Strain Fitness in Rahnella sp. WP5 around EX31_RS15745

Experiment: L-Serine (N); RCH2 media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS15740 and EX31_RS15745 are separated by 27 nucleotidesEX31_RS15745 and EX31_RS15750 overlap by 14 nucleotidesEX31_RS15750 and EX31_RS15755 are separated by 199 nucleotides EX31_RS15740: EX31_RS15740 - IS3 family transposase, at 74 to 1,248 _RS15740 EX31_RS15745: EX31_RS15745 - hypothetical protein, at 1,276 to 1,935 _RS15745 EX31_RS15750: EX31_RS15750 - site-specific DNA-methyltransferase, at 1,922 to 2,647 _RS15750 EX31_RS15755: EX31_RS15755 - hypothetical protein, at 2,847 to 3,674 _RS15755 Position (kb) 1 2Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1.253 kb on + strandat 1.253 kb on + strandat 1.258 kb on + strandat 1.258 kb on + strandat 1.258 kb on + strandat 1.258 kb on + strandat 1.258 kb on + strandat 1.258 kb on + strandat 1.258 kb on + strandat 1.258 kb on + strandat 1.258 kb on + strandat 1.258 kb on + strandat 1.258 kb on + strandat 1.258 kb on + strandat 1.258 kb on + strandat 1.258 kb on + strandat 1.258 kb on + strandat 1.258 kb on + strandat 1.258 kb on + strandat 1.258 kb on + strandat 1.259 kb on - strandat 1.259 kb on - strandat 1.259 kb on - strandat 1.259 kb on - strandat 1.259 kb on - strandat 1.259 kb on - strandat 1.259 kb on - strandat 1.259 kb on - strandat 1.262 kb on + strandat 1.262 kb on + strandat 1.262 kb on + strandat 1.262 kb on + strandat 1.262 kb on + strandat 1.262 kb on + strandat 1.263 kb on - strandat 1.263 kb on - strandat 1.263 kb on - strandat 1.263 kb on - strandat 1.263 kb on - strandat 1.263 kb on - strandat 1.263 kb on - strandat 1.270 kb on + strandat 1.270 kb on + strandat 1.270 kb on + strandat 1.271 kb on - strandat 1.271 kb on - strandat 1.271 kb on - strandat 1.272 kb on + strandat 1.272 kb on + strandat 1.272 kb on + strandat 1.272 kb on + strandat 1.273 kb on - strandat 1.273 kb on - strandat 1.273 kb on - strandat 1.273 kb on - strandat 1.273 kb on - strandat 1.273 kb on - strandat 1.290 kb on + strandat 1.319 kb on - strandat 1.319 kb on - strandat 1.319 kb on - strandat 1.319 kb on - strandat 1.336 kb on - strandat 1.344 kb on + strand, within EX31_RS15745at 1.345 kb on - strand, within EX31_RS15745at 1.355 kb on + strand, within EX31_RS15745at 1.355 kb on + strand, within EX31_RS15745at 1.355 kb on + strand, within EX31_RS15745at 1.363 kb on - strand, within EX31_RS15745at 1.423 kb on - strand, within EX31_RS15745at 1.484 kb on - strand, within EX31_RS15745at 1.509 kb on + strand, within EX31_RS15745at 1.531 kb on + strand, within EX31_RS15745at 1.532 kb on - strand, within EX31_RS15745at 1.560 kb on - strand, within EX31_RS15745at 1.560 kb on - strand, within EX31_RS15745at 1.560 kb on - strand, within EX31_RS15745at 1.560 kb on - strand, within EX31_RS15745at 1.605 kb on - strand, within EX31_RS15745at 1.605 kb on - strand, within EX31_RS15745at 1.605 kb on - strand, within EX31_RS15745at 1.605 kb on - strand, within EX31_RS15745at 1.611 kb on - strand, within EX31_RS15745at 1.624 kb on + strand, within EX31_RS15745at 1.624 kb on + strand, within EX31_RS15745at 1.625 kb on - strand, within EX31_RS15745at 1.625 kb on - strand, within EX31_RS15745at 1.625 kb on - strand, within EX31_RS15745at 1.626 kb on + strand, within EX31_RS15745at 1.626 kb on + strand, within EX31_RS15745at 1.626 kb on + strand, within EX31_RS15745at 1.626 kb on + strand, within EX31_RS15745at 1.626 kb on + strand, within EX31_RS15745at 1.627 kb on - strand, within EX31_RS15745at 1.627 kb on - strand, within EX31_RS15745at 1.627 kb on - strand, within EX31_RS15745at 1.627 kb on - strand, within EX31_RS15745at 1.627 kb on - strand, within EX31_RS15745at 1.627 kb on - strand, within EX31_RS15745at 1.627 kb on - strand, within EX31_RS15745at 1.627 kb on - strand, within EX31_RS15745at 1.627 kb on - strand, within EX31_RS15745at 1.677 kb on + strand, within EX31_RS15745at 1.722 kb on + strand, within EX31_RS15745at 1.723 kb on - strand, within EX31_RS15745at 1.723 kb on - strand, within EX31_RS15745at 1.737 kb on + strand, within EX31_RS15745at 1.738 kb on - strand, within EX31_RS15745at 1.738 kb on - strand, within EX31_RS15745at 1.758 kb on + strand, within EX31_RS15745at 1.759 kb on - strand, within EX31_RS15745at 1.759 kb on - strand, within EX31_RS15745at 1.803 kb on + strand, within EX31_RS15745at 1.803 kb on + strand, within EX31_RS15745at 1.856 kb on + strand, within EX31_RS15745at 1.857 kb on - strand, within EX31_RS15745at 1.936 kb on + strandat 1.946 kb on + strandat 1.946 kb on + strandat 1.963 kb on - strandat 1.973 kb on - strandat 1.974 kb on + strandat 1.975 kb on - strandat 1.975 kb on - strandat 1.979 kb on - strandat 2.014 kb on + strand, within EX31_RS15750at 2.015 kb on - strand, within EX31_RS15750at 2.015 kb on - strand, within EX31_RS15750at 2.015 kb on - strand, within EX31_RS15750at 2.030 kb on + strand, within EX31_RS15750at 2.030 kb on + strand, within EX31_RS15750at 2.033 kb on - strand, within EX31_RS15750at 2.068 kb on - strand, within EX31_RS15750at 2.076 kb on + strand, within EX31_RS15750at 2.080 kb on + strand, within EX31_RS15750at 2.083 kb on + strand, within EX31_RS15750at 2.106 kb on + strand, within EX31_RS15750at 2.116 kb on + strand, within EX31_RS15750at 2.116 kb on + strand, within EX31_RS15750at 2.183 kb on + strand, within EX31_RS15750at 2.208 kb on - strand, within EX31_RS15750at 2.266 kb on + strand, within EX31_RS15750at 2.266 kb on + strand, within EX31_RS15750at 2.267 kb on - strand, within EX31_RS15750at 2.268 kb on + strand, within EX31_RS15750at 2.268 kb on + strand, within EX31_RS15750at 2.268 kb on + strand, within EX31_RS15750at 2.268 kb on + strand, within EX31_RS15750at 2.269 kb on - strand, within EX31_RS15750at 2.269 kb on - strand, within EX31_RS15750at 2.269 kb on - strand, within EX31_RS15750at 2.269 kb on - strand, within EX31_RS15750at 2.269 kb on - strand, within EX31_RS15750at 2.346 kb on + strand, within EX31_RS15750at 2.351 kb on + strand, within EX31_RS15750at 2.351 kb on + strand, within EX31_RS15750at 2.351 kb on + strand, within EX31_RS15750at 2.351 kb on + strand, within EX31_RS15750at 2.351 kb on + strand, within EX31_RS15750at 2.352 kb on - strand, within EX31_RS15750at 2.353 kb on + strand, within EX31_RS15750at 2.353 kb on + strand, within EX31_RS15750at 2.354 kb on - strand, within EX31_RS15750at 2.354 kb on - strand, within EX31_RS15750at 2.354 kb on - strand, within EX31_RS15750at 2.354 kb on - strand, within EX31_RS15750at 2.453 kb on + strand, within EX31_RS15750at 2.455 kb on + strand, within EX31_RS15750at 2.458 kb on - strand, within EX31_RS15750at 2.491 kb on + strand, within EX31_RS15750at 2.493 kb on + strand, within EX31_RS15750at 2.493 kb on + strand, within EX31_RS15750at 2.493 kb on + strand, within EX31_RS15750at 2.493 kb on + strand, within EX31_RS15750at 2.494 kb on - strand, within EX31_RS15750at 2.494 kb on - strand, within EX31_RS15750at 2.494 kb on - strand, within EX31_RS15750at 2.494 kb on - strand, within EX31_RS15750at 2.496 kb on + strand, within EX31_RS15750at 2.506 kb on + strand, within EX31_RS15750at 2.507 kb on - strand, within EX31_RS15750at 2.507 kb on - strand, within EX31_RS15750at 2.535 kb on + strand, within EX31_RS15750at 2.535 kb on + strand, within EX31_RS15750at 2.535 kb on + strand, within EX31_RS15750at 2.536 kb on - strand, within EX31_RS15750at 2.536 kb on - strand, within EX31_RS15750at 2.554 kb on + strand, within EX31_RS15750at 2.572 kb on + strand, within EX31_RS15750at 2.585 kb on + strandat 2.830 kb on + strandat 2.833 kb on - strandat 2.875 kb on + strandat 2.905 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); RCH2 media; no shaking
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1,253 + -0.5
1,253 + +0.6
1,258 + +0.5
1,258 + +0.5
1,258 + -0.2
1,258 + +0.2
1,258 + -0.1
1,258 + +0.9
1,258 + +0.5
1,258 + +0.1
1,258 + +0.2
1,258 + +0.6
1,258 + -0.8
1,258 + +0.4
1,258 + -0.5
1,258 + +1.0
1,258 + -3.2
1,258 + +1.0
1,258 + +0.7
1,258 + -0.1
1,259 - +0.4
1,259 - +1.0
1,259 - +0.9
1,259 - +0.3
1,259 - -0.5
1,259 - +0.3
1,259 - +0.1
1,259 - -0.2
1,262 + -0.7
1,262 + -0.4
1,262 + +2.0
1,262 + +0.0
1,262 + +0.6
1,262 + -0.4
1,263 - +0.6
1,263 - -0.6
1,263 - -0.5
1,263 - -2.2
1,263 - -0.9
1,263 - -0.6
1,263 - -1.3
1,270 + +2.9
1,270 + +1.3
1,270 + -1.0
1,271 - -0.4
1,271 - -0.9
1,271 - +0.6
1,272 + +0.5
1,272 + +0.0
1,272 + -2.0
1,272 + +0.6
1,273 - +0.4
1,273 - +0.1
1,273 - +0.5
1,273 - +0.6
1,273 - +0.2
1,273 - -0.3
1,290 + +0.3
1,319 - +0.3
1,319 - -1.5
1,319 - -1.9
1,319 - -0.0
1,336 - +0.3
1,344 + EX31_RS15745 0.10 -0.7
1,345 - EX31_RS15745 0.10 +1.0
1,355 + EX31_RS15745 0.12 -0.1
1,355 + EX31_RS15745 0.12 -0.2
1,355 + EX31_RS15745 0.12 -0.5
1,363 - EX31_RS15745 0.13 +0.4
1,423 - EX31_RS15745 0.22 -1.2
1,484 - EX31_RS15745 0.32 +0.3
1,509 + EX31_RS15745 0.35 +0.7
1,531 + EX31_RS15745 0.39 +0.8
1,532 - EX31_RS15745 0.39 +0.3
1,560 - EX31_RS15745 0.43 +0.1
1,560 - EX31_RS15745 0.43 +0.4
1,560 - EX31_RS15745 0.43 -0.4
1,560 - EX31_RS15745 0.43 -1.1
1,605 - EX31_RS15745 0.50 -0.1
1,605 - EX31_RS15745 0.50 +0.3
1,605 - EX31_RS15745 0.50 -0.2
1,605 - EX31_RS15745 0.50 +0.6
1,611 - EX31_RS15745 0.51 +1.6
1,624 + EX31_RS15745 0.53 +0.7
1,624 + EX31_RS15745 0.53 +0.5
1,625 - EX31_RS15745 0.53 +0.7
1,625 - EX31_RS15745 0.53 +0.7
1,625 - EX31_RS15745 0.53 -0.0
1,626 + EX31_RS15745 0.53 -0.1
1,626 + EX31_RS15745 0.53 +2.9
1,626 + EX31_RS15745 0.53 +0.1
1,626 + EX31_RS15745 0.53 -0.3
1,626 + EX31_RS15745 0.53 -0.5
1,627 - EX31_RS15745 0.53 +0.7
1,627 - EX31_RS15745 0.53 -1.1
1,627 - EX31_RS15745 0.53 +1.3
1,627 - EX31_RS15745 0.53 -0.8
1,627 - EX31_RS15745 0.53 +1.0
1,627 - EX31_RS15745 0.53 +0.5
1,627 - EX31_RS15745 0.53 -1.0
1,627 - EX31_RS15745 0.53 +0.6
1,627 - EX31_RS15745 0.53 +0.8
1,677 + EX31_RS15745 0.61 -0.3
1,722 + EX31_RS15745 0.68 -0.2
1,723 - EX31_RS15745 0.68 +0.3
1,723 - EX31_RS15745 0.68 +0.5
1,737 + EX31_RS15745 0.70 +0.3
1,738 - EX31_RS15745 0.70 -0.2
1,738 - EX31_RS15745 0.70 -1.6
1,758 + EX31_RS15745 0.73 -0.2
1,759 - EX31_RS15745 0.73 -0.6
1,759 - EX31_RS15745 0.73 -0.4
1,803 + EX31_RS15745 0.80 -1.7
1,803 + EX31_RS15745 0.80 +0.7
1,856 + EX31_RS15745 0.88 +0.6
1,857 - EX31_RS15745 0.88 +0.5
1,936 + -1.2
1,946 + +0.4
1,946 + +0.3
1,963 - +0.4
1,973 - -1.1
1,974 + +0.2
1,975 - +0.1
1,975 - +0.5
1,979 - +0.9
2,014 + EX31_RS15750 0.13 +1.1
2,015 - EX31_RS15750 0.13 -0.2
2,015 - EX31_RS15750 0.13 -1.0
2,015 - EX31_RS15750 0.13 +0.6
2,030 + EX31_RS15750 0.15 +0.8
2,030 + EX31_RS15750 0.15 -0.2
2,033 - EX31_RS15750 0.15 -0.2
2,068 - EX31_RS15750 0.20 +1.4
2,076 + EX31_RS15750 0.21 +1.5
2,080 + EX31_RS15750 0.22 -0.1
2,083 + EX31_RS15750 0.22 -1.3
2,106 + EX31_RS15750 0.25 +0.7
2,116 + EX31_RS15750 0.27 +0.4
2,116 + EX31_RS15750 0.27 +0.3
2,183 + EX31_RS15750 0.36 -0.2
2,208 - EX31_RS15750 0.39 -2.1
2,266 + EX31_RS15750 0.47 +0.4
2,266 + EX31_RS15750 0.47 +0.2
2,267 - EX31_RS15750 0.48 +0.9
2,268 + EX31_RS15750 0.48 -1.4
2,268 + EX31_RS15750 0.48 -0.7
2,268 + EX31_RS15750 0.48 +0.4
2,268 + EX31_RS15750 0.48 +0.9
2,269 - EX31_RS15750 0.48 +0.1
2,269 - EX31_RS15750 0.48 -1.2
2,269 - EX31_RS15750 0.48 +0.5
2,269 - EX31_RS15750 0.48 +0.6
2,269 - EX31_RS15750 0.48 +0.4
2,346 + EX31_RS15750 0.58 +2.6
2,351 + EX31_RS15750 0.59 +0.3
2,351 + EX31_RS15750 0.59 -1.0
2,351 + EX31_RS15750 0.59 +1.1
2,351 + EX31_RS15750 0.59 -0.5
2,351 + EX31_RS15750 0.59 +1.1
2,352 - EX31_RS15750 0.59 +1.1
2,353 + EX31_RS15750 0.59 +0.6
2,353 + EX31_RS15750 0.59 +2.2
2,354 - EX31_RS15750 0.60 -0.6
2,354 - EX31_RS15750 0.60 -0.3
2,354 - EX31_RS15750 0.60 +0.2
2,354 - EX31_RS15750 0.60 -0.1
2,453 + EX31_RS15750 0.73 +0.9
2,455 + EX31_RS15750 0.73 +0.8
2,458 - EX31_RS15750 0.74 +1.0
2,491 + EX31_RS15750 0.78 -0.1
2,493 + EX31_RS15750 0.79 -0.2
2,493 + EX31_RS15750 0.79 +0.7
2,493 + EX31_RS15750 0.79 +0.8
2,493 + EX31_RS15750 0.79 -0.1
2,494 - EX31_RS15750 0.79 -1.5
2,494 - EX31_RS15750 0.79 -1.2
2,494 - EX31_RS15750 0.79 +0.3
2,494 - EX31_RS15750 0.79 +0.7
2,496 + EX31_RS15750 0.79 -0.2
2,506 + EX31_RS15750 0.80 -0.6
2,507 - EX31_RS15750 0.81 -0.1
2,507 - EX31_RS15750 0.81 +0.5
2,535 + EX31_RS15750 0.84 +0.4
2,535 + EX31_RS15750 0.84 -0.9
2,535 + EX31_RS15750 0.84 +1.0
2,536 - EX31_RS15750 0.85 -0.3
2,536 - EX31_RS15750 0.85 +0.6
2,554 + EX31_RS15750 0.87 +0.4
2,572 + EX31_RS15750 0.90 +0.2
2,585 + +0.9
2,830 + -1.1
2,833 - -0.2
2,875 + +1.3
2,905 - -1.0

Or see this region's nucleotide sequence