1.2 919,044 - -1.0 919,050 + +0.3 919,051 - +0.7 919,077 + +0.3 919,077 + -1.7 919,077 + +2.1 919,078 - +1.9 919,172 + +0.4 919,172 + -0.6 919,173 - +2.2 919,271 + ABIE53_000847 0.16 +0.3 919,271 + ABIE53_000847 0.16 +2.5 919,271 + ABIE53_000847 0.16 -1.4 919,272 - ABIE53_000847 0.16 +0.5 919,272 - ABIE53_000847 0.16 +0.1 919,277 + ABIE53_000847 0.16 -0.6 919,277 + ABIE53_000847 0.16 -1.4 919,277 + ABIE53_000847 0.16 +1.7 919,277 + ABIE53_000847 0.16 +0.9 919,413 + ABIE53_000847 0.27 -0.8 919,413 + ABIE53_000847 0.27 +0.5 919,413 + ABIE53_000847 0.27 -0.7 919,463 + ABIE53_000847 0.32 +0.2 919,463 + ABIE53_000847 0.32 -0.2 919,464 - ABIE53_000847 0.32 -0.0 919,508 + ABIE53_000847 0.35 -0.8 919,509 - ABIE53_000847 0.35 +2.0 919,509 - ABIE53_000847 0.35 +0.9 919,509 - ABIE53_000847 0.35 +1.3 919,590 - ABIE53_000847 0.42 -0.2 919,590 - ABIE53_000847 0.42 +0.8 919,640 + ABIE53_000847 0.46 +1.0 919,640 + ABIE53_000847 0.46 +1.0 919,641 - ABIE53_000847 0.46 +0.2 919,641 - ABIE53_000847 0.46 -0.3 919,694 + ABIE53_000847 0.51 -1.8 919,694 + ABIE53_000847 0.51 -0.2 919,694 + ABIE53_000847 0.51 +1.0 919,694 + ABIE53_000847 0.51 -0.0 919,694 + ABIE53_000847 0.51 +0.9 919,695 - ABIE53_000847 0.51 +0.5 919,695 - ABIE53_000847 0.51 +0.3 919,695 - ABIE53_000847 0.51 -0.3 919,695 - ABIE53_000847 0.51 +1.5 920,066 + ABIE53_000847 0.82 -0.1 920,066 + ABIE53_000847 0.82 -0.4 920,066 + ABIE53_000847 0.82 +1.9 920,067 - ABIE53_000847 0.82 +1.9 920,067 - ABIE53_000847 0.82 +0.8 920,067 - ABIE53_000847 0.82 +0.1 920,067 - ABIE53_000847 0.82 +0.9 920,067 - ABIE53_000847 0.82 -0.1 920,106 - ABIE53_000847 0.85 +0.4 920,106 - ABIE53_000847 0.85 -0.2 920,171 + -0.9 920,171 + -1.9 920,172 - -1.2 920,172 - -0.0 920,174 + +1.3 920,174 + -0.7 920,175 - -0.1 920,175 - +0.3 920,175 - -0.1 920,286 - +2.9 920,286 - -0.7 920,299 + +1.2 920,299 + -0.4 920,299 + -1.0 920,299 + +0.3 920,299 + -0.3 920,299 + -0.1 920,300 - -1.3 920,300 - -1.5 920,300 - +0.5 920,300 - +0.7 920,807 + ABIE53_000849 0.30 -0.4 920,847 - ABIE53_000849 0.42 +0.2 920,847 - ABIE53_000849 0.42 -2.8 921,042 + +0.3 921,058 - -0.1 921,119 + +0.3 921,119 + +0.9 921,120 - +0.3 921,124 + +0.3 921,128 + -0.4 921,128 + +0.9 921,128 + -0.1 921,129 - +1.2 921,129 - +0.3 921,129 - +1.9 921,129 - -0.7 921,129 - -0.2 921,210 + +0.9 921,211 - -0.7 921,250 - -0.3
Or see this region's nucleotide sequence