Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS16100

Experiment: R2A with Chloramphenicol 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chloramphenicol 0.001 mg/ml
4,045,481	-				-0.4
4,045,481	-				+0.2
4,045,578	-				-0.2
4,045,580	-				-0.7
4,045,584	+				+0.5
4,045,585	-				-0.1
4,045,628	+				+0.4
4,045,656	+				+1.1
4,045,657	-				+0.2
4,045,741	+				+0.2
4,045,820	+				+0.2
4,045,820	+				+0.4
4,045,852	+				-0.0
4,045,856	+				-0.3
4,045,910	+				+0.9
4,045,944	-				-0.1
4,045,949	-				+0.5
4,045,999	+		CA265_RS16100	0.13	-0.2
4,046,042	-		CA265_RS16100	0.16	+0.2
4,046,042	-		CA265_RS16100	0.16	+0.0
4,046,062	+		CA265_RS16100	0.18	-0.4
4,046,086	-		CA265_RS16100	0.20	-0.4
4,046,089	-		CA265_RS16100	0.20	+0.1
4,046,094	+		CA265_RS16100	0.20	+0.5
4,046,104	-		CA265_RS16100	0.21	-2.7
4,046,153	-		CA265_RS16100	0.25	+0.2
4,046,171	+		CA265_RS16100	0.26	-0.5
4,046,172	-		CA265_RS16100	0.26	+0.3
4,046,236	+		CA265_RS16100	0.31	-0.2
4,046,237	-				-0.7
4,046,242	-		CA265_RS16100	0.31	+1.2
4,046,464	+		CA265_RS16100	0.48	+0.3
4,046,530	-		CA265_RS16100	0.53	-0.4
4,046,546	+		CA265_RS16100	0.54	-0.2
4,046,582	-		CA265_RS16100	0.57	-0.1
4,046,586	-		CA265_RS16100	0.57	+1.6
4,046,626	-		CA265_RS16100	0.60	-0.6
4,046,688	+		CA265_RS16100	0.65	-0.4
4,046,730	-		CA265_RS16100	0.68	-0.3
4,046,730	-		CA265_RS16100	0.68	+0.4
4,046,814	-		CA265_RS16100	0.74	+0.7
4,046,814	-		CA265_RS16100	0.74	-0.1
4,046,860	-		CA265_RS16100	0.78	-2.4
4,046,896	+		CA265_RS16100	0.80	-0.6
4,046,897	-		CA265_RS16100	0.80	+1.0
4,046,992	+		CA265_RS16100	0.87	-0.2
4,047,012	+		CA265_RS16100	0.89	+0.2
4,047,013	-		CA265_RS16100	0.89	+0.1
4,047,013	-		CA265_RS16100	0.89	-0.3
4,047,013	-		CA265_RS16100	0.89	-1.0
4,047,013	-		CA265_RS16100	0.89	-0.0
4,047,099	-				+0.2
4,047,148	-				-0.5
4,047,206	-		CA265_RS16105	0.28	+1.1
4,047,206	-		CA265_RS16105	0.28	+0.5
4,047,270	+		CA265_RS16105	0.51	+0.3
4,047,275	-		CA265_RS16105	0.53	-0.1
4,047,394	+				-0.0
4,047,478	-				+1.0
4,047,496	+				+0.1
4,047,517	-				+0.0
4,047,568	-		CA265_RS16110	0.13	-0.6
4,047,616	+		CA265_RS16110	0.16	+0.2
4,047,616	+		CA265_RS16110	0.16	+0.6
4,047,616	+		CA265_RS16110	0.16	-0.1
4,047,636	+		CA265_RS16110	0.18	-0.1
4,047,636	+		CA265_RS16110	0.18	-0.9
4,047,681	+		CA265_RS16110	0.21	-0.3
4,047,696	+		CA265_RS16110	0.22	-0.0
4,047,814	+		CA265_RS16110	0.31	-0.2
4,047,815	-		CA265_RS16110	0.31	-0.1
4,047,815	-		CA265_RS16110	0.31	-1.1
4,047,815	-		CA265_RS16110	0.31	-0.1
4,047,816	+		CA265_RS16110	0.31	+1.6
4,047,816	+		CA265_RS16110	0.31	+0.1
4,047,826	+		CA265_RS16110	0.32	+0.0
4,047,826	+		CA265_RS16110	0.32	-0.8
4,047,849	-		CA265_RS16110	0.34	+0.7
4,048,013	+		CA265_RS16110	0.46	-0.2
4,048,148	-		CA265_RS16110	0.56	+0.0
4,048,150	+		CA265_RS16110	0.56	-1.0
4,048,150	+				+0.3
4,048,157	+		CA265_RS16110	0.57	-0.3