Strain Fitness in Rahnella sp. WP5 around EX31_RS23435

Experiment: L-Serine (N); RCH2 media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS23430 and EX31_RS23435 are separated by 19 nucleotidesEX31_RS23435 and EX31_RS23440 are separated by 400 nucleotides EX31_RS23430: EX31_RS23430 - succinate dehydrogenase flavoprotein subunit, at 451,473 to 453,239 _RS23430 EX31_RS23435: EX31_RS23435 - succinate dehydrogenase iron-sulfur subunit, at 453,259 to 453,975 _RS23435 EX31_RS23440: EX31_RS23440 - 2-oxoglutarate dehydrogenase E1 component, at 454,376 to 457,183 _RS23440 Position (kb) 453 454Strain fitness (log2 ratio) -2 -1 0 1 2 3at 452.351 kb on + strand, within EX31_RS23430at 452.429 kb on + strand, within EX31_RS23430at 452.535 kb on + strand, within EX31_RS23430at 452.535 kb on + strand, within EX31_RS23430at 452.535 kb on + strand, within EX31_RS23430at 452.535 kb on + strand, within EX31_RS23430at 452.535 kb on + strand, within EX31_RS23430at 452.535 kb on + strand, within EX31_RS23430at 452.535 kb on + strand, within EX31_RS23430at 452.535 kb on + strand, within EX31_RS23430at 452.535 kb on + strand, within EX31_RS23430at 452.536 kb on - strand, within EX31_RS23430at 452.738 kb on + strand, within EX31_RS23430at 452.788 kb on + strand, within EX31_RS23430at 452.788 kb on + strand, within EX31_RS23430at 452.975 kb on + strand, within EX31_RS23430at 452.975 kb on + strand, within EX31_RS23430at 452.976 kb on - strand, within EX31_RS23430at 453.066 kb on + strandat 453.147 kb on + strandat 453.147 kb on + strandat 453.147 kb on + strandat 453.148 kb on - strandat 453.197 kb on + strandat 453.230 kb on + strandat 453.234 kb on + strandat 453.234 kb on + strandat 453.235 kb on - strandat 453.237 kb on + strandat 453.237 kb on + strandat 453.237 kb on + strandat 453.286 kb on + strandat 453.313 kb on + strandat 453.313 kb on + strandat 453.313 kb on + strandat 453.313 kb on + strandat 453.325 kb on + strandat 453.340 kb on - strand, within EX31_RS23435at 453.483 kb on + strand, within EX31_RS23435at 453.483 kb on + strand, within EX31_RS23435at 453.483 kb on + strand, within EX31_RS23435at 453.570 kb on - strand, within EX31_RS23435at 453.572 kb on + strand, within EX31_RS23435at 453.572 kb on + strand, within EX31_RS23435at 453.572 kb on + strand, within EX31_RS23435at 453.589 kb on + strand, within EX31_RS23435at 453.609 kb on + strand, within EX31_RS23435at 453.616 kb on + strand, within EX31_RS23435at 453.616 kb on + strand, within EX31_RS23435at 453.616 kb on + strand, within EX31_RS23435at 453.616 kb on + strand, within EX31_RS23435at 453.697 kb on + strand, within EX31_RS23435at 453.697 kb on + strand, within EX31_RS23435at 453.705 kb on + strand, within EX31_RS23435at 453.705 kb on + strand, within EX31_RS23435at 453.705 kb on + strand, within EX31_RS23435at 453.706 kb on - strand, within EX31_RS23435at 453.902 kb on + strand, within EX31_RS23435at 453.903 kb on - strand, within EX31_RS23435at 453.945 kb on + strandat 453.945 kb on + strandat 453.946 kb on - strandat 453.946 kb on - strandat 453.959 kb on + strandat 453.959 kb on + strandat 453.980 kb on + strandat 453.980 kb on + strandat 454.020 kb on + strandat 454.020 kb on + strandat 454.021 kb on - strandat 454.021 kb on - strandat 454.048 kb on - strandat 454.062 kb on + strandat 454.062 kb on + strandat 454.143 kb on + strandat 454.207 kb on + strandat 454.207 kb on + strandat 454.207 kb on + strandat 454.305 kb on + strandat 454.305 kb on + strandat 454.315 kb on + strandat 454.315 kb on + strandat 454.327 kb on + strandat 454.327 kb on + strandat 454.327 kb on + strandat 454.330 kb on + strandat 454.330 kb on + strandat 454.349 kb on + strandat 454.463 kb on + strandat 454.889 kb on + strand, within EX31_RS23440at 454.900 kb on + strand, within EX31_RS23440at 454.900 kb on + strand, within EX31_RS23440

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); RCH2 media; no shaking
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452,351 + EX31_RS23430 0.50 +1.4
452,429 + EX31_RS23430 0.54 -0.4
452,535 + EX31_RS23430 0.60 +1.4
452,535 + EX31_RS23430 0.60 +0.5
452,535 + EX31_RS23430 0.60 +1.3
452,535 + EX31_RS23430 0.60 +1.6
452,535 + EX31_RS23430 0.60 -0.4
452,535 + EX31_RS23430 0.60 -0.1
452,535 + EX31_RS23430 0.60 +0.2
452,535 + EX31_RS23430 0.60 -0.2
452,535 + EX31_RS23430 0.60 -1.6
452,536 - EX31_RS23430 0.60 +0.8
452,738 + EX31_RS23430 0.72 -0.6
452,788 + EX31_RS23430 0.74 +0.5
452,788 + EX31_RS23430 0.74 -0.6
452,975 + EX31_RS23430 0.85 -0.5
452,975 + EX31_RS23430 0.85 +1.3
452,976 - EX31_RS23430 0.85 +0.1
453,066 + +0.9
453,147 + -1.4
453,147 + -0.4
453,147 + -1.2
453,148 - +0.8
453,197 + +0.1
453,230 + -1.0
453,234 + -0.0
453,234 + +0.6
453,235 - -0.2
453,237 + +0.4
453,237 + -1.1
453,237 + -0.7
453,286 + +0.4
453,313 + -1.4
453,313 + -2.4
453,313 + -1.5
453,313 + -0.1
453,325 + +1.2
453,340 - EX31_RS23435 0.11 +2.7
453,483 + EX31_RS23435 0.31 +1.1
453,483 + EX31_RS23435 0.31 +0.3
453,483 + EX31_RS23435 0.31 +1.5
453,570 - EX31_RS23435 0.43 -0.1
453,572 + EX31_RS23435 0.44 -0.5
453,572 + EX31_RS23435 0.44 +0.5
453,572 + EX31_RS23435 0.44 +1.0
453,589 + EX31_RS23435 0.46 +2.6
453,609 + EX31_RS23435 0.49 +1.3
453,616 + EX31_RS23435 0.50 +2.8
453,616 + EX31_RS23435 0.50 -0.4
453,616 + EX31_RS23435 0.50 +0.8
453,616 + EX31_RS23435 0.50 -0.7
453,697 + EX31_RS23435 0.61 +0.2
453,697 + EX31_RS23435 0.61 +0.8
453,705 + EX31_RS23435 0.62 +2.6
453,705 + EX31_RS23435 0.62 +0.2
453,705 + EX31_RS23435 0.62 +0.9
453,706 - EX31_RS23435 0.62 +0.4
453,902 + EX31_RS23435 0.90 +1.0
453,903 - EX31_RS23435 0.90 +1.1
453,945 + +0.4
453,945 + -1.1
453,946 - +2.1
453,946 - +1.7
453,959 + -0.9
453,959 + +0.2
453,980 + -0.6
453,980 + +0.6
454,020 + -2.0
454,020 + -1.4
454,021 - -0.1
454,021 - +0.1
454,048 - +0.1
454,062 + +1.0
454,062 + +0.8
454,143 + +0.6
454,207 + +0.1
454,207 + -1.4
454,207 + +1.3
454,305 + -0.5
454,305 + -1.2
454,315 + -0.5
454,315 + -1.5
454,327 + +0.5
454,327 + +0.7
454,327 + -0.9
454,330 + -2.7
454,330 + -0.7
454,349 + +0.6
454,463 + -0.2
454,889 + EX31_RS23440 0.18 -0.5
454,900 + EX31_RS23440 0.19 -0.5
454,900 + EX31_RS23440 0.19 -0.2

Or see this region's nucleotide sequence