Strain Fitness in Rahnella sp. WP5 around EX31_RS22625

Experiment: L-Serine (N); RCH2 media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS22620 and EX31_RS22625 overlap by 4 nucleotidesEX31_RS22625 and EX31_RS22630 are separated by 180 nucleotidesEX31_RS22630 and EX31_RS22635 are separated by 111 nucleotides EX31_RS22620: EX31_RS22620 - 5-(carboxyamino)imidazole ribonucleotide synthase, at 280,199 to 281,263 _RS22620 EX31_RS22625: EX31_RS22625 - 5-(carboxyamino)imidazole ribonucleotide mutase, at 281,260 to 281,769 _RS22625 EX31_RS22630: EX31_RS22630 - tRNA-(ms[2]io[6]A)-hydroxylase, at 281,950 to 282,582 _RS22630 EX31_RS22635: EX31_RS22635 - UDP-2,3-diacylglucosamine diphosphatase, at 282,694 to 283,416 _RS22635 Position (kb) 281 282Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 280.497 kb on + strand, within EX31_RS22620at 280.497 kb on + strand, within EX31_RS22620at 280.497 kb on + strand, within EX31_RS22620at 280.497 kb on + strand, within EX31_RS22620at 280.497 kb on + strand, within EX31_RS22620at 280.498 kb on - strand, within EX31_RS22620at 280.498 kb on - strand, within EX31_RS22620at 280.498 kb on - strand, within EX31_RS22620at 280.498 kb on - strand, within EX31_RS22620at 280.608 kb on + strand, within EX31_RS22620at 280.608 kb on + strand, within EX31_RS22620at 280.609 kb on - strand, within EX31_RS22620at 280.609 kb on - strand, within EX31_RS22620at 280.609 kb on - strand, within EX31_RS22620at 280.609 kb on - strand, within EX31_RS22620at 280.609 kb on - strand, within EX31_RS22620at 280.735 kb on - strand, within EX31_RS22620at 280.747 kb on + strand, within EX31_RS22620at 280.748 kb on - strand, within EX31_RS22620at 280.824 kb on + strand, within EX31_RS22620at 280.825 kb on - strand, within EX31_RS22620at 280.843 kb on + strand, within EX31_RS22620at 280.843 kb on + strand, within EX31_RS22620at 280.844 kb on - strand, within EX31_RS22620at 280.938 kb on - strand, within EX31_RS22620at 281.182 kb on - strandat 281.404 kb on - strand, within EX31_RS22625at 281.404 kb on - strand, within EX31_RS22625at 281.456 kb on + strand, within EX31_RS22625at 281.614 kb on - strand, within EX31_RS22625at 281.667 kb on + strand, within EX31_RS22625at 281.668 kb on - strand, within EX31_RS22625at 281.668 kb on - strand, within EX31_RS22625at 281.775 kb on + strandat 281.775 kb on + strandat 281.775 kb on + strandat 281.775 kb on + strandat 281.776 kb on - strandat 281.798 kb on - strandat 281.821 kb on + strandat 281.916 kb on + strandat 281.916 kb on + strandat 281.916 kb on + strandat 281.916 kb on + strandat 281.917 kb on - strandat 281.918 kb on + strandat 281.918 kb on + strandat 281.918 kb on + strandat 281.918 kb on + strandat 281.918 kb on + strandat 281.918 kb on + strandat 281.918 kb on + strandat 281.918 kb on + strandat 281.918 kb on + strandat 281.918 kb on + strandat 281.918 kb on + strandat 281.918 kb on + strandat 281.919 kb on - strandat 281.919 kb on - strandat 281.919 kb on - strandat 281.919 kb on - strandat 281.919 kb on - strandat 281.919 kb on - strandat 281.919 kb on - strandat 281.919 kb on - strandat 281.919 kb on - strandat 281.949 kb on + strandat 281.963 kb on + strandat 282.060 kb on + strand, within EX31_RS22630at 282.109 kb on + strand, within EX31_RS22630at 282.110 kb on - strand, within EX31_RS22630at 282.110 kb on - strand, within EX31_RS22630at 282.110 kb on - strand, within EX31_RS22630at 282.207 kb on + strand, within EX31_RS22630at 282.207 kb on + strand, within EX31_RS22630at 282.207 kb on + strand, within EX31_RS22630at 282.210 kb on + strand, within EX31_RS22630at 282.210 kb on + strand, within EX31_RS22630at 282.210 kb on + strand, within EX31_RS22630at 282.210 kb on + strand, within EX31_RS22630at 282.210 kb on + strand, within EX31_RS22630at 282.210 kb on + strand, within EX31_RS22630at 282.210 kb on + strand, within EX31_RS22630at 282.210 kb on + strand, within EX31_RS22630at 282.210 kb on + strand, within EX31_RS22630at 282.210 kb on + strand, within EX31_RS22630at 282.210 kb on + strand, within EX31_RS22630at 282.210 kb on + strand, within EX31_RS22630at 282.211 kb on - strand, within EX31_RS22630at 282.211 kb on - strand, within EX31_RS22630at 282.211 kb on - strand, within EX31_RS22630at 282.211 kb on - strand, within EX31_RS22630at 282.214 kb on + strand, within EX31_RS22630at 282.214 kb on + strand, within EX31_RS22630at 282.214 kb on + strand, within EX31_RS22630at 282.214 kb on + strand, within EX31_RS22630at 282.214 kb on + strand, within EX31_RS22630at 282.215 kb on - strand, within EX31_RS22630at 282.215 kb on - strand, within EX31_RS22630at 282.215 kb on - strand, within EX31_RS22630at 282.215 kb on - strand, within EX31_RS22630at 282.216 kb on + strand, within EX31_RS22630at 282.261 kb on + strand, within EX31_RS22630at 282.261 kb on + strand, within EX31_RS22630at 282.285 kb on + strand, within EX31_RS22630at 282.285 kb on + strand, within EX31_RS22630at 282.286 kb on - strand, within EX31_RS22630at 282.286 kb on - strand, within EX31_RS22630at 282.286 kb on - strand, within EX31_RS22630at 282.316 kb on + strand, within EX31_RS22630at 282.316 kb on + strand, within EX31_RS22630at 282.317 kb on - strand, within EX31_RS22630at 282.430 kb on + strand, within EX31_RS22630at 282.451 kb on + strand, within EX31_RS22630at 282.452 kb on - strand, within EX31_RS22630at 282.567 kb on + strandat 282.567 kb on + strandat 282.567 kb on + strandat 282.568 kb on - strandat 282.568 kb on - strandat 282.568 kb on - strandat 282.568 kb on - strandat 282.568 kb on - strandat 282.568 kb on - strandat 282.615 kb on + strandat 282.616 kb on - strandat 282.616 kb on - strandat 282.623 kb on + strandat 282.623 kb on + strandat 282.624 kb on - strandat 282.624 kb on - strandat 282.671 kb on - strandat 282.680 kb on - strandat 282.680 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); RCH2 media; no shaking
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280,497 + EX31_RS22620 0.28 -1.3
280,497 + EX31_RS22620 0.28 -1.9
280,497 + EX31_RS22620 0.28 -2.3
280,497 + EX31_RS22620 0.28 -0.2
280,497 + EX31_RS22620 0.28 -1.3
280,498 - EX31_RS22620 0.28 -1.0
280,498 - EX31_RS22620 0.28 -2.8
280,498 - EX31_RS22620 0.28 -0.2
280,498 - EX31_RS22620 0.28 -1.4
280,608 + EX31_RS22620 0.38 -2.4
280,608 + EX31_RS22620 0.38 -2.1
280,609 - EX31_RS22620 0.38 +0.6
280,609 - EX31_RS22620 0.38 -1.0
280,609 - EX31_RS22620 0.38 -1.4
280,609 - EX31_RS22620 0.38 -2.9
280,609 - EX31_RS22620 0.38 -0.1
280,735 - EX31_RS22620 0.50 -2.2
280,747 + EX31_RS22620 0.51 -2.2
280,748 - EX31_RS22620 0.52 -2.3
280,824 + EX31_RS22620 0.59 +0.4
280,825 - EX31_RS22620 0.59 +1.1
280,843 + EX31_RS22620 0.60 +0.3
280,843 + EX31_RS22620 0.60 -1.9
280,844 - EX31_RS22620 0.61 -1.0
280,938 - EX31_RS22620 0.69 -1.2
281,182 - -1.8
281,404 - EX31_RS22625 0.28 -1.8
281,404 - EX31_RS22625 0.28 -2.5
281,456 + EX31_RS22625 0.38 -2.6
281,614 - EX31_RS22625 0.69 -0.9
281,667 + EX31_RS22625 0.80 -0.9
281,668 - EX31_RS22625 0.80 -2.4
281,668 - EX31_RS22625 0.80 -2.4
281,775 + -2.4
281,775 + -2.4
281,775 + -3.2
281,775 + -1.6
281,776 - -1.6
281,798 - -0.1
281,821 + -2.3
281,916 + +1.3
281,916 + +1.5
281,916 + +1.5
281,916 + -0.5
281,917 - +0.7
281,918 + +0.6
281,918 + +0.4
281,918 + -0.8
281,918 + -2.8
281,918 + -1.4
281,918 + +1.3
281,918 + +1.1
281,918 + +0.1
281,918 + -0.2
281,918 + -0.2
281,918 + -0.4
281,918 + -0.3
281,919 - +0.8
281,919 - -1.2
281,919 - -0.8
281,919 - +0.4
281,919 - -1.0
281,919 - +0.2
281,919 - -0.0
281,919 - +0.9
281,919 - +1.0
281,949 + -1.6
281,963 + +0.0
282,060 + EX31_RS22630 0.17 -0.2
282,109 + EX31_RS22630 0.25 +0.6
282,110 - EX31_RS22630 0.25 +0.7
282,110 - EX31_RS22630 0.25 +0.6
282,110 - EX31_RS22630 0.25 -0.7
282,207 + EX31_RS22630 0.41 -0.4
282,207 + EX31_RS22630 0.41 +0.4
282,207 + EX31_RS22630 0.41 +0.8
282,210 + EX31_RS22630 0.41 +0.1
282,210 + EX31_RS22630 0.41 +0.8
282,210 + EX31_RS22630 0.41 +0.1
282,210 + EX31_RS22630 0.41 +0.3
282,210 + EX31_RS22630 0.41 +1.4
282,210 + EX31_RS22630 0.41 +0.1
282,210 + EX31_RS22630 0.41 -0.3
282,210 + EX31_RS22630 0.41 +1.4
282,210 + EX31_RS22630 0.41 -1.0
282,210 + EX31_RS22630 0.41 +0.6
282,210 + EX31_RS22630 0.41 +0.9
282,210 + EX31_RS22630 0.41 +0.1
282,211 - EX31_RS22630 0.41 -1.3
282,211 - EX31_RS22630 0.41 -0.5
282,211 - EX31_RS22630 0.41 +0.6
282,211 - EX31_RS22630 0.41 +1.4
282,214 + EX31_RS22630 0.42 +0.1
282,214 + EX31_RS22630 0.42 -0.3
282,214 + EX31_RS22630 0.42 -0.6
282,214 + EX31_RS22630 0.42 +1.1
282,214 + EX31_RS22630 0.42 -1.0
282,215 - EX31_RS22630 0.42 -2.0
282,215 - EX31_RS22630 0.42 +3.1
282,215 - EX31_RS22630 0.42 +0.8
282,215 - EX31_RS22630 0.42 +1.3
282,216 + EX31_RS22630 0.42 +1.0
282,261 + EX31_RS22630 0.49 +0.6
282,261 + EX31_RS22630 0.49 +0.3
282,285 + EX31_RS22630 0.53 +0.3
282,285 + EX31_RS22630 0.53 -1.3
282,286 - EX31_RS22630 0.53 -0.7
282,286 - EX31_RS22630 0.53 +0.8
282,286 - EX31_RS22630 0.53 -1.2
282,316 + EX31_RS22630 0.58 +2.4
282,316 + EX31_RS22630 0.58 +0.0
282,317 - EX31_RS22630 0.58 -1.5
282,430 + EX31_RS22630 0.76 +0.6
282,451 + EX31_RS22630 0.79 -0.6
282,452 - EX31_RS22630 0.79 -0.3
282,567 + -0.0
282,567 + +1.6
282,567 + +0.3
282,568 - -0.1
282,568 - -1.8
282,568 - -0.3
282,568 - +0.9
282,568 - -0.3
282,568 - +1.1
282,615 + -0.2
282,616 - +1.7
282,616 - +0.5
282,623 + -1.1
282,623 + +0.6
282,624 - -0.4
282,624 - -0.8
282,671 - -0.6
282,680 - +0.3
282,680 - +0.3

Or see this region's nucleotide sequence