Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS07135

Experiment: R2A with Chloramphenicol 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chloramphenicol 0.001 mg/ml
1,780,239	+				-0.6
1,780,315	-				+0.4
1,780,334	-				+0.9
1,780,358	+				-1.0
1,780,358	+				+0.4
1,780,359	-				-0.1
1,780,359	-				-0.7
1,780,359	-				+0.3
1,780,363	-				-0.9
1,780,388	-		CA265_RS07130	0.12	-0.3
1,780,403	+		CA265_RS07130	0.14	-0.5
1,780,413	-		CA265_RS07130	0.15	-0.4
1,780,413	-		CA265_RS07130	0.15	+0.1
1,780,463	+		CA265_RS07130	0.21	+0.1
1,780,489	-		CA265_RS07130	0.24	-0.8
1,780,502	-		CA265_RS07130	0.26	-1.3
1,780,511	+		CA265_RS07130	0.27	-0.6
1,780,512	-		CA265_RS07130	0.27	+0.6
1,780,568	+		CA265_RS07130	0.34	+0.7
1,780,569	-		CA265_RS07130	0.34	+0.8
1,780,594	+		CA265_RS07130	0.37	-0.5
1,780,594	+		CA265_RS07130	0.37	+2.7
1,780,595	-		CA265_RS07130	0.37	+0.3
1,780,671	+		CA265_RS07130	0.46	+0.2
1,780,672	-		CA265_RS07130	0.46	-0.3
1,780,692	+		CA265_RS07130	0.49	-0.3
1,780,692	+		CA265_RS07130	0.49	-0.5
1,780,693	-		CA265_RS07130	0.49	+0.1
1,780,693	-		CA265_RS07130	0.49	-0.5
1,780,694	+		CA265_RS07130	0.49	+0.1
1,780,695	-		CA265_RS07130	0.49	-0.3
1,780,812	+		CA265_RS07130	0.63	+2.0
1,780,812	+		CA265_RS07130	0.63	+0.1
1,780,813	-		CA265_RS07130	0.63	-0.3
1,780,941	-		CA265_RS07130	0.78	+0.2
1,780,941	-		CA265_RS07130	0.78	+0.0
1,780,983	+		CA265_RS07130	0.84	-0.4
1,781,055	-				+0.9
1,781,064	+				-0.5
1,781,064	+				-0.3
1,781,068	+				-0.2
1,781,068	+				-0.9
1,781,069	-				+1.1
1,781,069	-				-0.1
1,781,069	-				+0.0
1,781,096	+				-0.3
1,781,097	-				+0.6
1,781,110	+				-1.5
1,781,168	+				-0.3
1,781,186	+				-0.2
1,781,187	-				+0.5
1,781,191	+				-0.0
1,781,458	-		CA265_RS07135	0.66	-0.4
1,781,461	+		CA265_RS07135	0.66	+0.5
1,781,501	-		CA265_RS07135	0.75	-1.5
1,781,528	-		CA265_RS07135	0.81	-0.6
1,781,528	-		CA265_RS07135	0.81	+0.2
1,781,528	-		CA265_RS07135	0.81	-0.2
1,781,528	-		CA265_RS07135	0.81	-1.6
1,781,605	-				-1.8
1,781,699	-				-0.6
1,781,699	-				+0.1
1,781,801	-				+2.7
1,781,841	-				-0.7
1,781,856	-				+0.8
1,781,872	+				-0.1
1,781,880	-				-0.8
1,781,880	-				-0.3
1,781,880	-				-0.3
1,781,982	+		CA265_RS07140	0.16	+1.5
1,781,999	+		CA265_RS07140	0.18	+0.1
1,782,000	-		CA265_RS07140	0.18	+0.6
1,782,081	+		CA265_RS07140	0.24	-0.4
1,782,082	-		CA265_RS07140	0.24	-0.5
1,782,087	-		CA265_RS07140	0.25	+0.0
1,782,087	-		CA265_RS07140	0.25	-0.1
1,782,127	+		CA265_RS07140	0.28	-0.0
1,782,128	-		CA265_RS07140	0.28	+0.1
1,782,173	-		CA265_RS07140	0.32	-0.6
1,782,276	-		CA265_RS07140	0.40	+0.1
1,782,290	+		CA265_RS07140	0.41	-0.5
1,782,291	-		CA265_RS07140	0.41	+0.3
1,782,291	-		CA265_RS07140	0.41	-0.8
1,782,457	+		CA265_RS07140	0.55	+0.1
1,782,458	-		CA265_RS07140	0.55	+0.0
1,782,503	-		CA265_RS07140	0.59	-0.6
1,782,503	-		CA265_RS07140	0.59	-0.1
1,782,506	-		CA265_RS07140	0.59	+0.1
1,782,506	-		CA265_RS07140	0.59	-0.0
1,782,600	+		CA265_RS07140	0.66	+0.5
1,782,601	-		CA265_RS07140	0.67	-0.2
1,782,601	-		CA265_RS07140	0.67	-0.3