Strain Fitness in Rahnella sp. WP5 around EX31_RS09555

Experiment: L-Serine (N); RCH2 media; no shaking

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS09545 and EX31_RS09550 overlap by 8 nucleotidesEX31_RS09550 and EX31_RS09555 overlap by 1 nucleotidesEX31_RS09555 and EX31_RS09560 are separated by 21 nucleotidesEX31_RS09560 and EX31_RS09565 overlap by 4 nucleotides EX31_RS09545: EX31_RS09545 - flagellar motor switch protein FliG, at 113,787 to 114,779 _RS09545 EX31_RS09550: EX31_RS09550 - flagellar assembly protein FliH, at 114,772 to 115,557 _RS09550 EX31_RS09555: EX31_RS09555 - flagellum-specific ATP synthase FliI, at 115,557 to 116,921 _RS09555 EX31_RS09560: EX31_RS09560 - flagella biosynthesis chaperone FliJ, at 116,943 to 117,389 _RS09560 EX31_RS09565: EX31_RS09565 - flagellar hook-length control protein FliK, at 117,386 to 118,774 _RS09565 Position (kb) 115 116 117Strain fitness (log2 ratio) -2 -1 0 1 2 3at 114.674 kb on + strand, within EX31_RS09545at 114.674 kb on + strand, within EX31_RS09545at 114.674 kb on + strand, within EX31_RS09545at 114.674 kb on + strand, within EX31_RS09545at 114.675 kb on - strand, within EX31_RS09545at 114.675 kb on - strand, within EX31_RS09545at 114.771 kb on + strandat 114.772 kb on - strandat 114.772 kb on - strandat 114.786 kb on + strandat 114.786 kb on + strandat 114.790 kb on - strandat 114.790 kb on - strandat 114.987 kb on - strand, within EX31_RS09550at 115.170 kb on + strand, within EX31_RS09550at 115.171 kb on - strand, within EX31_RS09550at 115.320 kb on + strand, within EX31_RS09550at 115.320 kb on + strand, within EX31_RS09550at 115.694 kb on - strand, within EX31_RS09555at 115.839 kb on + strand, within EX31_RS09555at 115.839 kb on + strand, within EX31_RS09555at 115.839 kb on + strand, within EX31_RS09555at 115.839 kb on + strand, within EX31_RS09555at 115.915 kb on + strand, within EX31_RS09555at 115.915 kb on + strand, within EX31_RS09555at 115.915 kb on + strand, within EX31_RS09555at 115.915 kb on + strand, within EX31_RS09555at 115.915 kb on + strand, within EX31_RS09555at 116.287 kb on + strand, within EX31_RS09555at 116.287 kb on + strand, within EX31_RS09555at 116.287 kb on + strand, within EX31_RS09555at 116.287 kb on + strand, within EX31_RS09555at 116.288 kb on - strand, within EX31_RS09555at 116.288 kb on - strand, within EX31_RS09555at 116.291 kb on + strand, within EX31_RS09555at 116.291 kb on + strand, within EX31_RS09555at 116.291 kb on + strand, within EX31_RS09555at 116.292 kb on - strand, within EX31_RS09555at 116.292 kb on - strand, within EX31_RS09555at 116.353 kb on + strand, within EX31_RS09555at 116.443 kb on - strand, within EX31_RS09555at 116.530 kb on - strand, within EX31_RS09555at 116.530 kb on - strand, within EX31_RS09555at 116.536 kb on + strand, within EX31_RS09555at 116.536 kb on + strand, within EX31_RS09555at 116.537 kb on - strand, within EX31_RS09555at 116.690 kb on + strand, within EX31_RS09555at 116.745 kb on + strand, within EX31_RS09555at 116.746 kb on - strand, within EX31_RS09555at 116.781 kb on + strand, within EX31_RS09555at 116.877 kb on + strandat 116.877 kb on + strandat 116.877 kb on + strandat 116.877 kb on + strandat 116.877 kb on + strandat 116.877 kb on + strandat 116.877 kb on + strandat 116.878 kb on - strandat 116.878 kb on - strandat 116.878 kb on - strandat 116.878 kb on - strandat 116.878 kb on - strandat 116.930 kb on - strandat 116.940 kb on + strandat 117.075 kb on + strand, within EX31_RS09560at 117.075 kb on + strand, within EX31_RS09560at 117.087 kb on + strand, within EX31_RS09560at 117.202 kb on + strand, within EX31_RS09560at 117.202 kb on + strand, within EX31_RS09560at 117.202 kb on + strand, within EX31_RS09560at 117.274 kb on - strand, within EX31_RS09560at 117.464 kb on - strandat 117.466 kb on + strandat 117.467 kb on - strandat 117.583 kb on + strand, within EX31_RS09565

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); RCH2 media; no shaking
remove
114,674 + EX31_RS09545 0.89 +0.5
114,674 + EX31_RS09545 0.89 +1.0
114,674 + EX31_RS09545 0.89 -0.0
114,674 + EX31_RS09545 0.89 +0.9
114,675 - EX31_RS09545 0.89 +1.3
114,675 - EX31_RS09545 0.89 -0.3
114,771 + +0.6
114,772 - -0.2
114,772 - +0.3
114,786 + -0.1
114,786 + +0.1
114,790 - +1.2
114,790 - -0.0
114,987 - EX31_RS09550 0.27 +0.9
115,170 + EX31_RS09550 0.51 +0.5
115,171 - EX31_RS09550 0.51 +2.0
115,320 + EX31_RS09550 0.70 -0.1
115,320 + EX31_RS09550 0.70 -2.0
115,694 - EX31_RS09555 0.10 +1.5
115,839 + EX31_RS09555 0.21 +0.6
115,839 + EX31_RS09555 0.21 -1.1
115,839 + EX31_RS09555 0.21 +0.2
115,839 + EX31_RS09555 0.21 +0.5
115,915 + EX31_RS09555 0.26 +0.7
115,915 + EX31_RS09555 0.26 +1.1
115,915 + EX31_RS09555 0.26 -0.4
115,915 + EX31_RS09555 0.26 +0.4
115,915 + EX31_RS09555 0.26 -0.0
116,287 + EX31_RS09555 0.53 -1.1
116,287 + EX31_RS09555 0.53 +1.0
116,287 + EX31_RS09555 0.53 -0.1
116,287 + EX31_RS09555 0.53 +0.3
116,288 - EX31_RS09555 0.54 -0.9
116,288 - EX31_RS09555 0.54 +0.1
116,291 + EX31_RS09555 0.54 +1.4
116,291 + EX31_RS09555 0.54 +1.1
116,291 + EX31_RS09555 0.54 -1.4
116,292 - EX31_RS09555 0.54 +1.3
116,292 - EX31_RS09555 0.54 +1.4
116,353 + EX31_RS09555 0.58 +0.1
116,443 - EX31_RS09555 0.65 +0.4
116,530 - EX31_RS09555 0.71 +0.1
116,530 - EX31_RS09555 0.71 +0.7
116,536 + EX31_RS09555 0.72 -0.4
116,536 + EX31_RS09555 0.72 -1.4
116,537 - EX31_RS09555 0.72 +0.5
116,690 + EX31_RS09555 0.83 +0.0
116,745 + EX31_RS09555 0.87 +0.9
116,746 - EX31_RS09555 0.87 +1.7
116,781 + EX31_RS09555 0.90 +0.9
116,877 + +0.2
116,877 + +1.6
116,877 + +1.7
116,877 + -1.1
116,877 + +0.5
116,877 + +1.0
116,877 + +1.7
116,878 - +0.1
116,878 - +1.3
116,878 - +0.7
116,878 - +2.8
116,878 - +0.7
116,930 - +0.7
116,940 + +1.7
117,075 + EX31_RS09560 0.30 +1.9
117,075 + EX31_RS09560 0.30 +0.7
117,087 + EX31_RS09560 0.32 +0.9
117,202 + EX31_RS09560 0.58 -0.5
117,202 + EX31_RS09560 0.58 -0.1
117,202 + EX31_RS09560 0.58 -0.4
117,274 - EX31_RS09560 0.74 -0.3
117,464 - +1.9
117,466 + +0.0
117,467 - -0.3
117,583 + EX31_RS09565 0.14 +1.0

Or see this region's nucleotide sequence